From e761beb9a9197c6559c8acb48d2f123207388903 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 16 Feb 2016 17:20:32 +0100 Subject: gnu: Add r-org-mm-eg-db. * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/bioinformatics.scm') diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4f097f6d90..64a398f52b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4335,6 +4335,32 @@ annotations for the genome of the model worm Caenorhabditis elegans.") annotations for the genome of the model fruit fly Drosophila melanogaster.") (license license:artistic2.0))) +(define-public r-org-mm-eg-db + (package + (name "r-org-mm-eg-db") + (version "3.2.3") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "http://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Mm.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "0wh1pm3npdg7070875kfgiid3bqkz3q7rq6snhk6bxfvph00298y")))) + (properties + `((upstream-name . "org.Mm.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "http://www.bioconductor.org/packages/org.Mm.eg.db/") + (synopsis "Genome wide annotation for Mouse") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the model mouse Mus musculus.") + (license license:artistic2.0))) + (define-public r-qtl (package (name "r-qtl") -- cgit 1.4.1