From a9d140996cdd7282cf98343ab5bd5d06ed440280 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 11 Jul 2023 20:16:53 +0200
Subject: gnu: r-isoformswitchanalyzer: Update to 2.0.1.

* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
---
 gnu/packages/bioconductor.scm | 12 +++++++++---
 1 file changed, 9 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b1c609f746..6655be8c17 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5153,24 +5153,24 @@ possible.")
 (define-public r-isoformswitchanalyzer
   (package
     (name "r-isoformswitchanalyzer")
-    (version "1.21.0")
+    (version "2.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "IsoformSwitchAnalyzeR" version))
        (sha256
-        (base32 "1vzzsqjnkaffyxgvw6bsbxhgg1102cap2hsmzkhwzh6bvh02bwkx"))))
+        (base32 "1zjwhxlayz2sb77vspw280didhawj282i5gvxnydcdparg165zwf"))))
     (properties `((upstream-name . "IsoformSwitchAnalyzeR")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-biobase
            r-biocgenerics
+           r-biocparallel
            r-biostrings
            r-bsgenome
            r-dbi
            r-dexseq
            r-dplyr
-           r-drimseq
            r-edger
            r-futile-logger
            r-genomeinfodb
@@ -5180,14 +5180,20 @@ possible.")
            r-iranges
            r-limma
            r-magrittr
+           r-pfamanalyzer
            r-plyr
            r-rcolorbrewer
            r-rcurl
            r-readr
            r-reshape2
            r-rtracklayer
+           r-s4vectors
+           r-saturn
            r-stringr
+           r-summarizedexperiment
+           r-sva
            r-tibble
+           r-tidyr
            r-tximeta
            r-tximport
            r-venndiagram
-- 
cgit 1.4.1