From d0983f294b808d81f34d2a37f450bee389527c08 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 28 Sep 2019 12:23:22 +0200 Subject: gnu: r-iranges: Update to 2.18.3. * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.3. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3fffb9f2ed..ce94aa1851 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7378,13 +7378,13 @@ S4Vectors package itself.") (define-public r-iranges (package (name "r-iranges") - (version "2.18.2") + (version "2.18.3") (source (origin (method url-fetch) (uri (bioconductor-uri "IRanges" version)) (sha256 (base32 - "0dc35844c1mfj07hvy6yn4wag6qdggbgl9gjcg3wpkh9hkm60a5n")))) + "05rw2b2bwns443n7d6lf97zdv1jbqdii2nprhs6x852w73m2a2g3")))) (properties `((upstream-name . "IRanges"))) (build-system r-build-system) -- cgit 1.4.1 From 272cb5a23ff8cfd359206a3a54419fff228ae361 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 28 Sep 2019 12:23:26 +0200 Subject: gnu: r-rsamtools: Update to 2.0.1. * gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ce94aa1851..935d080c0f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7742,13 +7742,13 @@ biological sequences or sets of sequences.") (define-public r-rsamtools (package (name "r-rsamtools") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Rsamtools" version)) (sha256 (base32 - "1nv5idyjk75mvl4np5sig0xa6qygm1ivj33k041ffyj19q8jf7ij")))) + "0wzp5vsmqs7h44r7lcw8fnz5x9bcdcfiqq8d3h62wwibyk2lg0w1")))) (properties `((upstream-name . "Rsamtools"))) (build-system r-build-system) -- cgit 1.4.1 From 80004ec01304b20750d9cd1bc57880ed304e1351 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 28 Sep 2019 12:23:29 +0200 Subject: gnu: r-rhtslib: Update to 1.16.2. * gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.2. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 935d080c0f..ea73186c20 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8294,14 +8294,14 @@ secondary structure and comparative analysis in R.") (define-public r-rhtslib (package (name "r-rhtslib") - (version "1.16.1") + (version "1.16.2") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhtslib" version)) (sha256 (base32 - "178zbrm221rwhbjk7j2v9g5ra44k0xg7c5abhd810m3g7snma8k8")))) + "07qaqj2hypmrg40m3pci082bzar6wi10dh77r4a8x74dfppcwdzf")))) (properties `((upstream-name . "Rhtslib"))) (build-system r-build-system) ;; Without this a temporary directory ends up in the Rhtslib.so binary, -- cgit 1.4.1 From b0a5be065e022e5f8a8937ffb780d8c4572fd249 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 28 Sep 2019 12:23:39 +0200 Subject: gnu: r-mzr: Update to 2.18.1. * gnu/packages/bioinformatics.scm (r-mzr): Update to 2.18.1. --- gnu/packages/bioinformatics.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ea73186c20..a411650828 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9176,14 +9176,14 @@ proteomics packages.") (define-public r-mzr (package (name "r-mzr") - (version "2.18.0") + (version "2.18.1") (source (origin (method url-fetch) (uri (bioconductor-uri "mzR" version)) (sha256 (base32 - "0g5r6yk4gyz0xdwlmrcij4zv7apdgsgygr043095l33hard6nsl5")) + "1pr1pcrg3r3pccm5ag6l8ic6rpqbk9jnlb9mm7g4ak5jwrajbzjq")) (modules '((guix build utils))) (snippet '(begin @@ -9204,7 +9204,8 @@ proteomics packages.") -lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))) #t))))) (inputs - `(;; XXX Boost 1.69 will not work here. + `(;; Our default boost package won't work here, unfortunately, even with + ;; mzR version 2.18.1. ("boost" ,boost-for-mysql) ; use this instead of the bundled boost sources ("zlib" ,zlib))) (propagated-inputs -- cgit 1.4.1 From e0c6c18371e4b7029724471cf43d1c95b69d1b81 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 28 Sep 2019 12:23:44 +0200 Subject: gnu: r-gviz: Update to 1.28.3. * gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.3. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a411650828..6d36bb73ba 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10279,14 +10279,14 @@ family of feature/genome hypotheses.") (define-public r-gviz (package (name "r-gviz") - (version "1.28.1") + (version "1.28.3") (source (origin (method url-fetch) (uri (bioconductor-uri "Gviz" version)) (sha256 (base32 - "0chsb3ijwd8zh588s1vqgfassn2rzax5rhqrhl0ini6pi4ilchp2")))) + "0347r1ly0vzpilflzbyzsjdf4cday294lw3fxzx61clblrmws1ki")))) (properties `((upstream-name . "Gviz"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1