From b4cfd40aaee4477382f6a28aa939a304bf92f894 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 19 Jul 2023 14:37:54 +0200 Subject: gnu: Add r-enhancedvolcano. * gnu/packages/bioconductor.scm (r-enhancedvolcano): New variable. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4f1a4d61b1..9d924c5429 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6677,6 +6677,34 @@ other types of genomic data that produce counts, including ChIP-seq, SAGE and CAGE.") (license license:gpl2+))) +(define-public r-enhancedvolcano + (package + (name "r-enhancedvolcano") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "EnhancedVolcano" version)) + (sha256 + (base32 + "1mcyhgdvfmkkh0rlhf51an7j1zi96lqdhifki2aqmlx0lqvg4qxq")))) + (properties `((upstream-name . "EnhancedVolcano"))) + (build-system r-build-system) + (propagated-inputs (list r-ggplot2 r-ggrepel)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/kevinblighe/EnhancedVolcano") + (synopsis + "Publication-ready volcano plots with enhanced coloring and labeling") + (description + "Volcano plots represent a useful way to visualise the results of +differential expression analyses. This package provides a highly-configurable +function that produces publication-ready volcano plots. EnhancedVolcano will +attempt to fit as many point labels in the plot window as possible, thus +avoiding clogging up the plot with labels that could not otherwise have been +read. Other functionality allows the user to identify up to 4 different types +of attributes in the same plot space via color, shape, size, and shade +parameter configurations.") + (license license:gpl3))) + (define-public r-enmix (package (name "r-enmix") -- cgit 1.4.1