From ea4d4f761635017a8cd87dac84685b526ba7e36b Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:34:44 +0200
Subject: gnu: r-shape: Update to 1.4.3.

* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bb7576352f..ff1ad8dc3e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -202,14 +202,14 @@ on (non-orthogonal) variable vectors in scatterplots and biplots.")
 (define-public r-shape
   (package
     (name "r-shape")
-    (version "1.4.2")
+    (version "1.4.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "shape" version))
        (sha256
         (base32
-         "0yk3cmsa57svcvbnm21pyr0s0qbhnllka8nmsg4yb41frjlqph66"))))
+         "1v9xp60p813rnx41vchkh32qmcb4z2zp9l7r1a8a6f8aqylnq3vj"))))
     (build-system r-build-system)
     (home-page "http://cran.r-project.org/web/packages/shape")
     (synopsis "Functions for plotting graphical shapes")
-- 
cgit 1.4.1


From a5c2980486eb755aee99948b756b1131e41c5c3f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:35:01 +0200
Subject: gnu: r-circlize: Update to 0.4.1.

* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ff1ad8dc3e..2843de49bb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -241,14 +241,14 @@ validation and filtering on the values, making options invisible or private.")
 (define-public r-circlize
   (package
     (name "r-circlize")
-    (version "0.4.0")
+    (version "0.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "circlize" version))
        (sha256
         (base32
-         "0p1zx1aawkblz48kzzfn5w1k3lbwv9wrk1k5gcfjrr2b4sz1pp5b"))))
+         "1w7i3jgxgq510axglzmw54ma9kq7k4c86i9ccndz10mrwc51fji0"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-colorspace" ,r-colorspace)
-- 
cgit 1.4.1


From eeb54328029463f930da07244b494f47bcc01151 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:35:25 +0200
Subject: gnu: r-powerlaw: Update to 0.70.1.

* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2843de49bb..196b7e29c3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -271,14 +271,14 @@ patterns behind multiple dimensional data.")
 (define-public r-powerlaw
   (package
     (name "r-powerlaw")
-    (version "0.70.0")
+    (version "0.70.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "poweRlaw" version))
        (sha256
         (base32
-         "1p2la3hslxq2xa8jkwvci6zcpn47cvyr9xqd5agp1riwwp2xw5gh"))))
+         "04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"))))
     (properties `((upstream-name . "poweRlaw")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit 1.4.1


From 38ea6cfab4067807769f40a74901f2a90134aee8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:35:43 +0200
Subject: gnu: r-reshape: Update to 0.8.7.

* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 196b7e29c3..2243a44e3a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -459,14 +459,14 @@ quantities.")
 (define-public r-reshape
   (package
     (name "r-reshape")
-    (version "0.8.6")
+    (version "0.8.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "reshape" version))
        (sha256
         (base32
-         "1f1ngalc22knhdm9djv1m6abnjqpv1frdzxfkpakhph2l67bk7fq"))))
+         "14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-plyr" ,r-plyr)
-- 
cgit 1.4.1


From bf958fcd63e820c19b1e0083b03baab764f1408a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:36:04 +0200
Subject: gnu: r-ggally: Update to 1.3.2.

* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2243a44e3a..ce46dcc2c2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -505,14 +505,14 @@ package also provides a C++ API, that works with or without Rcpp.")
 (define-public r-ggally
   (package
     (name "r-ggally")
-    (version "1.3.0")
+    (version "1.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "GGally" version))
        (sha256
         (base32
-         "12ddab0nd0f9c7bb6cx3c22mliyvc8xsxv26aqz3cvfbla8crp3b"))))
+         "02px7j28wzbhcgcwm2m0pxb6g7s5zvphl64ix55pkvag4m2ky57l"))))
     (properties `((upstream-name . "GGally")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit 1.4.1


From f7b172187a06934b218367bcebc4026a8bc98cd6 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:36:22 +0200
Subject: gnu: r-sp: Update to 1.2-5.

* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ce46dcc2c2..1d30ebdae6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -556,14 +556,14 @@ most popular ones.")
 (define-public r-sp
   (package
     (name "r-sp")
-    (version "1.2-4")
+    (version "1.2-5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sp" version))
        (sha256
         (base32
-         "0crba3j00mb2xv2yk60rpa57gn97xq4ql3a6p9cjzqjxzv2cknk2"))))
+         "09yydnacp33yx0kn537k96fjlbf75fjafqfknpa5gvci4l888bqd"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-lattice" ,r-lattice)))
-- 
cgit 1.4.1


From 28f2f8939158a3a2d3203c08c106fe7349af026a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:36:43 +0200
Subject: gnu: r-distillery: Update to 1.0-4.

* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1d30ebdae6..d07d6b680b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -623,14 +623,14 @@ quantile mixture from L-moments and trimmed L-moments.")
 (define-public r-distillery
   (package
     (name "r-distillery")
-    (version "1.0-2")
+    (version "1.0-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "distillery" version))
        (sha256
         (base32
-         "12m4cacvc18fd3aayc8iih5q6bwsmvf29b55fwp7vs8wp1h8nd8c"))))
+         "1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"))))
     (build-system r-build-system)
     (home-page "http://www.ral.ucar.edu/staff/ericg")
     (synopsis "Functions for confidence intervals and object information")
-- 
cgit 1.4.1


From c62276b2faa4d74df30428f48fe942d8797f7f53 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 1 Sep 2017 14:37:03 +0200
Subject: gnu: r-ksamples: Update to 1.2-7.

* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d07d6b680b..80335c4686 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -904,14 +904,14 @@ George Marsaglia are included.")
 (define-public r-ksamples
   (package
     (name "r-ksamples")
-    (version "1.2-6")
+    (version "1.2-7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "kSamples" version))
        (sha256
         (base32
-         "1pbam0zqq44slpxdgl2s2fsfdgl7i0pgm8bzlvnm0fy0na24bgdj"))))
+         "0f19rjngk0lg6s8c6h5l55qpxp8sl4vxj3kpi05cizzncny9b9bj"))))
     (properties `((upstream-name . "kSamples")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit 1.4.1


From f97ce81575208eb673cb245d716b67bc61ec1a31 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 10 Sep 2017 00:35:09 +0200
Subject: gnu: Add r-cvst.

* gnu/packages/cran.scm (r-cvst): New variable.
---
 gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 80335c4686..05fdde929d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -23,6 +23,7 @@
   #:use-module (guix utils)
   #:use-module (guix build-system r)
   #:use-module (gnu packages gcc)
+  #:use-module (gnu packages machine-learning)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages statistics)
@@ -928,3 +929,34 @@ sampling from populations, given the observed tie pattern.  Except for Steel's
 test and the JT test it also combines these tests across several blocks of
 samples.")
     (license license:gpl2+)))
+
+(define-public r-cvst
+  (package
+    (name "r-cvst")
+    (version "0.2-1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "CVST" version))
+       (sha256
+        (base32
+         "17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"))))
+    (properties `((upstream-name . "CVST")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-kernlab" ,r-kernlab)
+       ("r-matrix" ,r-matrix)))
+    (home-page "http://cran.r-project.org/web/packages/CVST")
+    (synopsis "Fast cross-validation via sequential testing")
+    (description
+     "This package implements the fast cross-validation via sequential
+testing (CVST) procedure.  CVST is an improved cross-validation procedure
+which uses non-parametric testing coupled with sequential analysis to
+determine the best parameter set on linearly increasing subsets of the data.
+Additionally to the CVST the package contains an implementation of the
+ordinary k-fold cross-validation with a flexible and powerful set of helper
+objects and methods to handle the overall model selection process.  The
+implementations of the Cochran's Q test with permutations and the sequential
+testing framework of Wald are generic and can therefore also be used in other
+contexts.")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From 797e1dfbf209e7b4cb23fcce6074933ba2e98058 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 10 Sep 2017 00:35:30 +0200
Subject: gnu: Add r-lava.

* gnu/packages/cran.scm (r-lava): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 05fdde929d..f424b6d86e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -960,3 +960,25 @@ implementations of the Cochran's Q test with permutations and the sequential
 testing framework of Wald are generic and can therefore also be used in other
 contexts.")
     (license license:gpl2+)))
+
+(define-public r-lava
+  (package
+    (name "r-lava")
+    (version "1.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "lava" version))
+       (sha256
+        (base32
+         "0x6s7x111x87a4rh5nbk7vw6j4iq40i1c21w0j795h28rgyc7zc2"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-numderiv" ,r-numderiv)
+       ("r-survival" ,r-survival)))
+    (home-page "https://github.com/kkholst/lava")
+    (synopsis "Latent variable models")
+    (description
+     "This package provides tools for the estimation and simulation of latent
+variable models.")
+    (license license:gpl3)))
-- 
cgit 1.4.1


From d26b7c1bfc4da0696e05462cd352b6f09bb03a7f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 10 Sep 2017 00:35:45 +0200
Subject: gnu: Add r-drr.

* gnu/packages/cran.scm (r-drr): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f424b6d86e..6d4d694b6e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -982,3 +982,27 @@ contexts.")
      "This package provides tools for the estimation and simulation of latent
 variable models.")
     (license license:gpl3)))
+
+(define-public r-drr
+  (package
+    (name "r-drr")
+    (version "0.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "DRR" version))
+       (sha256
+        (base32
+         "1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"))))
+    (properties `((upstream-name . "DRR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-cvst" ,r-cvst)
+       ("r-kernlab" ,r-kernlab)
+       ("r-matrix" ,r-matrix)))
+    (home-page "http://cran.r-project.org/web/packages/DRR")
+    (synopsis "Dimensionality reduction via regression")
+    (description
+     "This package provides an implementation of dimensionality reduction via
+regression using Kernel Ridge Regression.")
+    (license license:gpl3)))
-- 
cgit 1.4.1


From 9dd707f03b6cb8772d5211ff627195d9ec4d535c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:53:39 +0200
Subject: gnu: Add r-prodlim.

* gnu/packages/cran.scm (r-prodlim): New variable.
---
 gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6d4d694b6e..6f35d35d67 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1006,3 +1006,28 @@ variable models.")
      "This package provides an implementation of dimensionality reduction via
 regression using Kernel Ridge Regression.")
     (license license:gpl3)))
+
+(define-public r-prodlim
+  (package
+    (name "r-prodlim")
+    (version "1.6.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "prodlim" version))
+       (sha256
+        (base32
+         "0m51rkivx1zr6whdqwj66jpnkmp4385m06kkha3dp8qqf4jna9iz"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-kernsmooth" ,r-kernsmooth)
+       ("r-lava" ,r-lava)
+       ("r-rcpp" ,r-rcpp)
+       ("r-survival" ,r-survival)))
+    (home-page "http://cran.r-project.org/web/packages/prodlim")
+    (synopsis "Product-limit estimation for censored event history analysis")
+    (description
+     "This package provides a fast and user-friendly implementation of
+nonparametric estimators for censored event history (survival) analysis with
+the Kaplan-Meier and Aalen-Johansen methods.")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From b561f5636f23552f7881483494e8418a4e914a7a Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:54:14 +0200
Subject: gnu: Add r-dimred.

* gnu/packages/cran.scm (r-dimred): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6f35d35d67..19cc04c34b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1031,3 +1031,25 @@ regression using Kernel Ridge Regression.")
 nonparametric estimators for censored event history (survival) analysis with
 the Kaplan-Meier and Aalen-Johansen methods.")
     (license license:gpl2+)))
+
+(define-public r-dimred
+  (package
+    (name "r-dimred")
+    (version "0.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dimRed" version))
+       (sha256
+        (base32
+         "0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v"))))
+    (properties `((upstream-name . "dimRed")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-drr" ,r-drr)))
+    (home-page "https://github.com/gdkrmr/dimRed")
+    (synopsis "Framework for dimensionality reduction")
+    (description
+     "This package provides a collection of dimensionality reduction
+techniques from R packages and provides a common interface for calling the
+methods.")
+    (license license:gpl3)))
-- 
cgit 1.4.1


From 1b663184ebc385f826292bdf11559015a0d546f0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:54:33 +0200
Subject: gnu: Add r-timedate.

* gnu/packages/cran.scm (r-timedate): New variable.
---
 gnu/packages/cran.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 19cc04c34b..d94dd56916 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1053,3 +1053,24 @@ the Kaplan-Meier and Aalen-Johansen methods.")
 techniques from R packages and provides a common interface for calling the
 methods.")
     (license license:gpl3)))
+
+(define-public r-timedate
+  (package
+    (name "r-timedate")
+    (version "3012.100")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "timeDate" version))
+       (sha256
+        (base32
+         "0cn4h23y2y2bbg62qgm79xx4cvfla5xbpmi9hbdvkvpmm5yfyqk2"))))
+    (properties `((upstream-name . "timeDate")))
+    (build-system r-build-system)
+    (home-page "https://www.rmetrics.org")
+    (synopsis "Chronological and calendar objects")
+    (description
+     "This package provides an environment for teaching \"Financial
+Engineering and Computational Finance\" and for managing chronological and
+calendar objects.")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From f57b883ea3beed434244b401573452f8f3a63c1f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:54:49 +0200
Subject: gnu: Add r-ddalpha.

* gnu/packages/cran.scm (r-ddalpha): New variable.
---
 gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d94dd56916..5a81416767 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1074,3 +1074,33 @@ methods.")
 Engineering and Computational Finance\" and for managing chronological and
 calendar objects.")
     (license license:gpl2+)))
+
+(define-public r-ddalpha
+  (package
+    (name "r-ddalpha")
+    (version "1.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ddalpha" version))
+       (sha256
+        (base32
+         "0nsd515x6bap1qpfyx141hyldmpmyasnhv0f8s9dj6zcklp89af4"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bh" ,r-bh)
+       ("r-class" ,r-class)
+       ("r-mass" ,r-mass)
+       ("r-rcpp" ,r-rcpp)
+       ("r-robustbase" ,r-robustbase)))
+    (home-page "http://cran.r-project.org/web/packages/ddalpha")
+    (synopsis "Depth-Based classification and calculation of data depth")
+    (description
+     "This package contains procedures for depth-based supervised learning,
+which are entirely non-parametric, in particular the DDalpha-procedure (Lange,
+Mosler and Mozharovskyi, 2014).  The training data sample is transformed by a
+statistical depth function to a compact low-dimensional space, where the final
+classification is done.  It also offers an extension to functional data and
+routines for calculating certain notions of statistical depth functions.  50
+multivariate and 5 functional classification problems are included.")
+    (license license:gpl2)))
-- 
cgit 1.4.1


From 5a87093fd57f136cb9091d2d97d3674e8dac6e61 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:55:04 +0200
Subject: gnu: Add r-gower.

* gnu/packages/cran.scm (r-gower): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5a81416767..1256eb30bd 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1104,3 +1104,25 @@ classification is done.  It also offers an extension to functional data and
 routines for calculating certain notions of statistical depth functions.  50
 multivariate and 5 functional classification problems are included.")
     (license license:gpl2)))
+
+(define-public r-gower
+  (package
+    (name "r-gower")
+    (version "0.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "gower" version))
+       (sha256
+        (base32
+         "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"))))
+    (build-system r-build-system)
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/markvanderloo/gower")
+    (synopsis "Gower's distance")
+    (description
+     "This package provides tools to compute Gower's distance (or similarity)
+coefficient between records, and to compute the top-n matches between records.
+Core algorithms are executed in parallel on systems supporting OpenMP.")
+    (license license:gpl3)))
-- 
cgit 1.4.1


From 649cf27c01748cbbea4d5410f860c559d2d3e62c Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:55:19 +0200
Subject: gnu: Add r-rcpproll.

* gnu/packages/cran.scm (r-rcpproll): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 1256eb30bd..7d0e2b3276 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1126,3 +1126,27 @@ multivariate and 5 functional classification problems are included.")
 coefficient between records, and to compute the top-n matches between records.
 Core algorithms are executed in parallel on systems supporting OpenMP.")
     (license license:gpl3)))
+
+(define-public r-rcpproll
+  (package
+    (name "r-rcpproll")
+    (version "0.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "RcppRoll" version))
+       (sha256
+        (base32
+         "19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"))))
+    (properties `((upstream-name . "RcppRoll")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rcpp" ,r-rcpp)))
+    (home-page "http://cran.r-project.org/web/packages/RcppRoll")
+    (synopsis "Efficient rolling and windowed operations")
+    (description
+     "This package provides fast and efficient routines for common rolling /
+windowed operations.  Routines for the efficient computation of windowed mean,
+median, sum, product, minimum, maximum, standard deviation and variance are
+provided.")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From 6c3d42d61339f6728d7fec4e688caee24183ffc0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:55:34 +0200
Subject: gnu: Add r-ipred.

* gnu/packages/cran.scm (r-ipred): New variable.
---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7d0e2b3276..b42e791e95 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1150,3 +1150,30 @@ windowed operations.  Routines for the efficient computation of windowed mean,
 median, sum, product, minimum, maximum, standard deviation and variance are
 provided.")
     (license license:gpl2+)))
+
+(define-public r-ipred
+  (package
+    (name "r-ipred")
+    (version "0.9-6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ipred" version))
+       (sha256
+        (base32
+         "1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-class" ,r-class)
+       ("r-mass" ,r-mass)
+       ("r-nnet" ,r-nnet)
+       ("r-prodlim" ,r-prodlim)
+       ("r-rpart" ,r-rpart)
+       ("r-survival" ,r-survival)))
+    (home-page "http://cran.r-project.org/web/packages/ipred")
+    (synopsis "Improved predictors")
+    (description
+     "This package provides improved predictive models by indirect
+classification and bagging for classification, regression and survival
+problems as well as resampling based estimators of prediction error.")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From ba4527ab94484ab7c01139428cb713708c0148e0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 11 Sep 2017 02:55:53 +0200
Subject: gnu: Add r-recipes.

* gnu/packages/cran.scm (r-recipes): New variable.
---
 gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b42e791e95..691ed59aab 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1177,3 +1177,40 @@ provided.")
 classification and bagging for classification, regression and survival
 problems as well as resampling based estimators of prediction error.")
     (license license:gpl2+)))
+
+(define-public r-recipes
+  (package
+    (name "r-recipes")
+    (version "0.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "recipes" version))
+       (sha256
+        (base32
+         "0rydk403qihxmcv3zz323r3ywk4g1v7ibvj452rxhm0z22sqk9kb"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ddalpha" ,r-ddalpha)
+       ("r-dimred" ,r-dimred)
+       ("r-dplyr" ,r-dplyr)
+       ("r-gower" ,r-gower)
+       ("r-ipred" ,r-ipred)
+       ("r-lubridate" ,r-lubridate)
+       ("r-magrittr" ,r-magrittr)
+       ("r-purrr" ,r-purrr)
+       ("r-rcpproll" ,r-rcpproll)
+       ("r-rlang" ,r-rlang)
+       ("r-tibble" ,r-tibble)
+       ("r-tidyselect" ,r-tidyselect)
+       ("r-timedate" ,r-timedate)))
+    (home-page "https://github.com/topepo/recipes")
+    (synopsis "Preprocessing tools to create design matrices")
+    (description
+     "Recipes is an extensible framework to create and preprocess design
+matrices.  Recipes consist of one or more data manipulation and analysis
+\"steps\".  Statistical parameters for the steps can be estimated from an
+initial data set and then applied to other data sets.  The resulting design
+matrices can then be used as inputs into statistical or machine learning
+models.")
+    (license license:gpl2)))
-- 
cgit 1.4.1


From 65eb1c4a2852f37090a0d757e71a301ed2d55228 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 18 Sep 2017 14:21:56 +0200
Subject: gnu: r-energy: Update to 1.7-2.

* gnu/packages/cran.scm (r-energy): Update to 1.7-2.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 691ed59aab..409894e5d6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -852,14 +852,14 @@ data).  Weighted versions of MLE, MME and QME are available.")
 (define-public r-energy
   (package
     (name "r-energy")
-    (version "1.7-0")
+    (version "1.7-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "energy" version))
        (sha256
         (base32
-         "1g4hqi6mgsnd1w4q7dd2m40ljh2jdmvad91ksbq9fscnrqpvji1x"))))
+         "19c7bgjnm4ggf7w5mk64c5shkma3sa9wc8x117iqv7pk1bvvyy3p"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-boot" ,r-boot)
-- 
cgit 1.4.1


From d311292b2024e098f4fdc15d17a4990497a0cf01 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 28 Sep 2017 21:31:32 +0200
Subject: gnu: r-rcpp: Update to 0.12.13.

* gnu/packages/cran.scm (r-rcpp): Update to 0.12.13.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 409894e5d6..2e84085d76 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -92,13 +92,13 @@ error stream.")
 (define-public r-rcpp
   (package
     (name "r-rcpp")
-    (version "0.12.12")
+    (version "0.12.13")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rcpp" version))
        (sha256
-        (base32 "1byyqvlgb2p46p1gv243k73rk69fa8pa4l5m5asmckag2pkb2glz"))))
+        (base32 "1bm84yc48475plgsnnbvzi6nzkixpnfw8ry86ax63f9g524asw55"))))
     (build-system r-build-system)
     (home-page "http://www.rcpp.org")
     (synopsis "Seamless R and C++ integration")
-- 
cgit 1.4.1


From 7ef9e146e9bcfc2b9d0fea219047b46cf54d09a9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 28 Sep 2017 21:31:56 +0200
Subject: gnu: r-lava: Update to 1.5.1.

* gnu/packages/cran.scm (r-lava): Update to 1.5.1.
---
 gnu/packages/cran.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2e84085d76..761215ba0a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -964,14 +964,14 @@ contexts.")
 (define-public r-lava
   (package
     (name "r-lava")
-    (version "1.5")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lava" version))
        (sha256
         (base32
-         "0x6s7x111x87a4rh5nbk7vw6j4iq40i1c21w0j795h28rgyc7zc2"))))
+         "1vcm04h9i39gmf2prl5d4j4il4gs6skzr6y2fvl1vn4hklna87f4"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-numderiv" ,r-numderiv)
-- 
cgit 1.4.1


From e90456b94c96607fa4cb6304372dc7d9fba5513d Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 28 Sep 2017 21:52:39 +0200
Subject: gnu: r-ddalpha: Update to 1.3.1.

* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.1.
[propagated-inputs]: Add r-sfsmisc.
[native-inputs]: Add gfortran.
---
 gnu/packages/cran.scm | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

(limited to 'gnu/packages/cran.scm')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 761215ba0a..e00a8a4ba2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1078,21 +1078,24 @@ calendar objects.")
 (define-public r-ddalpha
   (package
     (name "r-ddalpha")
-    (version "1.2.1")
+    (version "1.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ddalpha" version))
        (sha256
         (base32
-         "0nsd515x6bap1qpfyx141hyldmpmyasnhv0f8s9dj6zcklp89af4"))))
+         "0pczw9543y7f92m7gyk7rxcjn8vsjaldc5vl0r56ywip9i374zbh"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-bh" ,r-bh)
        ("r-class" ,r-class)
        ("r-mass" ,r-mass)
        ("r-rcpp" ,r-rcpp)
-       ("r-robustbase" ,r-robustbase)))
+       ("r-robustbase" ,r-robustbase)
+       ("r-sfsmisc" ,r-sfsmisc)))
+    (native-inputs
+     `(("gfortran" ,gfortran)))
     (home-page "http://cran.r-project.org/web/packages/ddalpha")
     (synopsis "Depth-Based classification and calculation of data depth")
     (description
-- 
cgit 1.4.1