From 96ae9822c4c641587ea151e6a58eddbdb6e66590 Mon Sep 17 00:00:00 2001 From: zimoun Date: Fri, 21 May 2021 22:26:01 +0200 Subject: gnu: r-affyio: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-affyio): Move from here... * gnu/packages/bioconductor.scm (r-affyio): ...to here. --- gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 24 ------------------------ 2 files changed, 24 insertions(+), 24 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 659c8f5c82..9faf7021da 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1899,6 +1899,30 @@ problems in CEL-level data to help evaluate performance of quality metrics.") to streamline the more common analyses that a Biostatistician might see.") (license license:artistic2.0))) +(define-public r-affyio + (package + (name "r-affyio") + (version "1.60.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyio" version)) + (sha256 + (base32 + "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h")))) + (build-system r-build-system) + (propagated-inputs + `(("r-zlibbioc" ,r-zlibbioc))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/bmbolstad/affyio") + (synopsis "Tools for parsing Affymetrix data files") + (description + "This package provides routines for parsing Affymetrix data files based +upon file format information. The primary focus is on accessing the CEL and +CDF file formats.") + (license license:lgpl2.0+))) + (define-public r-affxparser (package (name "r-affxparser") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9e7bae2525..0dd362c8ee 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9108,30 +9108,6 @@ proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.") (license license:artistic2.0))) -(define-public r-affyio - (package - (name "r-affyio") - (version "1.60.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "affyio" version)) - (sha256 - (base32 - "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h")))) - (build-system r-build-system) - (propagated-inputs - `(("r-zlibbioc" ,r-zlibbioc))) - (inputs - `(("zlib" ,zlib))) - (home-page "https://github.com/bmbolstad/affyio") - (synopsis "Tools for parsing Affymetrix data files") - (description - "This package provides routines for parsing Affymetrix data files based -upon file format information. The primary focus is on accessing the CEL and -CDF file formats.") - (license license:lgpl2.0+))) - (define-public r-vsn (package (name "r-vsn") -- cgit 1.4.1