From 59b55def00361b1dbe2e979c2d0d4517d861c60c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 29 Aug 2018 13:10:58 +0200 Subject: gnu: Add r-infotheo. * gnu/packages/cran.scm (r-infotheo): New variable. --- gnu/packages/cran.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index eb6bf9c38b..76f0359312 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4944,3 +4944,22 @@ developers to generate user interfaces easy to maintain.") models. The methods employed are applicable to virtually any predictive model and make comparisons between different methodologies straightforward.") (license license:gpl2+))) + +(define-public r-infotheo + (package + (name "r-infotheo") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "infotheo" version)) + (sha256 + (base32 + "18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv")))) + (build-system r-build-system) + (home-page "http://homepage.meyerp.com/software") + (synopsis "Information-theoretic measures") + (description + "This package implements various measures of information theory based on +several entropy estimators.") + (license license:gpl3+))) -- cgit 1.4.1 From 9e21f2170ec36f04097cee6ee76ba14c888cc81c Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 28 Aug 2018 22:32:44 +0200 Subject: gnu: Add r-abcoptim. gnu/packages/cran.scm (r-abcoptim): New variable. Signed-off-by: Leo Famulari --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 76f0359312..016d1b1e41 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4963,3 +4963,28 @@ and make comparisons between different methodologies straightforward.") "This package implements various measures of information theory based on several entropy estimators.") (license license:gpl3+))) + +(define-public r-abcoptim + (package + (name "r-abcoptim") + (version "0.15.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ABCoptim" version)) + (sha256 + (base32 "1ih0xk88qhsmpvnxf56041wx5sk8as2f4f2gdnpnwdym9mbr9n4b")))) + (properties `((upstream-name . "ABCoptim"))) + (build-system r-build-system) + (propagated-inputs `(("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/gvegayon/ABCoptim/") + (synopsis "Optimization of Artificial Bee Colony algorithm") + (description + "Artificial Bee Colony (ABC) is one of the most recently defined algorithms by Dervis +Karaboga in 2005, motivated by the intelligent behavior of honey bees. It is as +simple as Particle Swarm Optimization (PSO) and Differential Evolution (DE) +algorithms, and uses only common control parameters such as colony size and +maximum cycle number. The @code{r-abcoptim} implements the Artificial bee +colony optimization algorithm @url{http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pdf}. + This version is a work-in-progress and is written in R code.") + (license license:expat))) -- cgit 1.4.1 From 356230da4a77eef1345e4b2079db7020df98cdc6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 12:26:56 +0200 Subject: gnu: Add r-fansi. * gnu/packages/cran.scm (r-fansi): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 016d1b1e41..be64aa3a98 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4424,6 +4424,27 @@ packages. It contains also functions for simplifying some clustering analysis steps and provides ggplot2-based elegant data visualization.") (license license:gpl2))) +(define-public r-fansi + (package + (name "r-fansi") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "fansi" version)) + (sha256 + (base32 + "135qj7bcc3mwn0vg55hiiadf66lx6zaxvkicfmfw9x0zr7ah2r6x")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes + (home-page "https://github.com/brodieG/fansi") + (synopsis "ANSI control sequence aware string functions") + (description + "This package provides counterparts to R string manipulation functions +that account for the effects of ANSI text formatting control sequences.") + (license license:gpl2+))) + (define-public r-nbclust (package (name "r-nbclust") -- cgit 1.4.1 From 53718658d20388f47fcf3747264f454c944c451e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 12:56:40 +0200 Subject: gnu: Add r-polynom. * gnu/packages/cran.scm (r-polynom): New variable. --- gnu/packages/cran.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index be64aa3a98..a142e9f1c7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4516,6 +4516,25 @@ patterned after functions in the Python @code{itertools} module, and others patterned after functions in the snow package.") (license license:gpl2))) +(define-public r-polynom + (package + (name "r-polynom") + (version "1.3-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "polynom" version)) + (sha256 + (base32 + "1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/polynom/") + (synopsis "Functions for univariate polynomial manipulations") + (description + "This package provides a collection of functions to implement a class for +univariate polynomial manipulations.") + (license license:gpl2))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From dd954dd7436b47494c8708cefd0856bf6719ac68 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 13:38:39 +0200 Subject: gnu: Add r-gbrd. * gnu/packages/cran.scm (r-gbrd): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a142e9f1c7..64dba2c9de 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4535,6 +4535,27 @@ patterned after functions in the snow package.") univariate polynomial manipulations.") (license license:gpl2))) +(define-public r-gbrd + (package + (name "r-gbrd") + (version "0.4-11") + (source + (origin + (method url-fetch) + (uri (cran-uri "gbRd" version)) + (sha256 + (base32 + "06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82")))) + (properties `((upstream-name . "gbRd"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/gbRd/") + (synopsis "Utilities for processing Rd objects and files") + (description + "This package provides utilities for processing Rd objects and files. +Extract argument descriptions and other parts of the help pages of +functions.") + (license license:gpl2+))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From 6a8469755cd63a2fd9deb617962bff22f8542485 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 13:38:51 +0200 Subject: gnu: Add r-rdpack. * gnu/packages/cran.scm (r-rdpack): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 64dba2c9de..f09bdbd06f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4556,6 +4556,33 @@ Extract argument descriptions and other parts of the help pages of functions.") (license license:gpl2+))) +(define-public r-rdpack + (package + (name "r-rdpack") + (version "0.9-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "Rdpack" version)) + (sha256 + (base32 + "067w0w6kza0hkzcnx58danl83yfvl9yjacr47mnid2bg856gdd1b")))) + (properties `((upstream-name . "Rdpack"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bibtex" ,r-bibtex) + ("r-gbrd" ,r-gbrd))) + (home-page "https://github.com/GeoBosh/Rdpack") + (synopsis "Update and manipulate Rd documentation objects") + (description + "This package provides functions for manipulation of R documentation +objects, including functions @code{reprompt()} and @code{ereprompt()} for +updating Rd documentation for functions, methods and classes; it also includes +Rd macros for citations and import of references from bibtex files for use in +Rd files and roxygen2 comments, as well as many functions for manipulation of +references and Rd files.") + (license license:gpl2+))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From 88e4ed55d68ffeaf67e5dad128f0e762e5814d26 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 13:41:11 +0200 Subject: gnu: Add r-clipr. * gnu/packages/cran.scm (r-clipr): New variable. --- gnu/packages/cran.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f09bdbd06f..2082378aae 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -43,6 +43,25 @@ #:use-module (gnu packages tls) #:use-module (gnu packages web)) +(define-public r-clipr + (package + (name "r-clipr") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "clipr" version)) + (sha256 + (base32 + "061x84ildc7g1p91yw5iyj8lpqdf4hqv36as85lw8c6qv9ywbsqv")))) + (build-system r-build-system) + (home-page "https://github.com/mdlincoln/clipr") + (synopsis "Read and write from the system clipboard") + (description + "This package provides simple utility functions to read from and write to +the system clipboards.") + (license license:gpl3))) + (define-public r-tidyverse (package (name "r-tidyverse") -- cgit 1.4.1 From 4f8247b54b4bb95fc58b3c4f0c30d635909496e2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 14:46:33 +0200 Subject: gnu: Add r-pkgbuild. * gnu/packages/cran.scm (r-pkgbuild): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2082378aae..ae51844dab 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -499,6 +499,33 @@ print, summary, plot, update, etc. processes. Most of its code is based on the @code{psutil} Python package.") (license license:bsd-3))) +(define-public r-pkgbuild + (package + (name "r-pkgbuild") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "pkgbuild" version)) + (sha256 + (base32 + "10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9")))) + (build-system r-build-system) + (propagated-inputs + `(("r-callr" ,r-callr) + ("r-crayon" ,r-crayon) + ("r-desc" ,r-desc) + ("r-r6" ,r-r6) + ("r-rprojroot" ,r-rprojroot) + ("r-withr" ,r-withr))) + (home-page "https://github.com/r-pkgs/pkgbuild") + (synopsis "Find tools needed to build R packages") + (description + "This package provides functions used to build R packages. It locates +compilers needed to build R packages on various platforms and ensures the PATH +is configured appropriately so R can use them.") + (license license:gpl3))) + (define-public r-rcpp (package (name "r-rcpp") -- cgit 1.4.1 From e362be8e899707fa85e7ae3102cbb5013d51bb69 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 14:46:49 +0200 Subject: gnu: Add r-pkgload. * gnu/packages/cran.scm (r-pkgload): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ae51844dab..9d736d4d6e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -526,6 +526,33 @@ compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.") (license license:gpl3))) +(define-public r-pkgload + (package + (name "r-pkgload") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "pkgload" version)) + (sha256 + (base32 + "1rjj229nq9fsl4ki4m75ybsavjgpqqhsr1zjzapwicsrxv6212px")))) + (build-system r-build-system) + (propagated-inputs + `(("r-desc" ,r-desc) + ("r-pkgbuild" ,r-pkgbuild) + ("r-rlang" ,r-rlang) + ("r-rprojroot" ,r-rprojroot) + ("r-rstudioapi" ,r-rstudioapi) + ("r-withr" ,r-withr))) + (home-page "https://github.com/r-lib/pkgload") + (synopsis "Simulate package installation and attach") + (description + "This package simulates the process of installing a package and then +attaching it. This is a key part of the @code{devtools} package as it allows +you to rapidly iterate while developing a package.") + (license license:gpl3))) + (define-public r-rcpp (package (name "r-rcpp") -- cgit 1.4.1 From c183fa26881d363c2c078dad534c9098e05456cd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:12:31 +0200 Subject: gnu: Add r-officer. * gnu/packages/cran.scm (r-officer): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9d736d4d6e..a7a42573ae 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4656,6 +4656,41 @@ Rd files and roxygen2 comments, as well as many functions for manipulation of references and Rd files.") (license license:gpl2+))) +(define-public r-officer + (package + (name "r-officer") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "officer" version)) + (sha256 + (base32 + "14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i")))) + (build-system r-build-system) + (propagated-inputs + `(("r-base64enc" ,r-base64enc) + ("r-digest" ,r-digest) + ("r-htmltools" ,r-htmltools) + ("r-magrittr" ,r-magrittr) + ("r-r6" ,r-r6) + ("r-rcpp" ,r-rcpp) + ("r-uuid" ,r-uuid) + ("r-xml2" ,r-xml2) + ("r-zip" ,r-zip))) + (home-page "https://davidgohel.github.io/officer") + (synopsis "Manipulation of Word and PowerPoint documents") + (description + "This package provides tools to access and manipulate Word and PowerPoint +documents from R. The package focuses on tabular and graphical reporting from +R; it also provides two functions that let users get document content into +data objects. A set of functions lets add and remove images, tables and +paragraphs of text in new or existing documents. When working with PowerPoint +presentations, slides can be added or removed; shapes inside slides can also +be added or removed. When working with Word documents, a cursor can be used +to help insert or delete content at a specific location in the document.") + (license license:gpl3))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From bfee9ce88f3c6bd49a1dfc003128d1cb3b7aa421 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:12:47 +0200 Subject: gnu: Add r-snakecase. * gnu/packages/cran.scm (r-snakecase): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a7a42573ae..e26deabd6e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4691,6 +4691,28 @@ be added or removed. When working with Word documents, a cursor can be used to help insert or delete content at a specific location in the document.") (license license:gpl3))) +(define-public r-snakecase + (package + (name "r-snakecase") + (version "0.9.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "snakecase" version)) + (sha256 + (base32 + "1g6xai53dl24ws0mwhqrkcv583ziaq505cv3z8v5dhjgy98kilyj")))) + (build-system r-build-system) + (propagated-inputs + `(("r-stringi" ,r-stringi) + ("r-stringr" ,r-stringr))) + (home-page "https://github.com/Tazinho/snakecase") + (synopsis "Convert strings into any case") + (description + "This package provides a consistent, flexible and easy to use tool to +parse and convert strings into cases like snake or camel among others.") + (license license:gpl3))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From de059e4bd3dce2937a4ac7853731f7f65e950475 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:12:57 +0200 Subject: gnu: Add r-prediction. * gnu/packages/cran.scm (r-prediction): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e26deabd6e..64156f5aa6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4713,6 +4713,30 @@ to help insert or delete content at a specific location in the document.") parse and convert strings into cases like snake or camel among others.") (license license:gpl3))) +(define-public r-prediction + (package + (name "r-prediction") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "prediction" version)) + (sha256 + (base32 + "19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table))) + (home-page "https://github.com/leeper/prediction") + (synopsis "Tidy, type-safe prediction methods") + (description + "This package provides the @code{prediction()} function, a type-safe +alternative to @code{predict()} that always returns a data frame. The package +currently supports common model types (e.g., @code{\"lm\"}, @code{\"glm\"}) +from the @code{stats} package, as well as numerous other model classes from +other add-on packages.") + (license license:expat))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From cfc06314334933f0045e1851449722a612e28f5b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:14:17 +0200 Subject: gnu: Add r-sjlabelled. * gnu/packages/cran.scm (r-sjlabelled): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 64156f5aa6..bf942f03f6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4737,6 +4737,39 @@ from the @code{stats} package, as well as numerous other model classes from other add-on packages.") (license license:expat))) +(define-public r-sjlabelled + (package + (name "r-sjlabelled") + (version "1.0.13") + (source + (origin + (method url-fetch) + (uri (cran-uri "sjlabelled" version)) + (sha256 + (base32 + "0xizj7mrhnbn8kwjgm076si9w68a7lgrx4vj1sbqmv9jx055h8wv")))) + (build-system r-build-system) + (propagated-inputs + `(("r-broom" ,r-broom) + ("r-dplyr" ,r-dplyr) + ("r-haven" ,r-haven) + ("r-magrittr" ,r-magrittr) + ("r-prediction" ,r-prediction) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-snakecase" ,r-snakecase) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) + (home-page "https://github.com/strengejacke/sjlabelled") + (synopsis "Labelled data utility functions") + (description + "This package provides a collection of functions dealing with labelled +data, like reading and writing data between R and other statistical software +packages. This includes easy ways to get, set or change value and variable +label attributes, to convert labelled vectors into factors or numeric (and +vice versa), or to deal with multiple declared missing values.") + (license license:gpl3))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From 1f560b9cdb820569e796caa9949557d9a18f8549 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:14:33 +0200 Subject: gnu: Add r-sjmisc. * gnu/packages/cran.scm (r-sjmisc): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bf942f03f6..65474d8f8b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4770,6 +4770,43 @@ label attributes, to convert labelled vectors into factors or numeric (and vice versa), or to deal with multiple declared missing values.") (license license:gpl3))) +(define-public r-sjmisc + (package + (name "r-sjmisc") + (version "2.7.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "sjmisc" version)) + (sha256 + (base32 + "11cy09k1d2y5wwqvafqxr01hzk4x68ji2pqlwj7fnpw27i3ap4q4")))) + (build-system r-build-system) + (propagated-inputs + `(("r-broom" ,r-broom) + ("r-crayon" ,r-crayon) + ("r-dplyr" ,r-dplyr) + ("r-haven" ,r-haven) + ("r-magrittr" ,r-magrittr) + ("r-pillar" ,r-pillar) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-sjlabelled" ,r-sjlabelled) + ("r-stringdist" ,r-stringdist) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) + ("r-tidyselect" ,r-tidyselect))) + (home-page "https://github.com/strengejacke/sjmisc") + (synopsis "Data and variable transformation functions") + (description + "This package is a collection of miscellaneous utility functions, +supporting data transformation tasks like recoding, dichotomizing or grouping +variables, setting and replacing missing values. The data transformation +functions also support labelled data, and all integrate seamlessly into a +tidyverse workflow.") + (license license:gpl3))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From aaed237d1bcae69bd3c65f06633a8a4c88f2e382 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:14:45 +0200 Subject: gnu: Add r-nortest. * gnu/packages/cran.scm (r-nortest): New variable. --- gnu/packages/cran.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 65474d8f8b..4d6bd269b1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4807,6 +4807,25 @@ functions also support labelled data, and all integrate seamlessly into a tidyverse workflow.") (license license:gpl3))) +(define-public r-nortest + (package + (name "r-nortest") + (version "1.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "nortest" version)) + (sha256 + (base32 + "17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/nortest/") + (synopsis "Tests for normality") + (description + "This package provides five omnibus tests for testing the composite +hypothesis of normality.") + (license license:gpl2+))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From 0fd7d59dc387eea437482f7584d03c5a20399faa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 15:14:56 +0200 Subject: gnu: Add r-moonbook. * gnu/packages/cran.scm (r-moonbook): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4d6bd269b1..1025ff093a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4826,6 +4826,35 @@ tidyverse workflow.") hypothesis of normality.") (license license:gpl2+))) +(define-public r-moonbook + (package + (name "r-moonbook") + (version "0.2.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "moonBook" version)) + (sha256 + (base32 + "0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6")))) + (properties `((upstream-name . "moonBook"))) + (build-system r-build-system) + (propagated-inputs + `(("r-magrittr" ,r-magrittr) + ("r-nortest" ,r-nortest) + ("r-purrr" ,r-purrr) + ("r-sjmisc" ,r-sjmisc) + ("r-stringr" ,r-stringr) + ("r-survival" ,r-survival))) + (home-page "https://github.com/cardiomoon/moonBook") + (synopsis "Functions and datasets for the book by Keon-Woong Moon") + (description + "This package provides several analysis-related functions for the book +entitled \"R statistics and graph for medical articles\" (written in Korean), +version 1, by Keon-Woong Moon with Korean demographic data with several plot +functions.") + (license license:gpl2))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From 589bd1c4260a429536d3a69a4b7c0a7bcd2e4357 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:23:51 +0200 Subject: gnu: Add r-flextable. * gnu/packages/cran.scm (r-flextable): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1025ff093a..ea3f1c4981 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4855,6 +4855,37 @@ version 1, by Keon-Woong Moon with Korean demographic data with several plot functions.") (license license:gpl2))) +(define-public r-flextable + (package + (name "r-flextable") + (version "0.4.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "flextable" version)) + (sha256 + (base32 + "09j2y0z7rkc0w1cl9pp1cpk6fnzzfr6245mxa3ca42z9k2cy2jfl")))) + (build-system r-build-system) + (propagated-inputs + `(("r-gdtools" ,r-gdtools) + ("r-htmltools" ,r-htmltools) + ("r-knitr" ,r-knitr) + ("r-officer" ,r-officer) + ("r-r6" ,r-r6) + ("r-rmarkdown" ,r-rmarkdown) + ("r-stringr" ,r-stringr) + ("r-xml2" ,r-xml2))) + (home-page "https://davidgohel.github.io/flextable") + (synopsis "Functions for tabular reporting") + (description + "This package provides tools to create pretty tables for HTML documents +and other formats. Functions are provided to let users create tables, modify +and format their content. It extends the @code{officer} package and can be +used within R markdown documents when rendering to HTML and to Word +documents.") + (license license:gpl3))) + (define-public r-writexl (package (name "r-writexl") -- cgit 1.4.1 From cb96d81be47ac5e553dc7b14ce64823a9b6f99a5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:24:12 +0200 Subject: gnu: r-doby: Update to 4.6-2. * gnu/packages/cran.scm (r-doby): Update to 4.6-2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ea3f1c4981..56b6462fae 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5079,14 +5079,14 @@ Group (Non-)Overlap considerations.") (define-public r-doby (package (name "r-doby") - (version "4.6-1") + (version "4.6-2") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "1y02awzid23bxz8hx6j8pxd6i7jaq8pdw3k60rag8y6m69incrw5")))) + "02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From 2cdd9d4f832bf11d9b419e15fdfcdcf49ec99520 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:24:41 +0200 Subject: gnu: r-reticulate: Update to 1.10. * gnu/packages/cran.scm (r-reticulate): Update to 1.10. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 56b6462fae..9033fac0a6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4236,14 +4236,14 @@ obtain a better initial configuration in non-metric MDS.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.8") + (version "1.10") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr")))) + "0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs -- cgit 1.4.1 From e3c1e93e35f25fc746476226e3c7b8c633eb2b8e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:25:04 +0200 Subject: gnu: r-reprex: Update to 0.2.0. * gnu/packages/cran.scm (r-reprex): Update to 0.2.0. [propagated-inputs]: Add r-clipr, r-rlang, and r-withr. --- gnu/packages/cran.scm | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9033fac0a6..2c6de3ddd2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -162,20 +162,23 @@ package is a port of the Python package @code{cssselect}.") (define-public r-reprex (package (name "r-reprex") - (version "0.1.2") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "reprex" version)) (sha256 (base32 - "105d9vsmqfilgpw8psfb2wyiz1hvcycvh4cqhb3ab37lm3rcavvs")))) + "1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) + ("r-clipr" ,r-clipr) ("r-knitr" ,r-knitr) + ("r-rlang" ,r-rlang) ("r-rmarkdown" ,r-rmarkdown) - ("r-whisker" ,r-whisker))) + ("r-whisker" ,r-whisker) + ("r-withr" ,r-withr))) (home-page "https://github.com/tidyverse/reprex") (synopsis "Prepare reproducible R code examples for sharing") (description -- cgit 1.4.1 From b72de5b3f674e3b360f1d7c5032d9fb47e0992d7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:25:42 +0200 Subject: gnu: r-callr: Update to 3.0.0. * gnu/packages/cran.scm (r-callr): Update to 3.0.0. [propagated-inputs]: Add r-base64enc. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2c6de3ddd2..5c3c7ed821 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -193,17 +193,18 @@ such as copy/paste from an R session.") (define-public r-callr (package (name "r-callr") - (version "2.0.4") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf")))) + "1rxbxy6kn7dj90z9hpppr9cnpvnxzknba2dwrdp0lrk5dh462qz3")))) (build-system r-build-system) (propagated-inputs - `(("r-r6" ,r-r6) + `(("r-base64enc" ,r-base64enc) + ("r-r6" ,r-r6) ("r-processx" ,r-processx))) (home-page "https://github.com/r-lib/callr#readme") (synopsis "Call R from R") -- cgit 1.4.1 From b00e8ae77105d8fe398f5b9d47812844aa21b5dd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:26:04 +0200 Subject: gnu: r-glue: Update to 1.3.0. * gnu/packages/cran.scm (r-glue): Update to 1.3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5c3c7ed821..6ef31e09dd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -392,14 +392,14 @@ colors are provided.") (define-public r-glue (package (name "r-glue") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "glue" version)) (sha256 (base32 - "0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr")))) + "1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq")))) (build-system r-build-system) (home-page "https://github.com/tidyverse/glue") (synopsis "Interpreted string literals") -- cgit 1.4.1 From c73752cac5e74691d9f28c3c8c29a2fbb8291f4c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:26:18 +0200 Subject: gnu: r-pls: Update to 2.7-0. * gnu/packages/cran.scm (r-pls): Update to 2.7-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6ef31e09dd..c6f4f73f53 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -453,14 +453,14 @@ error stream.") (define-public r-pls (package (name "r-pls") - (version "2.6-0") + (version "2.7-0") (source (origin (method url-fetch) (uri (cran-uri "pls" version)) (sha256 (base32 - "15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx")))) + "0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x")))) (build-system r-build-system) (home-page "http://mevik.net/work/software/pls.html") (synopsis "Partial Least Squares and Principal Component Regression") -- cgit 1.4.1 From 2d2b95d15141f55f747b785ca0094aeaf3001268 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:26:33 +0200 Subject: gnu: r-ipred: Update to 0.9-7. * gnu/packages/cran.scm (r-ipred): Update to 0.9-7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c6f4f73f53..b2768cc403 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1755,14 +1755,14 @@ provided.") (define-public r-ipred (package (name "r-ipred") - (version "0.9-6") + (version "0.9-7") (source (origin (method url-fetch) (uri (cran-uri "ipred" version)) (sha256 (base32 - "1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq")))) + "0q53cqs46501wsd4cmfsmr78l8nv1hkbamk9m0ns5qy02df5r254")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) -- cgit 1.4.1 From 45c156bf812e227b07e94b0420d41ed57ae10220 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:26:58 +0200 Subject: gnu: r-broom: Update to 0.5.0. * gnu/packages/cran.scm (r-broom): Update to 0.5.0. [propagated-inputs]: Add r-backports, r-dplyr, r-purrr, and r-tibble; remove r-plyr and r-psych. --- gnu/packages/cran.scm | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b2768cc403..4cf7d6295e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1816,22 +1816,23 @@ created using basic graphics.") (define-public r-broom (package (name "r-broom") - (version "0.4.5") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "1mrrqqw1bmjf2v88ziqwb5y86g29h0a3rsx2jpw0hrzrzb8i5kcb")))) + "1r3831vq0fd5sh5841xr844sghg88z7ws91hg4jgnzbbkxfjp4ag")))) (build-system r-build-system) (propagated-inputs - `(("r-dplyr" ,r-dplyr) + `(("r-backports" ,r-backports) + ("r-dplyr" ,r-dplyr) ("r-nlme" ,r-nlme) - ("r-plyr" ,r-plyr) - ("r-psych" ,r-psych) + ("r-purrr" ,r-purrr) ("r-reshape2" ,r-reshape2) ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/tidyverse/broom") (synopsis "Convert statistical analysis objects into tidy data frames") -- cgit 1.4.1 From dc66835226858236c12c498cc9de0e98c8c86e18 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:32:40 +0200 Subject: gnu: Add r-ucminf. * gnu/packages/cran.scm (r-ucminf): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4cf7d6295e..f64b48da5f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1981,6 +1981,30 @@ can be computed between character vectors while taking proper care of encoding or between integer vectors representing generic sequences.") (license license:gpl3+))) +(define-public r-ucminf + (package + (name "r-ucminf") + (version "1.1-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "ucminf" version)) + (sha256 + (base32 + "01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2")))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/ucminf/") + (synopsis "General-purpose unconstrained non-linear optimization") + (description + "This package provides an implementation of an algorithm for +general-purpose unconstrained non-linear optimization. The algorithm is of +quasi-Newton type with BFGS updating of the inverse Hessian and soft line +search with a trust region type monitoring of the input to the line search +algorithm. The interface of @code{ucminf} is designed for easy interchange +with the package @code{optim}.") + (license license:gpl2+))) + (define-public r-jomo (package (name "r-jomo") -- cgit 1.4.1 From b8f6e2f82a733759017269170e7b8813f04a9425 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:32:50 +0200 Subject: gnu: Add r-ordinal. * gnu/packages/cran.scm (r-ordinal): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f64b48da5f..590d2c90d3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2005,6 +2005,33 @@ algorithm. The interface of @code{ucminf} is designed for easy interchange with the package @code{optim}.") (license license:gpl2+))) +(define-public r-ordinal + (package + (name "r-ordinal") + (version "2018.8-25") + (source + (origin + (method url-fetch) + (uri (cran-uri "ordinal" version)) + (sha256 + (base32 + "03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-numderiv" ,r-numderiv) + ("r-ucminf" ,r-ucminf))) + (home-page "https://github.com/runehaubo/ordinal") + (synopsis "Regression models for ordinal data") + (description + "This package provides an implementation of cumulative link (mixed) +models also known as ordered regression models, proportional odds models, +proportional hazards models for grouped survival times and ordered models. +Estimation is via maximum likelihood and mixed models are fitted with the +Laplace approximation and adaptive Gauss-Hermite quadrature.") + (license license:gpl2+))) + (define-public r-jomo (package (name "r-jomo") -- cgit 1.4.1 From e7630cc93182f38b486c1c6825bf7a9ca5c3a6b0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:27:42 +0200 Subject: gnu: r-jomo: Update to 2.6-4. * gnu/packages/cran.scm (r-jomo): Update to 2.6-4. [propagated-inputs]: Add r-ordinal. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 590d2c90d3..8f9a463a0f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2035,17 +2035,18 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-3") + (version "2.6-4") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "14s8q0j5zgl1g1pfxg3a4y1jzvs0wl61ir4992wsj7safskj7zvi")))) + "05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) + ("r-ordinal" ,r-ordinal) ("r-survival" ,r-survival))) (home-page "https://cran.r-project.org/web/packages/jomo/") (synopsis "Multilevel Joint Modelling Multiple Imputation") -- cgit 1.4.1 From a7265593d3385423adc2dbeaeb4827db586b2e34 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:33:37 +0200 Subject: gnu: r-pan: Update to 1.6. * gnu/packages/cran.scm (r-pan): Update to 1.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8f9a463a0f..46cb3e16a5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2062,14 +2062,14 @@ impute compatibly with the substantive model.") (define-public r-pan (package (name "r-pan") - (version "1.4") + (version "1.6") (source (origin (method url-fetch) (uri (cran-uri "pan" version)) (sha256 (base32 - "1p3nigmhrnlch86g89hn7l0wvkifx3k9n59g0psi95yck43kza76")))) + "1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/pan/") -- cgit 1.4.1 From 1b3b2a72eeaa5a134e0db8928f43e42340df36f6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:33:48 +0200 Subject: gnu: r-mice: Update to 3.3.0. * gnu/packages/cran.scm (r-mice): Update to 3.3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 46cb3e16a5..3865ffa150 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2107,14 +2107,14 @@ analysis of multiply imputed data sets.") (define-public r-mice (package (name "r-mice") - (version "3.1.0") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "mice" version)) (sha256 (base32 - "0xpn215yfzib4hw09cwilnyg9zbvq460njavfvm84mvgwbm25byi")))) + "1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) -- cgit 1.4.1 From 69bf449bf10fe3c6ea5fc643ee49ed6ee8e50b84 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:34:29 +0200 Subject: gnu: r-xts: Update to 0.11-0. * gnu/packages/cran.scm (r-xts): Update to 0.11-0. [native-inputs]: Remove. --- gnu/packages/cran.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3865ffa150..afba068dd6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2312,17 +2312,16 @@ training models for classification or ranking.") (define-public r-xts (package (name "r-xts") - (version "0.10-2") + (version "0.11-0") (source (origin (method url-fetch) (uri (cran-uri "xts" version)) (sha256 (base32 - "1i11fczks4lh8rpi6xbm9bm7f3jpcp6xw03kv178g3n3361qhmc1")))) + "1v50yn4bsjzdyk7r90isn6dxmpkapillrhpx3gqsshd180vwzqk9")))) (build-system r-build-system) (propagated-inputs `(("r-zoo" ,r-zoo))) - (native-inputs `(("gfortran" ,gfortran))) (home-page "https://github.com/joshuaulrich/xts") (synopsis "Extensible time series") (description -- cgit 1.4.1 From 6f5b157e3dab1ee7db0e62552ba6350b91c66d1e Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:34:57 +0200 Subject: gnu: r-pillar: Update to 1.3.0. * gnu/packages/cran.scm (r-pillar): Update to 1.3.0. [propagated-inputs]: Add r-fansi. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index afba068dd6..7d2f93a394 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2798,18 +2798,19 @@ display.") (define-public r-pillar (package (name "r-pillar") - (version "1.2.3") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8")))) + "1q6arybmfqxhp5zqj1fri5pb8v7ywcv7bmgf81rrmgl892p4bn5f")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) ("r-crayon" ,r-crayon) + ("r-fansi" ,r-fansi) ("r-rlang" ,r-rlang) ("r-utf8" ,r-utf8))) (home-page "https://github.com/r-lib/pillar") -- cgit 1.4.1 From d97d98e142e40820807b050c656df40a33e8d020 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:35:24 +0200 Subject: gnu: r-tinytex: Update to 0.8. * gnu/packages/cran.scm (r-tinytex): Update to 0.8. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7d2f93a394..b7827931c1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2843,14 +2843,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.6") + (version "0.8") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "16y9dldaff2kx1fkm92p7zlph0dcrdmlmavpdgf5y9jbhmc8g83f")))) + "1bgpr5i5399jf9n6pg2mm4aamisbhppg082ad0wv1j4g0rlxf1gy")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) -- cgit 1.4.1 From e32368c130893da22b35b4318f06606baacd5056 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:35:46 +0200 Subject: gnu: r-metap: Update to 1.0. * gnu/packages/cran.scm (r-metap): Update to 1.0. [propagated-inputs]: Add r-rdpack. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b7827931c1..784f476145 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2867,17 +2867,18 @@ automatically.") (define-public r-metap (package (name "r-metap") - (version "0.9") + (version "1.0") (source (origin (method url-fetch) (uri (cran-uri "metap" version)) (sha256 (base32 - "03vg0mb6q7j2z0pkxykbak0hcp6dcak7zxs1lw9hswz9kqrq5jhz")))) + "18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h")))) (build-system r-build-system) (propagated-inputs - `(("r-lattice" ,r-lattice))) + `(("r-lattice" ,r-lattice) + ("r-rdpack" ,r-rdpack))) (home-page "http://www.dewey.myzen.co.uk/meta/meta.html") (synopsis "Meta-analysis of significance values") (description -- cgit 1.4.1 From be5642eb69d3b0dba1685742291b5d635f004c66 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:36:12 +0200 Subject: gnu: r-statnet-common: Update to 4.1.4. * gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 784f476145..fb398f56b8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2912,14 +2912,14 @@ supports arbitrary vertex/edge/graph attributes.") (define-public r-statnet-common (package (name "r-statnet-common") - (version "4.1.2") + (version "4.1.4") (source (origin (method url-fetch) (uri (cran-uri "statnet.common" version)) (sha256 (base32 - "0h3g687214rlycca0fjrpy1lqbqsrginxqhmhl2mb2jinqqxcfgd")))) + "14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic")))) (properties `((upstream-name . "statnet.common"))) (build-system r-build-system) -- cgit 1.4.1 From 1fe9919a575b5d2d97dc7dee65251a2689709ed4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:36:31 +0200 Subject: gnu: r-tsa: Update to 1.2. * gnu/packages/cran.scm (r-tsa): Update to 1.2. [propagated-inputs]: Remove r-tseries. --- gnu/packages/cran.scm | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fb398f56b8..478df95eaf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3141,21 +3141,20 @@ University Press, 2000.") (define-public r-tsa (package (name "r-tsa") - (version "1.01") + (version "1.2") (source (origin (method url-fetch) (uri (cran-uri "TSA" version)) (sha256 (base32 - "0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx")))) + "0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q")))) (properties `((upstream-name . "TSA"))) (build-system r-build-system) (propagated-inputs `(("r-leaps" ,r-leaps) ("r-locfit" ,r-locfit) - ("r-mgcv" ,r-mgcv) - ("r-tseries" ,r-tseries))) + ("r-mgcv" ,r-mgcv))) (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm") (synopsis "Time series analysis") (description -- cgit 1.4.1 From 19950821d74e5ae008919f28511bb8caa8c516ce Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:37:05 +0200 Subject: gnu: r-heatmaply: Update to 0.15.2. * gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 478df95eaf..706f612344 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3407,14 +3407,14 @@ exponentiation.") (define-public r-heatmaply (package (name "r-heatmaply") - (version "0.14.1") + (version "0.15.2") (source (origin (method url-fetch) (uri (cran-uri "heatmaply" version)) (sha256 (base32 - "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc")))) + "0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) -- cgit 1.4.1 From 7a96c4e0a00e0c527862df289aa48cab231380dc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:39:09 +0200 Subject: gnu: r-fnn: Update to 1.1.2.1. * gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 706f612344..9e7cb04f91 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3763,14 +3763,14 @@ multivariate plot methods.") (define-public r-fnn (package (name "r-fnn") - (version "1.1") + (version "1.1.2.1") (source (origin (method url-fetch) (uri (cran-uri "FNN" version)) (sha256 (base32 - "1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj")))) + "1n61jrcmakqif8f827x4qnlhm2jqpj5fgjj65c4p0kdd8lzw8pqp")))) (properties `((upstream-name . "FNN"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/FNN") -- cgit 1.4.1 From 12132229b0c9c57b1f99db158e02a81922a1aabf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:39:23 +0200 Subject: gnu: r-maptools: Update to 0.9-3. * gnu/packages/cran.scm (r-maptools): Update to 0.9-3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9e7cb04f91..116fdf42cb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4055,14 +4055,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "0.9-2") + (version "0.9-3") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v")))) + "0hxbv01im9zk1qrwgigpc510w6x0kzdzip4gx2jzfqmmwr8m17r8")))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) -- cgit 1.4.1 From 2e6909baf0512cb5f4de9553e6dad3329db7e47c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:39:46 +0200 Subject: gnu: r-later: Update to 0.7.4. * gnu/packages/cran.scm (r-later): Update to 0.7.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 116fdf42cb..82111ff96e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4083,14 +4083,14 @@ exchanging spatial objects with other R packages.") (define-public r-later (package (name "r-later") - (version "0.7.3") + (version "0.7.4") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "04j2phymxgkk4hv9pfa5w3s98w5d7fvm11blrdhxmray4n618msw")))) + "125zc499gj702x2bch95lsfzk2qb4dzv3604x9afym2i3ylrmm64")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) -- cgit 1.4.1 From a9b02ddd73adf938d5ef68658c2873dac64b7f04 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:39:58 +0200 Subject: gnu: r-codedepends: Update to 0.6.5. * gnu/packages/cran.scm (r-codedepends): Update to 0.6.5. [propagated-inputs]: Add r-graph. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 82111ff96e..8eac103109 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4180,18 +4180,19 @@ it.") (define-public r-codedepends (package (name "r-codedepends") - (version "0.5-3") + (version "0.6.5") (source (origin (method url-fetch) (uri (cran-uri "CodeDepends" version)) (sha256 (base32 - "03p82s0abca2jimzqvxdzykfzca7c7fhm5xsjxybcksr4gggr5sc")))) + "0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq")))) (properties `((upstream-name . "CodeDepends"))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) + ("r-graph" ,r-graph) ("r-xml" ,r-xml))) (home-page "http://cran.r-project.org/web/packages/CodeDepends") (synopsis "Analysis of R code for reproducible research and code comprehension") -- cgit 1.4.1 From caaec8865117a15392a5220fe29f0acacef1a318 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:40:20 +0200 Subject: gnu: r-ggpubr: Update to 0.1.8. * gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8. [propagated-inputs]: Add r-glue and r-polynom. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8eac103109..9f3d1bfd09 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4411,14 +4411,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.1.7") + (version "0.1.8") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i")))) + "0psl2zndm4wk6nnj1nv305islpxfvfgd87gjh2ph8yqn4mxpnfi1")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) @@ -4427,8 +4427,10 @@ and adds the annotation to the plot.") ("r-ggrepel" ,r-ggrepel) ("r-ggsci" ,r-ggsci) ("r-ggsignif" ,r-ggsignif) + ("r-glue" ,r-glue) ("r-gridextra" ,r-gridextra) ("r-magrittr" ,r-magrittr) + ("r-polynom" ,r-polynom) ("r-purrr" ,r-purrr) ("r-scales" ,r-scales) ("r-tidyr" ,r-tidyr))) -- cgit 1.4.1 From a207bca2adf5371aabe41f28203c0e3e7bfbacad Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 5 Sep 2018 19:47:19 +0200 Subject: gnu: r-codedepends: Move from cran to bioconductor. * gnu/packages/cran.scm (r-codedepends): Move from here... * gnu/packages/bioconductor.scm (r-codedepends): ...to here. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ gnu/packages/cran.scm | 28 ---------------------------- 2 files changed, 28 insertions(+), 28 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fc01c2283b..a47a5aad05 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -379,6 +379,34 @@ expressed genes in DNA microarray experiments.") "This package implements some simple graph handling capabilities for R.") (license license:artistic2.0))) +(define-public r-codedepends + (package + (name "r-codedepends") + (version "0.6.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "CodeDepends" version)) + (sha256 + (base32 + "0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq")))) + (properties `((upstream-name . "CodeDepends"))) + (build-system r-build-system) + (propagated-inputs + `(("r-codetools" ,r-codetools) + ("r-graph" ,r-graph) + ("r-xml" ,r-xml))) + (home-page "http://cran.r-project.org/web/packages/CodeDepends") + (synopsis "Analysis of R code for reproducible research and code comprehension") + (description + "This package provides tools for analyzing R expressions or blocks of +code and determining the dependencies between them. It focuses on R scripts, +but can be used on the bodies of functions. There are many facilities +including the ability to summarize or get a high-level view of code, +determining dependencies between variables, code improvement suggestions.") + ;; Any version of the GPL + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-chippeakanno (package (name "r-chippeakanno") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9f3d1bfd09..447be5657a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4177,34 +4177,6 @@ to the cluster management tool @code{sfCluster}, but can also used without it.") (license license:gpl2+))) -(define-public r-codedepends - (package - (name "r-codedepends") - (version "0.6.5") - (source - (origin - (method url-fetch) - (uri (cran-uri "CodeDepends" version)) - (sha256 - (base32 - "0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq")))) - (properties `((upstream-name . "CodeDepends"))) - (build-system r-build-system) - (propagated-inputs - `(("r-codetools" ,r-codetools) - ("r-graph" ,r-graph) - ("r-xml" ,r-xml))) - (home-page "http://cran.r-project.org/web/packages/CodeDepends") - (synopsis "Analysis of R code for reproducible research and code comprehension") - (description - "This package provides tools for analyzing R expressions or blocks of -code and determining the dependencies between them. It focuses on R scripts, -but can be used on the bodies of functions. There are many facilities -including the ability to summarize or get a high-level view of code, -determining dependencies between variables, code improvement suggestions.") - ;; Any version of the GPL - (license (list license:gpl2+ license:gpl3+)))) - (define-public r-rappdirs (package (name "r-rappdirs") -- cgit 1.4.1 From 40c10917bc3b8df853001c193da882d643db1bd1 Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 09:24:34 +0200 Subject: gnu: Add r-abcp2. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-abcp2): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 447be5657a..c713a9904b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5411,3 +5411,24 @@ maximum cycle number. The @code{r-abcoptim} implements the Artificial bee colony optimization algorithm @url{http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pdf}. This version is a work-in-progress and is written in R code.") (license license:expat))) + +(define-public r-abcp2 + (package + (name "r-abcp2") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "ABCp2" version)) + (sha256 + (base32 "1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx")))) + (properties `((upstream-name . "ABCp2"))) + (build-system r-build-system) + (propagated-inputs `(("r-mass" ,r-mass))) + (home-page "https://cran.r-project.org/web/packages/ABCp2/") + (synopsis "Approximate Bayesian Computational Model for Estimating P2") + (description + "This package tests the goodness of fit of a distribution of offspring to the Normal, +Poisson, and Gamma distribution and estimates the proportional paternity of the +second male (P2) based on the best fit distribution.") + (license license:gpl2))) -- cgit 1.4.1 From cadc10a513af2624c9233fb2cffb4c4ff5471197 Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 09:32:45 +0200 Subject: gnu: Add r-abcrf. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-abcrf): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c713a9904b..93c111bccc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5432,3 +5432,31 @@ colony optimization algorithm @url{http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pd Poisson, and Gamma distribution and estimates the proportional paternity of the second male (P2) based on the best fit distribution.") (license license:gpl2))) + +(define-public r-abcrf + (package + (name "r-abcrf") + (version "1.7.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abcrf" version)) + (sha256 + (base32 "06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-matrixstats" ,r-matrixstats) + ("r-ranger" ,r-ranger) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-readr" ,r-readr) + ("r-stringr" ,r-stringr))) + (home-page "https://cran.r-project.org/web/packages/abcrf/") + (synopsis "Approximate bayesian computation via random forests") + (description + "This package performs approximate bayesian computation (ABC) model choice and +parameter inference via random forests. This machine learning tool named random +forests (RF) can conduct selection among the highly complex models covered by +ABC algorithms.") + (license license:gpl2+))) -- cgit 1.4.1 From 12da2a5e58c6f518892376df5e1af4a511f12e6b Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 09:39:17 +0200 Subject: gnu: Add r-abctools. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-abctools): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 93c111bccc..aa58efce7c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5460,3 +5460,28 @@ parameter inference via random forests. This machine learning tool named random forests (RF) can conduct selection among the highly complex models covered by ABC algorithms.") (license license:gpl2+))) + +(define-public r-abctools + (package + (name "r-abctools") + (version "1.1.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "abctools" version)) + (sha256 + (base32 "07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97")))) + (build-system r-build-system) + (propagated-inputs + `(("r-abc" ,r-abc) + ("r-abind" ,r-abind) + ("r-hmisc" ,r-hmisc) + ("r-plyr" ,r-plyr))) + (home-page "https://github.com/dennisprangle/abctools/") + (synopsis "Tools for ABC analyses") + (description + "This @code{r-abctools} package provides tools for approximate Bayesian computation +including summary statistic selection and assessing coverage. This includes +recent dimension reduction algorithms to tune the choice of summary statistics, +and coverage methods to tune the choice of threshold.") + (license license:gpl2+))) -- cgit 1.4.1 From 77b33e0ede4bd015d863f0b1f63f492c62fb1943 Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 10:09:12 +0200 Subject: gnu: Add r-ggstance. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit gnu/packages/cran.scm (r-ggstance): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index aa58efce7c..8026f99736 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5485,3 +5485,29 @@ including summary statistic selection and assessing coverage. This includes recent dimension reduction algorithms to tune the choice of summary statistics, and coverage methods to tune the choice of threshold.") (license license:gpl2+))) + +(define-public r-ggstance + (package + (name "r-ggstance") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggstance" version)) + (sha256 + (base32 "0v7f3xdaaridw6d4jvnsfwxmpjrasvx5vl555wsrn50aah17fkvh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-plyr" ,r-plyr) + ("r-rlang" ,r-rlang) + ("r-withr" ,r-withr))) + (home-page "https://cran.r-project.org/web/packages/ggstance/") + (synopsis "Horizontal and vertical versions of @code{r-ggplot2}") + (description + "This package is a @code{r-ggplot2} extension that provides flipped components: +@enumerate +@item horizontal versions of @code{r-ggplot2} stats and @code{r-ggplot2} geoms; +@item vertical versions of @code{r-ggplot2} positions. +@end enumerate") + (license license:gpl3))) -- cgit 1.4.1 From c61f7bc543d98781d9c24989edbfde39af7e7320 Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 10:16:11 +0200 Subject: gnu: Add r-mosaiccore. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-mosaiccore): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8026f99736..3be7fd7d62 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5511,3 +5511,27 @@ and coverage methods to tune the choice of threshold.") @item vertical versions of @code{r-ggplot2} positions. @end enumerate") (license license:gpl3))) + +(define-public r-mosaiccore + (package + (name "r-mosaiccore") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mosaicCore" version)) + (sha256 + (base32 "1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z")))) + (properties `((upstream-name . "mosaicCore"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-lazyeval" ,r-lazyeval) + ("r-mass" ,r-mass) + ("r-rlang" ,r-rlang) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/ProjectMOSAIC/mosaicCore/") + (synopsis "Common utilities for mosaic family packages") + (description + "Common utilities used in other Mosaic family packages are collected here.") + (license license:gpl2+))) -- cgit 1.4.1 From 214452ffd339491f63560d19d2aeab4e668029a4 Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 10:19:55 +0200 Subject: gnu: Add r-ggformula. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-ggformula): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3be7fd7d62..8144391729 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5535,3 +5535,32 @@ and coverage methods to tune the choice of threshold.") (description "Common utilities used in other Mosaic family packages are collected here.") (license license:gpl2+))) + +(define-public r-ggformula + (package + (name "r-ggformula") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggformula" version)) + (sha256 + (base32 "1pmpdfjfbrc6kcpq70cr1kbj2qy711hw940g2aiis6l443z706kh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-ggstance" ,r-ggstance) + ("r-magrittr" ,r-magrittr) + ("r-mosaiccore" ,r-mosaiccore) + ("r-rlang" ,r-rlang) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/ProjectMOSAIC/ggformula/") + (synopsis "Formula interface for the @code{r-ggplot2}") + (description + "The @code{r-ggformula} introduces a family of graphics functions, gf_point(), +gf_density(), and so on, bring the formula interface to ggplot(). This captures +and extends the excellent simplicity of the lattice-graphics formula interface, +while providing the intuitive capabilities of @code{r-ggplot2}.") + (license license:expat))) -- cgit 1.4.1 From 2f195b6f23865417284883bfebc3b697270130f5 Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 10:28:15 +0200 Subject: gnu: Add r-mosaicdata. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-mosaicdata): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8144391729..11822e1aa5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5564,3 +5564,22 @@ gf_density(), and so on, bring the formula interface to ggplot(). This captures and extends the excellent simplicity of the lattice-graphics formula interface, while providing the intuitive capabilities of @code{r-ggplot2}.") (license license:expat))) + +(define-public r-mosaicdata + (package + (name "r-mosaicdata") + (version "0.17.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mosaicData" version)) + (sha256 + (base32 "04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9")))) + (properties `((upstream-name . "mosaicData"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/mosaicData/") + (synopsis "Data sets for project Mosaic") + (description + "This package provides data sets from project Mosaic @url{http://mosaic-web.org} +used to teach mathematics, statistics, computation and modeling.") + (license license:gpl2+))) -- cgit 1.4.1 From 6c6ce2d08832ea4b854fe689ec1b3e4ac3ae60bc Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 10:32:59 +0200 Subject: gnu: Add r-mosaic. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-mosaic): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 40 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 11822e1aa5..62d1d32669 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5583,3 +5583,43 @@ while providing the intuitive capabilities of @code{r-ggplot2}.") "This package provides data sets from project Mosaic @url{http://mosaic-web.org} used to teach mathematics, statistics, computation and modeling.") (license license:gpl2+))) + +(define-public r-mosaic + (package + (name "r-mosaic") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mosaic" version)) + (sha256 + (base32 "10jbrg8kli00kfgbh2f67bymm5cnlancc9dplb1j7fl552yjddn2")))) + (build-system r-build-system) + (propagated-inputs + `(("r-broom" ,r-broom) + ("r-dplyr" ,r-dplyr) + ("r-ggdendro" ,r-ggdendro) + ("r-ggformula" ,r-ggformula) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-glue" ,r-glue) + ("r-gridextra" ,r-gridextra) + ("r-lattice" ,r-lattice) + ("r-latticeextra" ,r-latticeextra) + ("r-lazyeval" ,r-lazyeval) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-mosaiccore" ,r-mosaiccore) + ("r-mosaicdata" ,r-mosaicdata) + ("r-readr" ,r-readr) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/ProjectMOSAIC/mosaic/") + (synopsis "Mathematics, statistics, and computation teaching utilities") + (description + "This package contain data sets and utilities from +@url{http://mosaic-web.org, Project MOSAIC} used to teach mathematics, +statistics, computation and modeling. Project MOSAIC is a community of +educators working to tie together aspects of quantitative work that students +in science, technology, engineering and mathematics will need in their +professional lives, but which are usually taught in isolation, if at all.") + (license license:gpl2+))) -- cgit 1.4.1 From cbb0edd1be1f653d253258dfa90c8b45f288fb1b Mon Sep 17 00:00:00 2001 From: pimi Date: Wed, 29 Aug 2018 10:36:56 +0200 Subject: gnu: Add r-abd. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-abd): New variable. Signed-off-by: Ludovic Courtès --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 62d1d32669..5cd456914b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5623,3 +5623,25 @@ educators working to tie together aspects of quantitative work that students in science, technology, engineering and mathematics will need in their professional lives, but which are usually taught in isolation, if at all.") (license license:gpl2+))) + +(define-public r-abd + (package + (name "r-abd") + (version "0.2-8") + (source + (origin + (method url-fetch) + (uri (cran-uri "abd" version)) + (sha256 + (base32 "191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7")))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-mosaic" ,r-mosaic) + ("r-nlme" ,r-nlme))) + (home-page "https://cran.r-project.org/web/packages/abd/") + (synopsis "Analysis of biological data") + (description + "The @code{r-abd} package contains data sets and sample code for the Analysis of +biological data by Michael Whitlock and Dolph Schluter.") + (license license:gpl2))) -- cgit 1.4.1 From 01af264dcbfb66aa3bc23f56335c6d64163cca8c Mon Sep 17 00:00:00 2001 From: Mădălin Ionel Patrașcu Date: Sat, 8 Sep 2018 22:54:58 +0200 Subject: gnu: Add r-svgui. * gnu/packages/cran.scm (r-svgui): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5cd456914b..ab989abfff 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -33,6 +33,8 @@ #:use-module (guix build-system r) #:use-module (gnu packages compression) #:use-module (gnu packages gcc) + #:use-module (gnu packages gnome) + #:use-module (gnu packages gtk) #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) @@ -5645,3 +5647,24 @@ professional lives, but which are usually taught in isolation, if at all.") "The @code{r-abd} package contains data sets and sample code for the Analysis of biological data by Michael Whitlock and Dolph Schluter.") (license license:gpl2))) + +(define-public r-svgui + (package + (name "r-svgui") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "svGUI" version)) + (sha256 + (base32 "1r7ab0p4yr8q03gj02hmj7k1ghksgkg4nx750c0ajfs2q9y1dxfc")))) + (properties `((upstream-name . "svGUI"))) + (build-system r-build-system) + (home-page "https://github.com/SciViews/svGUI/") + (synopsis "Functions for managing GUI clients in R") + (description + "The SciViews @code{svGUI} package eases the management of Graphical User +Interfaces (GUI) in R. It is independent from any particular GUI widgets. It +centralizes info about GUI elements currently used, and it dispatches GUI +calls to the particular toolkits in use in function of the context.") + (license license:gpl2))) -- cgit 1.4.1 From d1ca3d7297f5d94dad6d9e2200d3d63738e45a2f Mon Sep 17 00:00:00 2001 From: pimi Date: Thu, 6 Sep 2018 17:14:50 +0200 Subject: gnu: Add r-svdialogs. gnu/packages/cran.scm (r-svdialogs): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab989abfff..721f43503a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5668,3 +5668,30 @@ Interfaces (GUI) in R. It is independent from any particular GUI widgets. It centralizes info about GUI elements currently used, and it dispatches GUI calls to the particular toolkits in use in function of the context.") (license license:gpl2))) + +(define-public r-svdialogs + (package + (name "r-svdialogs") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "svDialogs" version)) + (sha256 + (base32 "0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97")))) + (properties `((upstream-name . "svDialogs"))) + (build-system r-build-system) + (inputs + `(("yad" ,yad) + ("zenity" ,zenity))) + (propagated-inputs + `(("r-rstudioapi" ,r-rstudioapi) + ("r-svgui" ,r-svgui))) + (home-page "https://github.com/SciViews/svDialogs/") + (synopsis "Portable dialog boxes") + (description + "This package helps to construct standard dialog boxes for your GUI, including +message boxes, input boxes, list, file or directory selection, and others. In +case R cannot display GUI dialog boxes, a simpler command line version of these +interactive elements is also provided as a fallback solution.") + (license license:gpl2))) -- cgit 1.4.1 From 3cadd3ce93472987fec0bfb4fde9f6937775c7d8 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 3 Sep 2018 14:27:58 +0200 Subject: gnu: Add r-abe. gnu/packages/cran.scm (r-abe): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 721f43503a..fd08f5f549 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5695,3 +5695,25 @@ message boxes, input boxes, list, file or directory selection, and others. In case R cannot display GUI dialog boxes, a simpler command line version of these interactive elements is also provided as a fallback solution.") (license license:gpl2))) + +(define-public r-abe + (package + (name "r-abe") + (version "3.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abe" version)) + (sha256 + (base32 + "1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/abe/") + (synopsis "Augmented backward elimination") + (description + "This package performs augmented backward elimination and checks the +stability of the obtained model. Augmented backward elimination combines +significance or information based criteria with the change in estimate to +either select the optimal model for prediction purposes or to serve as a tool +to obtain a practically sound, highly interpretable model.") + (license license:gpl2+))) -- cgit 1.4.1 From ef26400b66354942ce784fd3a8ab8eb6c19dc4b7 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 3 Sep 2018 15:28:14 +0200 Subject: gnu: Add r-abf2. gnu/packages/cran.scm (r-abf2): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fd08f5f549..7d65dfbdc1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5717,3 +5717,22 @@ significance or information based criteria with the change in estimate to either select the optimal model for prediction purposes or to serve as a tool to obtain a practically sound, highly interpretable model.") (license license:gpl2+))) + +(define-public r-abf2 + (package + (name "r-abf2") + (version "0.7-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abf2" version)) + (sha256 + (base32 "0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/abf2/") + (synopsis "Load gap-free axon @code{r-abf2} files") + (description + "This package loads electrophysiology data from ABF2 files, as created by +Axon Instruments/Molecular Devices software. Only files recorded in gap-free +mode are currently supported.") + (license license:artistic2.0))) -- cgit 1.4.1 From 1efcd0f1ea980472659805d91a2bb486b4136f81 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 3 Sep 2018 15:45:20 +0200 Subject: gnu: Add r-abhgenotyper. * gnu/packages/cran.scm (r-abhgenotyper): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7d65dfbdc1..a05834d7ea 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5736,3 +5736,29 @@ to obtain a practically sound, highly interpretable model.") Axon Instruments/Molecular Devices software. Only files recorded in gap-free mode are currently supported.") (license license:artistic2.0))) + +(define-public r-abhgenotyper + (package + (name "r-abhgenotyper") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ABHgenotypeR" version)) + (sha256 + (base32 "08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l")))) + (properties `((upstream-name . "ABHgenotypeR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-reshape2" ,r-reshape2))) + (home-page "https://github.com/StefanReuscher/ABHgenotypeR/") + (synopsis "Visualize and manipulate ABH genotypes") + (description + "The @code{r-abhgenotyper} package provides simple imputation, +error-correction and plotting capacities for genotype data. The package is +supposed to serve as an intermediate but independent analysis tool between the +TASSEL GBS pipeline and the @code{r-qtl} package. It provides functionalities +not found in either TASSEL or @code{r-qtl} in addition to visualization of +genotypes as \"graphical genotypes\".") + (license license:gpl3))) -- cgit 1.4.1 From ebb3cdb1ea6540a5c2b81e43c63d095f426d524a Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 3 Sep 2018 16:16:38 +0200 Subject: gnu: Add r-abjutils. * gnu/packages/cran.scm (r-abjutils): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a05834d7ea..f8177da013 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5762,3 +5762,38 @@ TASSEL GBS pipeline and the @code{r-qtl} package. It provides functionalities not found in either TASSEL or @code{r-qtl} in addition to visualization of genotypes as \"graphical genotypes\".") (license license:gpl3))) + +(define-public r-abjutils + (package + (name "r-abjutils") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abjutils" version)) + (sha256 + (base32 "0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b")))) + (build-system r-build-system) + (propagated-inputs + `(("r-devtools" ,r-devtools) + ("r-dplyr" ,r-dplyr) + ("r-glue" ,r-glue) + ("r-httr" ,r-httr) + ("r-magrittr" ,r-magrittr) + ("r-plyr" ,r-plyr) + ("r-progress" ,r-progress) + ("r-purrr" ,r-purrr) + ("r-rstudioapi" ,r-rstudioapi) + ("r-scales" ,r-scales) + ("r-stringi" ,r-stringi) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/abjur/abjutils/") + (synopsis "Collection of tools for jurimetrical analysis") + (description + "This package implements general purpose tools, such as functions for +sampling and basic manipulation of Brazilian lawsuits identification number. +It also implements functions for text cleaning, such as accentuation +removal.") + (license license:expat))) -- cgit 1.4.1 From b6afe7b7f540c0effbf570d72d5a1efb45287f01 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 3 Sep 2018 16:59:46 +0200 Subject: gnu: Add r-abnormality. * gnu/packages/cran.scm (r-abnormality): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f8177da013..439cfcb014 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5797,3 +5797,28 @@ sampling and basic manipulation of Brazilian lawsuits identification number. It also implements functions for text cleaning, such as accentuation removal.") (license license:expat))) + +(define-public r-abnormality + (package + (name "r-abnormality") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "abnormality" version)) + (sha256 + (base32 "1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-matrix" ,r-matrix))) + (home-page "https://cran.r-project.org/web/packages/abnormality/") + (synopsis "Measure a subject's abnormality with respect to a reference population") + (description + "This package contains functions to implement the methodology and +considerations laid out by Marks et al. in the article \"Measuring abnormality +in high dimensional spaces: applications in biomechanical gait analysis\". +Using high-dimensional datasets to measure a subject's overall level of +abnormality as compared to a reference population is often needed in outcomes +research.") + (license license:expat))) -- cgit 1.4.1 From 016cabf7bee007fb580d355113de8aa13d0f0a2b Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 10 Sep 2018 13:21:38 +0200 Subject: gnu: Add r-abodoutlier. * gnu/packages/cran.scm (r-abodoutlier): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 439cfcb014..0c6a4908e8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5822,3 +5822,32 @@ Using high-dimensional datasets to measure a subject's overall level of abnormality as compared to a reference population is often needed in outcomes research.") (license license:expat))) + +(define-public r-abodoutlier + (package + (name "r-abodoutlier") + (version "0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abodOutlier" version)) + (sha256 + (base32 "1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj")))) + (properties `((upstream-name . "abodOutlier"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cluster" ,r-cluster))) + (home-page "https://cran.r-project.org/web/packages/abodOutlier/") + (synopsis "Angle-based outlier detection") + (description + "This package performs angle-based outlier detection on a given data +frame. It offers three methods to process data: +@enumerate +@item full but slow implementation using all the data that has cubic + complexity; +@item a fully randomized method; +@item a method using k-nearest neighbours. +@end enumerate +These algorithms are well suited for high dimensional data outlier +detection.") + (license license:expat))) -- cgit 1.4.1 From 03c95f04147b8022983d39d49171db8eb08e8c59 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 10 Sep 2018 14:50:07 +0200 Subject: gnu: Add r-abps. * gnu/packages/cran.scm (r-abps): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0c6a4908e8..5519b85d0b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5851,3 +5851,27 @@ frame. It offers three methods to process data: These algorithms are well suited for high dimensional data outlier detection.") (license license:expat))) + +(define-public r-abps + (package + (name "r-abps") + (version "0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "ABPS" version)) + (sha256 + (base32 "1k3f5i34f4w2khkszb4qhwwcpiy7gsfh82vjr6rypwg6rx5rjclq")))) + (properties `((upstream-name . "ABPS"))) + (build-system r-build-system) + (propagated-inputs `(("r-kernlab" ,r-kernlab))) + (home-page "https://cran.r-project.org/web/packages/ABPS/") + (synopsis "Abnormal blood profile score to detect blood doping") + (description + "This package offers an implementation of the @dfn{Abnormal blood profile score} (ABPS). +The ABPS is a part of the Athlete biological passport program of the World +anti-doping agency, which combines several blood parameters into a single +score in order to detect blood doping. The package also contains functions to +calculate other scores used in anti-doping programs, such as the ratio of +hemoglobin to reticulocytes (OFF-score), as well as example data.") + (license license:gpl2+))) -- cgit 1.4.1 From 26358ac5ab612e3ba5cc965994853f4a6616220c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 20 Sep 2018 13:13:25 +0200 Subject: gnu: Add r-parmigene. * gnu/packages/cran.scm (r-parmigene): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5519b85d0b..58e9ad09c7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5875,3 +5875,23 @@ score in order to detect blood doping. The package also contains functions to calculate other scores used in anti-doping programs, such as the ratio of hemoglobin to reticulocytes (OFF-score), as well as example data.") (license license:gpl2+))) + +(define-public r-parmigene + (package + (name "r-parmigene") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "parmigene" version)) + (sha256 + (base32 + "1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/parmigene/") + (synopsis "Mutual information estimation for gene network reconstruction") + (description + "This package provides a parallel estimation of the mutual information +based on entropy estimates from k-nearest neighbors distances and algorithms +for the reconstruction of gene regulatory networks.") + (license license:agpl3+))) -- cgit 1.4.1 From b2bf43b22aad83c3d64391339f7c5f66c6d58789 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 1 Oct 2018 08:30:14 -0400 Subject: gnu: Add r-pscl. * gnu/packages/cran.scm (r-pscl): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 58e9ad09c7..deb81f2430 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5895,3 +5895,29 @@ hemoglobin to reticulocytes (OFF-score), as well as example data.") based on entropy estimates from k-nearest neighbors distances and algorithms for the reconstruction of gene regulatory networks.") (license license:agpl3+))) + +(define-public r-pscl + (package + (name "r-pscl") + (version "1.5.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "pscl" version)) + (sha256 + (base32 "1phf3awsfr4ncqfqzin5m1pz0g7y1zhbcm2sz7358ssw914fd7rc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass))) + (home-page "https://github.com/atahk/pscl/") + (synopsis "Political science computational laboratory") + (description + "The @code{pscl} is an R package providing classes and methods for: +@enumerate +@item Bayesian analysis of roll call data (item-response models); +@item elementary Bayesian statistics; +@item maximum likelihood estimation of zero-inflated and hurdle models for count +data; +@item utility functions. +@end enumerate") + (license license:gpl2))) -- cgit 1.4.1 From e710d1a4ffe0131d9a59eba1d1ad615f8448f50d Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 1 Oct 2018 08:30:37 -0400 Subject: gnu: Add r-accelmissing. * gnu/packages/cran.scm (r-accelmissing): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index deb81f2430..a38c907cd5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5921,3 +5921,28 @@ data; @item utility functions. @end enumerate") (license license:gpl2))) + +(define-public r-accelmissing + (package + (name "r-accelmissing") + (version "1.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "accelmissing" version)) + (sha256 + (base32 "1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mice" ,r-mice) + ("r-pscl" ,r-pscl))) + (home-page "https://cran.r-project.org/web/packages/accelmissing/") + (synopsis "Missing value imputation for accelerometer data") + (description + "This package provides a statistical method to impute the missing values in +accelerometer data. The methodology includes both parametric and +semi-parametric multiple imputations under the zero-inflated Poisson lognormal +model. It also provides multiple functions to preprocess the accelerometer data +previous to the missing data imputation. These include detecting the wearing +and the non-wearing time, selecting valid days and subjects, and creating plots.") + (license license:gpl2+))) -- cgit 1.4.1 From f359b115c74c9c5fdf482528a0480ed40f5a2446 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 1 Oct 2018 08:49:21 -0400 Subject: gnu: Add r-mhsmm. * gnu/packages/cran.scm (r-mhsmm): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a38c907cd5..82984548a2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5946,3 +5946,26 @@ model. It also provides multiple functions to preprocess the accelerometer data previous to the missing data imputation. These include detecting the wearing and the non-wearing time, selecting valid days and subjects, and creating plots.") (license license:gpl2+))) + +(define-public r-mhsmm + (package + (name "r-mhsmm") + (version "0.4.16") + (source + (origin + (method url-fetch) + (uri (cran-uri "mhsmm" version)) + (sha256 + (base32 "009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs")))) + (build-system r-build-system) + (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm))) + (home-page "https://github.com/jaredo/mhsmm/") + (synopsis "Inference for hidden Markov and semi-Markov models") + (description + "The @code{r-mhsmm} package implements estimation and prediction methods for +hidden Markov and semi-Markov models for multiple observation sequences. Such +techniques are of interest when observed data is thought to be dependent on some +unobserved (or hidden) state. Also, this package is suitable for equidistant +time series data, with multivariate and/or missing data. Allows user defined +emission distributions.") + (license license:gpl2+))) -- cgit 1.4.1 From 16c5285af40f66614cccfe3f916cfe78e49bae16 Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 1 Oct 2018 08:52:01 -0400 Subject: gnu: Add r-nleqslv. * gnu/packages/cran.scm (r-nleqslv): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 82984548a2..b06d22bd51 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5969,3 +5969,25 @@ unobserved (or hidden) state. Also, this package is suitable for equidistant time series data, with multivariate and/or missing data. Allows user defined emission distributions.") (license license:gpl2+))) + +(define-public r-nleqslv + (package + (name "r-nleqslv") + (version "3.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "nleqslv" version)) + (sha256 + (base32 "1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm")))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/nleqslv/") + (synopsis "Solve systems of nonlinear equations") + (description + "The @code{r-nleqslv} package solves a system of nonlinear equations using a +Broyden or a Newton method with a choice of global strategies such as line +search and trust region. There are options for using a numerical or user +supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a +singular or ill-conditioned Jacobian.") + (license license:gpl2+))) -- cgit 1.4.1 From 63ec2c505a29ee8c7c6a7633b054edc41dbc95fa Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 1 Oct 2018 08:52:34 -0400 Subject: gnu: Add r-physicalactivity. * gnu/packages/cran.scm (r-physicalactivity): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b06d22bd51..932d7cb414 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5991,3 +5991,36 @@ search and trust region. There are options for using a numerical or user supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a singular or ill-conditioned Jacobian.") (license license:gpl2+))) + +(define-public r-physicalactivity + (package + (name "r-physicalactivity") + (version "0.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "PhysicalActivity" version)) + (sha256 + (base32 "14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln")))) + (properties + `((upstream-name . "PhysicalActivity"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/PhysicalActivity/") + (synopsis "Procesing accelerometer data for physical activity measurement") + (description + "This @code{r-physicalactivity} package provides a function @code{wearingMarking} +for classification of monitor wear and nonwear time intervals in accelerometer +data collected to assess physical activity. The package also contains functions +for making plots of accelerometer data and obtaining the summary of various +information including daily monitor wear time and the mean monitor wear time +during valid days. The revised package version 0.2-1 improved the functions +regarding speed, robustness and add better support for time zones and daylight +saving. In addition, several functions were added: +@enumerate +@item the @code{markDelivery} can classify days for ActiGraph delivery by mail; +@item the @code{markPAI} can categorize physical activity intensity level based +on user-defined cut-points of accelerometer counts. +@end enumerate + It also supports importing ActiGraph (AGD) files with @code{readActigraph} and +@code{queryActigraph} functions.") + (license license:gpl3+))) -- cgit 1.4.1 From f95d45425152bda85950d2b8f9ead50bdce2e2cc Mon Sep 17 00:00:00 2001 From: pimi Date: Mon, 1 Oct 2018 08:53:00 -0400 Subject: gnu: Add r-acc. * gnu/packages/cran.scm (r-acc): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 932d7cb414..186a52a1f1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6024,3 +6024,36 @@ on user-defined cut-points of accelerometer counts. It also supports importing ActiGraph (AGD) files with @code{readActigraph} and @code{queryActigraph} functions.") (license license:gpl3+))) + +(define-public r-acc + (package + (name "r-acc") + (version "1.3.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "acc" version)) + (sha256 + (base32 "1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m")))) + (build-system r-build-system) + (propagated-inputs + `(("r-circlize" ,r-circlize) + ("r-dbi" ,r-dbi) + ("r-ggplot2" ,r-ggplot2) + ("r-iterators" ,r-iterators) + ("r-mhsmm" ,r-mhsmm) + ("r-nleqslv" ,r-nleqslv) + ("r-physicalactivity" ,r-physicalactivity) + ("r-plyr" ,r-plyr) + ("r-r-utils" ,r-r-utils) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rsqlite" ,r-rsqlite) + ("r-zoo" ,r-zoo))) + (home-page "https://cran.r-project.org/web/packages/acc/") + (synopsis "Exploring accelerometer data") + (description + "This package processes accelerometer data from uni-axial and tri-axial devices +and generates data summaries. Also, includes functions to plot, analyze, and +simulate accelerometer data.") + (license license:gpl2+))) -- cgit 1.4.1 From f6890c08912c7b2a2b7f6c1cdeda412ff73e0b1d Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 11 Sep 2018 15:18:25 +0200 Subject: gnu: Add r-rbenchmark. gnu/packages/cran.scm (r-rbenchmark): New variable. Signed-off-by: Leo Famulari --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 186a52a1f1..76c9c734f2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6057,3 +6057,28 @@ on user-defined cut-points of accelerometer counts. and generates data summaries. Also, includes functions to plot, analyze, and simulate accelerometer data.") (license license:gpl2+))) + +(define-public r-rbenchmark + (package + (name "r-rbenchmark") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rbenchmark" version)) + (sha256 + (base32 "010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/rbenchmark/") + (synopsis "Benchmarking routine for R") + (description + "This @code{r-rbenchmark} package is inspired by the Perl module Benchmark, +and is intended to facilitate benchmarking of arbitrary R code. The library +consists of just one function, benchmark, which is a simple wrapper around +system.time. Given a specification of the benchmarking process (counts of +replications, evaluation environment) and an arbitrary number of expressions, +benchmark evaluates each of the expressions in the specified environment, +replicating the evaluation as many times as specified, and returning the results +conveniently wrapped into a data frame.") + (license license:gpl2+))) + -- cgit 1.4.1 From 7af2dd38268e8d043352a6f5845cce1ee8f2fe4f Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 11 Sep 2018 15:18:26 +0200 Subject: gnu: Add r-dvmisc. gnu/packages/cran.scm (r-dvmisc): New variable. Signed-off-by: Leo Famulari --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 76c9c734f2..2db310b636 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6082,3 +6082,28 @@ replicating the evaluation as many times as specified, and returning the results conveniently wrapped into a data frame.") (license license:gpl2+))) +(define-public r-dvmisc + (package + (name "r-dvmisc") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "dvmisc" version)) + (sha256 + (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-rbenchmark" ,r-rbenchmark) + ("r-rcpp" ,r-rcpp))) + (home-page "https://cran.r-project.org/web/packages/dvmisc/") + (synopsis "Faster computation of common statistics and miscellaneous functions") + (description + "This package implements faster versions of base R functions (e.g. mean, standard +deviation, covariance, weighted mean), mostly written in C++, along with +miscellaneous functions for various purposes (e.g. create the histogram with +fitted probability density function or probability mass function curve, create +the body mass index groups, assess the linearity assumption in logistic +regression).") + (license license:gpl2))) -- cgit 1.4.1 From d8d8844ec12c017480e83cd541e98b55e18a17f4 Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 11 Sep 2018 15:18:27 +0200 Subject: gnu: Add r-accelerometry. gnu/packages/cran.scm (r-accelerometry): New variable. Signed-off-by: Leo Famulari --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2db310b636..b567fdc0ce 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6107,3 +6107,27 @@ fitted probability density function or probability mass function curve, create the body mass index groups, assess the linearity assumption in logistic regression).") (license license:gpl2))) + +(define-public r-accelerometry + (package + (name "r-accelerometry") + (version "3.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "accelerometry" version)) + (sha256 + (base32 "13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip")))) + (build-system r-build-system) + (propagated-inputs + `(("r-dvmisc" ,r-dvmisc) + ("r-rcpp" ,r-rcpp))) + (home-page "https://cran.r-project.org/web/packages/accelerometry/") + (synopsis "Functions for processing accelerometer data") + (description + "This package provides a collection of functions that perform operations on +time-series accelerometer data, such as identify the non-wear time, flag minutes +that are part of an activity bout, and find the maximum 10-minute average count +value. The functions are generally very flexible, allowing for a variety of +algorithms to be implemented.") + (license license:gpl3))) -- cgit 1.4.1 From 1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010 Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 2 Oct 2018 16:16:45 -0400 Subject: gnu: Add r-absim. * gnu/packages/cran.scm (r-absim): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b567fdc0ce..4da1664c67 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6131,3 +6131,31 @@ that are part of an activity bout, and find the maximum 10-minute average count value. The functions are generally very flexible, allowing for a variety of algorithms to be implemented.") (license license:gpl3))) + +(define-public r-absim + (package + (name "r-absim") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbSim" version)) + (sha256 + (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m")))) + (properties `((upstream-name . "AbSim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-powerlaw" ,r-powerlaw))) + (home-page "https://cran.r-project.org/web/packages/AbSim/") + (synopsis "Time resolved simulations of antibody repertoires") + (description + "This package provides simulation methods for the evolution of antibody repertoires. + The heavy and light chain variable region of both human and C57BL/6 mice can +be simulated in a time-dependent fashion. Both single lineages using one set of +V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins +with an initial V-D-J recombination event, starting the first phylogenetic tree. + Upon completion, the main loop of the algorithm begins, with each iteration +representing one simulated time step. Various mutation events are possible at +each time step, contributing to a diverse final repertoire.") + (license license:gpl2))) -- cgit 1.4.1 From c2ffc4fb53a23c4db975a52f85686ed4b194cfcf Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 2 Oct 2018 16:26:10 -0400 Subject: gnu: Add r-ac3net. * gnu/packages/cran.scm (r-ac3net): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4da1664c67..2486a48673 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6159,3 +6159,24 @@ with an initial V-D-J recombination event, starting the first phylogenetic tree. representing one simulated time step. Various mutation events are possible at each time step, contributing to a diverse final repertoire.") (license license:gpl2))) + +(define-public r-ac3net + (package + (name "r-ac3net") + (version "1.2.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "Ac3net" version)) + (sha256 + (base32 "1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz")))) + (properties `((upstream-name . "Ac3net"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table))) + (home-page "https://cran.r-project.org/web/packages/Ac3net/") + (synopsis "Inferring directional conservative causal core gene networks") + (description "This package infers directional Conservative causal core +(gene) networks (C3NET). This is a version of the algorithm C3NET with +directional network.") + (license license:gpl3+))) -- cgit 1.4.1 From da33385959502a3f897a2a6a1bf92dc5f02b3b9a Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 2 Oct 2018 16:27:12 -0400 Subject: gnu: Add r-aca. * gnu/packages/cran.scm (r-aca): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2486a48673..26b3b0377b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6180,3 +6180,23 @@ each time step, contributing to a diverse final repertoire.") (gene) networks (C3NET). This is a version of the algorithm C3NET with directional network.") (license license:gpl3+))) + +(define-public r-aca + (package + (name "r-aca") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ACA" version)) + (sha256 + (base32 "1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq")))) + (properties `((upstream-name . "ACA"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/ACA/") + (synopsis "Abrupt change-point or aberration detection in point series") + (description + "This package offers an interactive function for the detection of breakpoints in +series.") + ;; Any version of the GPL + (license (list license:gpl2+ license:gpl3+)))) -- cgit 1.4.1 From 9c1c2108a5523015fd83e599b263dfb1ad348324 Mon Sep 17 00:00:00 2001 From: pimi Date: Tue, 2 Oct 2018 16:28:42 -0400 Subject: gnu: Add r-acceptancesampling. * gnu/packages/cran.scm (r-acceptancesampling): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 26b3b0377b..52b3d52bac 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6200,3 +6200,31 @@ directional network.") series.") ;; Any version of the GPL (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-acceptancesampling + (package + (name "r-acceptancesampling") + (version "1.0-5") + (source + (origin + (method url-fetch) + (uri (cran-uri "AcceptanceSampling" version)) + (sha256 + (base32 "18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x")))) + (properties + `((upstream-name . "AcceptanceSampling"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/AcceptanceSampling/") + (synopsis "Creation and evaluation of acceptance sampling plans") + (description + "This @code{r-acceptancesampling} provides functionality for creating and evaluating +acceptance sampling plans. Acceptance sampling is a methodology commonly used +in quality control and improvement. International standards of acceptance +sampling provide sampling plans for specific circumstances. The aim of this +package is to provide an easy-to-use interface to visualize single, double or +multiple sampling plans. In addition, methods have been provided to enable the +user to assess sampling plans against pre-specified levels of performance, as +measured by the probability of acceptance for a given level of quality in the +lot.") + (license license:gpl3+))) + -- cgit 1.4.1 From 63781c5748b108db5ceab02ce2d201e901ff10a4 Mon Sep 17 00:00:00 2001 From: Leo Famulari Date: Tue, 2 Oct 2018 16:29:25 -0400 Subject: gnu: Add r-acclma. * gnu/packages/cran.scm (r-acclma): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 52b3d52bac..a1bf750da6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6228,3 +6228,31 @@ measured by the probability of acceptance for a given level of quality in the lot.") (license license:gpl3+))) +(define-public r-acclma + (package + (name "r-acclma") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ACCLMA" version)) + (sha256 + (base32 "1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v")))) + (properties `((upstream-name . "ACCLMA"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/ACCLMA/") + (synopsis "ACC & LMA graph plotting") + (description + "This package contains a function that imports data from a @acronym{Comma-Separated +Values, @acronym{CSV}} file, or uses manually entered data from the format (x, +y, weight) and plots the appropriate @acronym{Absolute Concentration Curve, +@acronym{ACC}} vs @acronym{Line of Independence, @acronym{LOI}} graph and +@acronym{@acronym{LOI} Minus @acronym{ACC}, @acronym{LMA}} graph. The main +function is plotLMA (source file, header) that takes a data set and plots the +appropriate @acronym{LMA} and @acronym{ACC} graphs. If no source file (a +string) was passed, a manual data entry window is opened. The header parameter +indicates by TRUE/FALSE (false by default) if the source @acronym{CSV} file has +a header row or not. The dataset should contain only one independent variable +(x) and one dependent variable (y) and can contain a weight for each +observation.") + (license license:gpl2))) -- cgit 1.4.1 From 666fb2884ab487ae69ed3541c4adaf0b4fb6ef41 Mon Sep 17 00:00:00 2001 From: Ludovic Courtès Date: Thu, 4 Oct 2018 09:46:43 +0200 Subject: gnu: r-acclma: Fix uses of @acronym in description. * gnu/packages/cran.scm (r-acclma)[description]: Fix order of arguments to @acronym. The wrong order was causing 'stexi->shtml' to fail (match error). --- gnu/packages/cran.scm | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a1bf750da6..efcc2dccb5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6243,12 +6243,12 @@ lot.") (home-page "https://cran.r-project.org/web/packages/ACCLMA/") (synopsis "ACC & LMA graph plotting") (description - "This package contains a function that imports data from a @acronym{Comma-Separated -Values, @acronym{CSV}} file, or uses manually entered data from the format (x, -y, weight) and plots the appropriate @acronym{Absolute Concentration Curve, -@acronym{ACC}} vs @acronym{Line of Independence, @acronym{LOI}} graph and -@acronym{@acronym{LOI} Minus @acronym{ACC}, @acronym{LMA}} graph. The main -function is plotLMA (source file, header) that takes a data set and plots the + "This package contains a function that imports data from a @acronym{CSV, +Comma-Separated Values} file, or uses manually entered data from the format (x, +y, weight) and plots the appropriate @acronym{ACC, Absolute Concentration +Curve} vs @acronym{LOI, Line of Independence} graph and +@acronym{LMA, @acronym{LOI} Minus @acronym{ACC}} graph. The main +function is @code{plotLMA} (source file, header) that takes a data set and plots the appropriate @acronym{LMA} and @acronym{ACC} graphs. If no source file (a string) was passed, a manual data entry window is opened. The header parameter indicates by TRUE/FALSE (false by default) if the source @acronym{CSV} file has -- cgit 1.4.1 From b55697fbb430ae9a973eeae91f09213d1e603a9e Mon Sep 17 00:00:00 2001 From: Laura Lazzati Date: Tue, 23 Oct 2018 01:59:22 -0300 Subject: gnu: Add r-aspi. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-aspi): New variable. Signed-off-by: Gábor Boskovits --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index efcc2dccb5..73680a7453 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9,6 +9,7 @@ ;;; Copyright © 2018 Charlie Ritter ;;; Copyright © 2018 Konrad Hinsen ;;; Copyright © 2018 Mădălin Ionel Patrașcu +;;; Copyright © 2018 Laura Lazzati ;;; ;;; This file is part of GNU Guix. ;;; @@ -6256,3 +6257,23 @@ a header row or not. The dataset should contain only one independent variable (x) and one dependent variable (y) and can contain a weight for each observation.") (license license:gpl2))) + +(define-public r-aspi + (package + (name "r-aspi") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "aspi" version)) + (sha256 + (base32 "0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87")))) + (build-system r-build-system) + (home-page + "https://cran.r-project.org/web/packages/aspi/") + (synopsis + "Analysis of symmetry of parasitic infections") + (description + "This package provides tools for the analysis and visualization of bilateral + asymmetry in parasitic infections.") + (license license:gpl3+))) -- cgit 1.4.1 From 9bf745c9317a4032b01c022a6ab7b1c6e258259d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:14:38 +0200 Subject: gnu: r-sjlabelled: Update to 1.0.14. * gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 73680a7453..02a2c9539f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4775,14 +4775,14 @@ other add-on packages.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.0.13") + (version "1.0.14") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "0xizj7mrhnbn8kwjgm076si9w68a7lgrx4vj1sbqmv9jx055h8wv")))) + "0ayfzhm9bwjfaarq5z0gvn9kapjwj3532azgin97nr5fnjdhvgaw")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) -- cgit 1.4.1 From 69bb2d99661a3d65a1993f66bbbdb8e6b7c17ecd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:14:54 +0200 Subject: gnu: r-sjmisc: Update to 2.7.5. * gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 02a2c9539f..f6dc1514de 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4808,14 +4808,14 @@ vice versa), or to deal with multiple declared missing values.") (define-public r-sjmisc (package (name "r-sjmisc") - (version "2.7.4") + (version "2.7.5") (source (origin (method url-fetch) (uri (cran-uri "sjmisc" version)) (sha256 (base32 - "11cy09k1d2y5wwqvafqxr01hzk4x68ji2pqlwj7fnpw27i3ap4q4")))) + "05fjqfr2rfk11065zqkzb9mbqd6mgdkw9jdhq3by425a7f8m2dcg")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) -- cgit 1.4.1 From 302db5855226f2f82597de6887a450f8a900faff Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:15:10 +0200 Subject: gnu: Add r-sandwich. * gnu/packages/cran.scm (r-sandwich): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f6dc1514de..f1948a85e5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6277,3 +6277,25 @@ observation.") "This package provides tools for the analysis and visualization of bilateral asymmetry in parasitic infections.") (license license:gpl3+))) + +(define-public r-sandwich + (package + (name "r-sandwich") + (version "2.5-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "sandwich" version)) + (sha256 + (base32 + "168kq5kk34xbhfsxsanard9zriyp6cw0s09ralzb57kk42pl9hbc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-zoo" ,r-zoo))) + (home-page "https://cran.r-project.org/web/packages/sandwich/") + (synopsis "Robust Covariance Matrix Estimators") + (description + "This package provides model-robust standard error estimators for +cross-sectional, time series, clustered, panel, and longitudinal data.") + ;; Either version of the license. + (license (list license:gpl2 license:gpl3)))) -- cgit 1.4.1 From 6ce07cf99dc417067f0e76efc7fc53f8292377b7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:15:23 +0200 Subject: gnu: Add r-th-data. * gnu/packages/cran.scm (r-th-data): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f1948a85e5..0a4ed76aad 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6299,3 +6299,26 @@ observation.") cross-sectional, time series, clustered, panel, and longitudinal data.") ;; Either version of the license. (license (list license:gpl2 license:gpl3)))) + +(define-public r-th-data + (package + (name "r-th-data") + (version "1.0-9") + (source + (origin + (method url-fetch) + (uri (cran-uri "TH.data" version)) + (sha256 + (base32 + "03xfvww0krw0fn76qmmvrj7dx4shin57qafwhkrggfg25hbqlcfq")))) + (properties `((upstream-name . "TH.data"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-survival" ,r-survival))) + (home-page "https://cran.r-project.org/web/packages/TH.data/") + (synopsis "Shared data sets") + (description + "This package contains supporting data sets that are used in other +packages maintained by Torsten Hothorn.") + (license license:gpl3))) -- cgit 1.4.1 From 7753b5436687bdf913439d1ab74b13b0b39b630b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:15:37 +0200 Subject: gnu: Add r-multcomp. * gnu/packages/cran.scm (r-multcomp): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0a4ed76aad..361140c822 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6322,3 +6322,31 @@ cross-sectional, time series, clustered, panel, and longitudinal data.") "This package contains supporting data sets that are used in other packages maintained by Torsten Hothorn.") (license license:gpl3))) + +(define-public r-multcomp + (package + (name "r-multcomp") + (version "1.4-8") + (source + (origin + (method url-fetch) + (uri (cran-uri "multcomp" version)) + (sha256 + (base32 + "0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252")))) + (build-system r-build-system) + (propagated-inputs + `(("r-codetools" ,r-codetools) + ("r-mvtnorm" ,r-mvtnorm) + ("r-sandwich" ,r-sandwich) + ("r-survival" ,r-survival) + ("r-th-data" ,r-th-data))) + (home-page "https://cran.r-project.org/web/packages/multcomp/") + (synopsis "Simultaneous inference in general parametric models") + (description + "Simultaneous tests and confidence intervals for general linear +hypotheses in parametric models, including linear, generalized linear, linear +mixed effects, and survival models. The package includes demos reproducing +analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz, +Hothorn, Westfall, 2010, CRC Press).") + (license license:gpl2))) -- cgit 1.4.1 From 55a08dceb5c1522dcbcb2c49a2ca8f261abe8747 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:15:47 +0200 Subject: gnu: Add r-emmeans. * gnu/packages/cran.scm (r-emmeans): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 361140c822..b89a477fbd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6350,3 +6350,30 @@ mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book \"Multiple Comparisons Using R\" (Bretz, Hothorn, Westfall, 2010, CRC Press).") (license license:gpl2))) + +(define-public r-emmeans + (package + (name "r-emmeans") + (version "1.2.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "emmeans" version)) + (sha256 + (base32 + "01g6albv9whpdsj4j7c3q02pwdlkscjl5d2l8z96qafw7n9gml6g")))) + (build-system r-build-system) + (propagated-inputs + `(("r-estimability" ,r-estimability) + ("r-mvtnorm" ,r-mvtnorm) + ("r-plyr" ,r-plyr) + ("r-xtable" ,r-xtable))) + (home-page "https://github.com/rvlenth/emmeans") + (synopsis "Estimated marginal means, aka least-squares means") + (description + "This package provides tools to obtain @dfn{estimated marginal +means} (EMMs) for many linear, generalized linear, and mixed models. It can +be used to compute contrasts or linear functions of EMMs, trends, and +comparisons of slopes.") + ;; Either version of the license. + (license (list license:gpl2 license:gpl3)))) -- cgit 1.4.1 From 63fcb88a502054b38cca0e7c4db83529800282f7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:15:56 +0200 Subject: gnu: Add r-pwr. * gnu/packages/cran.scm (r-pwr): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b89a477fbd..1510d0edb3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6377,3 +6377,24 @@ be used to compute contrasts or linear functions of EMMs, trends, and comparisons of slopes.") ;; Either version of the license. (license (list license:gpl2 license:gpl3)))) + +(define-public r-pwr + (package + (name "r-pwr") + (version "1.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "pwr" version)) + (sha256 + (base32 + "0r5g781lr677vp3zyhgmi7r68c87l8gd05l1s3ffnxgn5wf043sm")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/heliosdrm/pwr") + (synopsis "Basic functions for power analysis") + (description + "This package provides power analysis functions along the lines of +Cohen (1988).") + (license license:gpl3+))) -- cgit 1.4.1 From bd531e83d1c4320ed8ce031c9b7d3261268fd793 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:16:06 +0200 Subject: gnu: Add r-coin. * gnu/packages/cran.scm (r-coin): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1510d0edb3..69ba63d082 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6398,3 +6398,28 @@ comparisons of slopes.") "This package provides power analysis functions along the lines of Cohen (1988).") (license license:gpl3+))) + +(define-public r-coin + (package + (name "r-coin") + (version "1.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "coin" version)) + (sha256 + (base32 + "1fq58793bymzig1syjg2lvn6hsxfwkhh00jfrchh3c0y7rfhc66m")))) + (build-system r-build-system) + (propagated-inputs + `(("r-modeltools" ,r-modeltools) + ("r-multcomp" ,r-multcomp) + ("r-mvtnorm" ,r-mvtnorm) + ("r-survival" ,r-survival))) + (home-page "http://coin.r-forge.r-project.org") + (synopsis "Conditional inference procedures in a permutation test framework") + (description + "This package provides conditional inference procedures for the general +independence problem including two-sample, K-sample (non-parametric ANOVA), +correlation, censored, ordered and multivariate problems.") + (license license:gpl2))) -- cgit 1.4.1 From 9b3ecb60e2bb5eabaa70d0682e99e735561ce48c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:16:17 +0200 Subject: gnu: Add r-bayesplot. * gnu/packages/cran.scm (r-bayesplot): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 69ba63d082..a75c19a1f1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -36,6 +36,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages gnome) #:use-module (gnu packages gtk) + #:use-module (gnu packages haskell) #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) @@ -6423,3 +6424,34 @@ Cohen (1988).") independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.") (license license:gpl2))) + +(define-public r-bayesplot + (package + (name "r-bayesplot") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "bayesplot" version)) + (sha256 + (base32 + "0in9cq2ybpa7njrwqx4l6nc8i01cjswsvzwlyiw465pi74aapr57")))) + (build-system r-build-system) + (inputs + `(("pandoc" ,ghc-pandoc) + ("pandoc-citeproc" ,ghc-pandoc-citeproc))) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-ggridges" ,r-ggridges) + ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang))) + (home-page "http://mc-stan.org/bayesplot") + (synopsis "Plotting for Bayesian models") + (description + "This package provides plotting functions for posterior analysis, model +checking, and MCMC diagnostics. The package is designed not only to provide +convenient functionality for users, but also a common set of functions that +can be easily used by developers working on a variety of R packages for +Bayesian modeling.") + (license license:gpl3+))) -- cgit 1.4.1 From 3b8a3f554811f675bc68d997476dabd8bf82ae1f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:16:34 +0200 Subject: gnu: Add r-tmb. * gnu/packages/cran.scm (r-tmb): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a75c19a1f1..77eb389bdd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6455,3 +6455,31 @@ convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling.") (license license:gpl3+))) + +(define-public r-tmb + (package + (name "r-tmb") + (version "1.7.14") + (source + (origin + (method url-fetch) + (uri (cran-uri "TMB" version)) + (sha256 + (base32 + "0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl")))) + (properties `((upstream-name . "TMB"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix) + ("r-rcppeigen" ,r-rcppeigen))) + (home-page "http://tmb-project.org") + (synopsis "Template model builder: a general random effect tool") + (description + "With this tool, a user should be able to quickly implement complex +random effect models through simple C++ templates. The package combines +@code{CppAD} (C++ automatic differentiation), @code{Eigen} (templated +matrix-vector library) and @code{CHOLMOD} (sparse matrix routines available +from R) to obtain an efficient implementation of the applied Laplace +approximation with exact derivatives. Key features are: Automatic sparseness +detection, parallelism through BLAS and parallel user templates.") + (license license:gpl2))) -- cgit 1.4.1 From aa4bde0b3a8e012124fabdfd0c74a76abd24597d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:16:44 +0200 Subject: gnu: Add r-sjstats. * gnu/packages/cran.scm (r-sjstats): New variable. --- gnu/packages/cran.scm | 46 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 77eb389bdd..70cba10132 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6483,3 +6483,49 @@ from R) to obtain an efficient implementation of the applied Laplace approximation with exact derivatives. Key features are: Automatic sparseness detection, parallelism through BLAS and parallel user templates.") (license license:gpl2))) + +(define-public r-sjstats + (package + (name "r-sjstats") + (version "0.17.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "sjstats" version)) + (sha256 + (base32 + "0s9b0xr8gmcm0kh48jkwk8ns0lqknd8kpys4f7czf0xwzmcx2n1z")))) + (build-system r-build-system) + (propagated-inputs + `(("r-bayesplot" ,r-bayesplot) + ("r-broom" ,r-broom) + ("r-coin" ,r-coin) + ("r-crayon" ,r-crayon) + ("r-dplyr" ,r-dplyr) + ("r-emmeans" ,r-emmeans) + ("r-glmmtmb" ,r-glmmtmb) + ("r-lme4" ,r-lme4) + ("r-magrittr" ,r-magrittr) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-modelr" ,r-modelr) + ("r-nlme" ,r-nlme) + ("r-purrr" ,r-purrr) + ("r-pwr" ,r-pwr) + ("r-rlang" ,r-rlang) + ("r-sjlabelled" ,r-sjlabelled) + ("r-sjmisc" ,r-sjmisc) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/strengejacke/sjstats") + (synopsis "Functions for common statistical computations") + (description + "This package provides a collection of convenient functions for common +statistical computations, which are not directly provided by R's @code{base} +or @code{stats} packages. This package aims at providing, first, shortcuts +for statistical measures, which otherwise could only be calculated with +additional effort. Second, these shortcut functions are generic, and can be +applied not only to vectors, but also to other objects as well. The focus of +most functions lies on summary statistics or fit measures for regression +models, including generalized linear models, mixed effects models and Bayesian +models.") + (license license:gpl3))) -- cgit 1.4.1 From 413944234cf736f6e180a3c075df7e8229727d8f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:16:54 +0200 Subject: gnu: Add r-glmmtmb. * gnu/packages/cran.scm (r-glmmtmb): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 70cba10132..4cd11bfd24 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6529,3 +6529,35 @@ most functions lies on summary statistics or fit measures for regression models, including generalized linear models, mixed effects models and Bayesian models.") (license license:gpl3))) + +(define-public r-glmmtmb + (package + (name "r-glmmtmb") + (version "0.2.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "glmmTMB" version)) + (sha256 + (base32 + "1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5")))) + (properties `((upstream-name . "glmmTMB"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lme4" ,r-lme4) + ("r-matrix" ,r-matrix) + ("r-nlme" ,r-nlme) + ("r-rcppeigen" ,r-rcppeigen) + ("r-tmb" ,r-tmb))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/glmmTMB") + (synopsis "Generalized linear mixed models") + (description + "Fit linear and generalized linear mixed models with various extensions, +including zero-inflation. The models are fitted using maximum likelihood +estimation via the Template Model Builder. Random effects are assumed to be +Gaussian on the scale of the linear predictor and are integrated out using the +Laplace approximation. Gradients are calculated using automatic +differentiation.") + (license license:agpl3+))) -- cgit 1.4.1 From 489a6178e68a3a740ecf5c076d05b352bc448fae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:17:04 +0200 Subject: gnu: Add r-ggeffects. * gnu/packages/cran.scm (r-ggeffects): New variable. --- gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4cd11bfd24..a28b8195d1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6561,3 +6561,42 @@ Gaussian on the scale of the linear predictor and are integrated out using the Laplace approximation. Gradients are calculated using automatic differentiation.") (license license:agpl3+))) + +(define-public r-ggeffects + (package + (name "r-ggeffects") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggeffects" version)) + (sha256 + (base32 + "00l02g7yssqxmcmbrzk2wsj3i9ywd0xsy0rmbfh57q1qi76a1wq1")))) + (build-system r-build-system) + (propagated-inputs + `(("r-crayon" ,r-crayon) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-lme4" ,r-lme4) + ("r-magrittr" ,r-magrittr) + ("r-mass" ,r-mass) + ("r-prediction" ,r-prediction) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-scales" ,r-scales) + ("r-sjlabelled" ,r-sjlabelled) + ("r-sjmisc" ,r-sjmisc) + ("r-sjstats" ,r-sjstats) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/strengejacke/ggeffects") + (synopsis "Create tidy data frames of marginal effects for ggplot") + (description + "This package provides tools to compute marginal effects from statistical +models and return the result as tidy data frames. These data frames are ready +to use with the @code{ggplot2} package. Marginal effects can be calculated +for many different models. Interaction terms, splines and polynomial terms +are also supported. The two main functions are @code{ggpredict()} and +@code{ggeffect()}. There is a generic @code{plot()} method to plot the +results using @code{ggplot2}.") + (license license:gpl3))) -- cgit 1.4.1 From 7b63047c943a68717b1fc21dc078e44c2415e694 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 25 Oct 2018 05:17:16 +0200 Subject: gnu: Add r-sjplot. * gnu/packages/cran.scm (r-sjplot): New variable. --- gnu/packages/cran.scm | 47 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a28b8195d1..1dcb0cceef 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6600,3 +6600,50 @@ are also supported. The two main functions are @code{ggpredict()} and @code{ggeffect()}. There is a generic @code{plot()} method to plot the results using @code{ggplot2}.") (license license:gpl3))) + +(define-public r-sjplot + (package + (name "r-sjplot") + (version "2.6.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "sjPlot" version)) + (sha256 + (base32 + "13qvw2s3r96qfi8kfsn76m050ccnmckl31a9qv94xws8da99v2fk")))) + (properties `((upstream-name . "sjPlot"))) + (build-system r-build-system) + (propagated-inputs + `(("r-broom" ,r-broom) + ("r-dplyr" ,r-dplyr) + ("r-forcats" ,r-forcats) + ("r-ggeffects" ,r-ggeffects) + ("r-ggplot2" ,r-ggplot2) + ("r-glmmtmb" ,r-glmmtmb) + ("r-knitr" ,r-knitr) + ("r-lme4" ,r-lme4) + ("r-magrittr" ,r-magrittr) + ("r-mass" ,r-mass) + ("r-modelr" ,r-modelr) + ("r-nlme" ,r-nlme) + ("r-psych" ,r-psych) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-scales" ,r-scales) + ("r-sjlabelled" ,r-sjlabelled) + ("r-sjmisc" ,r-sjmisc) + ("r-sjstats" ,r-sjstats) + ("r-tidyr" ,r-tidyr))) + (home-page "https://strengejacke.github.io/sjPlot/") + (synopsis "Data visualization for statistics in social science") + (description + "This package represents a collection of plotting and table output +functions for data visualization. Results of various statistical +analyses (that are commonly used in social sciences) can be visualized using +this package, including simple and cross tabulated frequencies, histograms, +box plots, (generalized) linear models, mixed effects models, principal +component analysis and correlation matrices, cluster analyses, scatter plots, +stacked scales, effects plots of regression models (including interaction +terms) and much more. This package supports labelled data.") + (license license:gpl3))) -- cgit 1.4.1 From b5a310056cf942a5675bf3c862ece273c28a4ba4 Mon Sep 17 00:00:00 2001 From: Mădălin Ionel Patrașcu Date: Sat, 27 Oct 2018 18:44:31 +0200 Subject: gnu: Add r-quic. * gnu/packages/cran.scm (r-quic): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1dcb0cceef..3cf1e09df1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6162,6 +6162,29 @@ representing one simulated time step. Various mutation events are possible at each time step, contributing to a diverse final repertoire.") (license license:gpl2))) +(define-public r-quic + (package + (name "r-quic") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "QUIC" version)) + (sha256 + (base32 "021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c")))) + (properties `((upstream-name . "QUIC"))) + (build-system r-build-system) + (home-page "https://www.cs.utexas.edu/users/sustik/QUIC/") + (synopsis "Regularized sparse inverse covariance matrix estimation") + (description + "This package implements the regularized Gaussian maximum likelihood +estimation of the inverse of a covariance matrix. It uses Newton's method and +coordinate descent to solve the regularized inverse covariance matrix +estimation problem.") + ;; The project home page states that the release is under GPLv3 or later. + ;; The CRAN page only says GPL-3. + (license license:gpl3+))) + (define-public r-ac3net (package (name "r-ac3net") -- cgit 1.4.1 From b509df82de369262403acf2e74f1e80fdc02c96d Mon Sep 17 00:00:00 2001 From: Mădălin Ionel Patrașcu Date: Sat, 27 Oct 2018 18:49:29 +0200 Subject: gnu: Add r-abundant. * gnu/packages/cran.scm (r-abundant): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3cf1e09df1..7f2123b90e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6185,6 +6185,29 @@ estimation problem.") ;; The CRAN page only says GPL-3. (license license:gpl3+))) +(define-public r-abundant + (package + (name "r-abundant") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "abundant" version)) + (sha256 + (base32 "1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7")))) + (build-system r-build-system) + (propagated-inputs + `(("r-quic" ,r-quic))) + (home-page "https://cran.r-project.org/web/packages/abundant/") + (synopsis "Abundant regression and high-dimensional principal fitted components") + (description + "This package provides tools to fit and predict with the high-dimensional +principal fitted components model. This model is described by Cook, Forzani, +and Rothman (2012) @url{doi:10.1214/11-AOS962}.") + ;; The DESCRIPTION file states GPL-2, but since it directly depends on a + ;; GPLv3+ package (QUIC) this likely means GPLv2+. + (license license:gpl2+))) + (define-public r-ac3net (package (name "r-ac3net") -- cgit 1.4.1 From 03f8011220baf59a0314018c8e564b29c0c2b8b9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:20:50 +0100 Subject: gnu: Add r-ini. * gnu/packages/cran.scm (r-ini): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7f2123b90e..c92b41d140 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6693,3 +6693,24 @@ component analysis and correlation matrices, cluster analyses, scatter plots, stacked scales, effects plots of regression models (including interaction terms) and much more. This package supports labelled data.") (license license:gpl3))) + +(define-public r-ini + (package + (name "r-ini") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ini" version)) + (sha256 + (base32 + "04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv")))) + (build-system r-build-system) + (home-page "https://github.com/dvdscripter/ini") + (synopsis "Read and write configuration files") + (description + "This package provides tools to parse simple @code{.ini} configuration +files to an structured list. Users can manipulate this resulting list with +@code{lapply()} functions. This same structured list can be used to write +back to file after modifications.") + (license license:gpl3))) -- cgit 1.4.1 From 21405e81e7bf4016c4e8ed385186a94e8955bef7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:21:02 +0100 Subject: gnu: Add r-gh. * gnu/packages/cran.scm (r-gh): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c92b41d140..5e9973a071 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6714,3 +6714,25 @@ files to an structured list. Users can manipulate this resulting list with @code{lapply()} functions. This same structured list can be used to write back to file after modifications.") (license license:gpl3))) + +(define-public r-gh + (package + (name "r-gh") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "gh" version)) + (sha256 + (base32 + "1llinfajb0g7006jd2w1hpskxpmkjhnqarcjb71r1qvsccb2ph7k")))) + (build-system r-build-system) + (propagated-inputs + `(("r-httr" ,r-httr) + ("r-ini" ,r-ini) + ("r-jsonlite" ,r-jsonlite))) + (home-page "https://github.com/r-lib/gh#readme") + (synopsis "Access the GitHub API via R") + (description + "This package provides a minimal R client to access the GitHub API.") + (license license:expat))) -- cgit 1.4.1 From d6871153c8217f79cb2fe10a002eaaa9c4340e34 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:21:15 +0100 Subject: gnu: Add r-fs. * gnu/packages/cran.scm (r-fs): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5e9973a071..bc99c3e6df 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6736,3 +6736,26 @@ back to file after modifications.") (description "This package provides a minimal R client to access the GitHub API.") (license license:expat))) + +(define-public r-fs + (package + (name "r-fs") + (version "1.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "fs" version)) + (sha256 + (base32 + "0kqqaqqml8x3r1mdld40iwns0ylj2f52qsdh1vcn39f7w7c2ka8j")))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://fs.r-lib.org") + (synopsis "Cross-platform file system operations based on libuv") + (description + "This package provides a cross-platform interface to file system +operations, built on top of the libuv C library.") + (license license:gpl3))) -- cgit 1.4.1 From 153e5b2ddc2d4ffa8cdfad4f5a3154be0b115551 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:21:26 +0100 Subject: gnu: Add r-clisymbols. * gnu/packages/cran.scm (r-clisymbols): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bc99c3e6df..74e8367a29 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6759,3 +6759,23 @@ back to file after modifications.") "This package provides a cross-platform interface to file system operations, built on top of the libuv C library.") (license license:gpl3))) + +(define-public r-clisymbols + (package + (name "r-clisymbols") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "clisymbols" version)) + (sha256 + (base32 + "1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86")))) + (build-system r-build-system) + (home-page "https://github.com/gaborcsardi/clisymbols") + (synopsis "Unicode symbols at the R prompt") + (description + "This package provides a small subset of Unicode symbols, that are useful +when building command line applications. They fall back to alternatives on +terminals that do not support Unicode.") + (license license:expat))) -- cgit 1.4.1 From efefd3ec42be0125f71066995b94ab8c6a26cde4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:21:37 +0100 Subject: gnu: Add r-usethis. * gnu/packages/cran.scm (r-usethis): New variable. --- gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 74e8367a29..00aa963473 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6779,3 +6779,38 @@ operations, built on top of the libuv C library.") when building command line applications. They fall back to alternatives on terminals that do not support Unicode.") (license license:expat))) + +(define-public r-usethis + (package + (name "r-usethis") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "usethis" version)) + (sha256 + (base32 + "1gadckx3sxz9gxvpkprj9x7zcgg2nz5m4q0vi76ya9li1v03rwwn")))) + (build-system r-build-system) + (propagated-inputs + `(("r-clipr" ,r-clipr) + ("r-clisymbols" ,r-clisymbols) + ("r-crayon" ,r-crayon) + ("r-curl" ,r-curl) + ("r-desc" ,r-desc) + ("r-fs" ,r-fs) + ("r-gh" ,r-gh) + ("r-git2r" ,r-git2r) + ("r-glue" ,r-glue) + ("r-rlang" ,r-rlang) + ("r-rprojroot" ,r-rprojroot) + ("r-rstudioapi" ,r-rstudioapi) + ("r-whisker" ,r-whisker))) + (home-page "https://github.com/r-lib/usethis") + (synopsis "Automate R package and project setup") + (description + "This package helps you to automate R package and project setup tasks +that are otherwise performed manually. This includes setting up unit testing, +test coverage, continuous integration, Git, GitHub integration, licenses, +Rcpp, RStudio projects, and more.") + (license license:gpl3))) -- cgit 1.4.1 From 993426244e19738d435a3c37a38ca60e92b45cf2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:21:45 +0100 Subject: gnu: Add r-sessioninfo. * gnu/packages/cran.scm (r-sessioninfo): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 00aa963473..8b12dd0214 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6814,3 +6814,26 @@ that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, GitHub integration, licenses, Rcpp, RStudio projects, and more.") (license license:gpl3))) + +(define-public r-sessioninfo + (package + (name "r-sessioninfo") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "sessioninfo" version)) + (sha256 + (base32 + "01c0m8yzadpwd825hky6as0f8ka4xyz7zfy0ih2iy7qqw11w6qn5")))) + (build-system r-build-system) + (propagated-inputs + `(("r-cli" ,r-cli) + ("r-withr" ,r-withr))) + (home-page "https://github.com/r-lib/sessioninfo#readme") + (synopsis "R session information") + (description + "This package provides tools to query and print information about the +current R session. It is similar to @code{utils::sessionInfo()}, but includes +more information about packages, and where they were installed from.") + (license license:gpl2))) -- cgit 1.4.1 From cbc8e6dd4aecdc92c823b623b76b365cec9a364d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:21:55 +0100 Subject: gnu: Add r-remotes. * gnu/packages/cran.scm (r-remotes): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8b12dd0214..645a22abf0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6837,3 +6837,24 @@ Rcpp, RStudio projects, and more.") current R session. It is similar to @code{utils::sessionInfo()}, but includes more information about packages, and where they were installed from.") (license license:gpl2))) + +(define-public r-remotes + (package + (name "r-remotes") + (version "2.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "remotes" version)) + (sha256 + (base32 + "1xkzlciv68jyf4j8hads0i47nxbgsy1kv7258c6zzyq66z0amhss")))) + (build-system r-build-system) + (home-page "https://github.com/r-lib/remotes#readme") + (synopsis "R package installation from remote repositories") + (description + "Download and install R packages stored in GitHub, BitBucket, or plain +subversion or git repositories. This package is a lightweight replacement of +the @code{install_*} functions in the @code{devtools} package. Indeed most of +the code was copied over from @code{devtools}.") + (license license:gpl2+))) -- cgit 1.4.1 From 7d8f34707a9fb41b88b5ea0a0cee7068ce9e9cf0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:22:04 +0100 Subject: gnu: Add r-xopen. * gnu/packages/cran.scm (r-xopen): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 645a22abf0..9e4ea6b0a4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6858,3 +6858,24 @@ subversion or git repositories. This package is a lightweight replacement of the @code{install_*} functions in the @code{devtools} package. Indeed most of the code was copied over from @code{devtools}.") (license license:gpl2+))) + +(define-public r-xopen + (package + (name "r-xopen") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "xopen" version)) + (sha256 + (base32 + "1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2")))) + (build-system r-build-system) + (propagated-inputs + `(("r-processx" ,r-processx))) + (home-page "https://github.com/r-lib/xopen#readme") + (synopsis "Open system files, URLs, anything") + (description + "This package provides a cross-platform solution to open files, +directories or URLs with their associated programs.") + (license license:expat))) -- cgit 1.4.1 From 5df4e27fec27d20ab2c17691b2c5ff15ce8fb066 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:22:13 +0100 Subject: gnu: Add r-rcmdcheck. * gnu/packages/cran.scm (r-rcmdcheck): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9e4ea6b0a4..c6fab7554e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6879,3 +6879,34 @@ the code was copied over from @code{devtools}.") "This package provides a cross-platform solution to open files, directories or URLs with their associated programs.") (license license:expat))) + +(define-public r-rcmdcheck + (package + (name "r-rcmdcheck") + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rcmdcheck" version)) + (sha256 + (base32 + "13liz9lmx9xgc0f7pjiz3sp8ygvazx2zslbiwz3p9fimfsx1yfsg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-callr" ,r-callr) + ("r-cli" ,r-cli) + ("r-crayon" ,r-crayon) + ("r-desc" ,r-desc) + ("r-digest" ,r-digest) + ("r-pkgbuild" ,r-pkgbuild) + ("r-prettyunits" ,r-prettyunits) + ("r-r6" ,r-r6) + ("r-rprojroot" ,r-rprojroot) + ("r-withr" ,r-withr) + ("r-xopen" ,r-xopen))) + (home-page "https://github.com/r-Lib/rcmdcheck#readme") + (synopsis "Run R CMD check from R and capture results") + (description + "Run @code{R CMD check} from R programmatically, and capture the results +of the individual checks.") + (license license:expat))) -- cgit 1.4.1 From 9b02d1a11e75044d46e5341b47659d45b1ecb21f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:22:23 +0100 Subject: gnu: Add r-rapportools. * gnu/packages/cran.scm (r-rapportools): New variable. --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c6fab7554e..ab93c833f8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6910,3 +6910,27 @@ directories or URLs with their associated programs.") "Run @code{R CMD check} from R programmatically, and capture the results of the individual checks.") (license license:expat))) + +(define-public r-rapportools + (package + (name "r-rapportools") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rapportools" version)) + (sha256 + (base32 + "1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b")))) + (build-system r-build-system) + (propagated-inputs + `(("r-pander" ,r-pander) + ("r-plyr" ,r-plyr) + ("r-reshape" ,r-reshape))) + (home-page "https://cran.r-project.org/web/packages/rapportools/") + (synopsis "Miscellaneous helper functions with sane defaults for reporting") + (description + "This package provides helper functions that act as wrappers to more +advanced statistical methods with the advantage of having sane defaults for +quick reporting.") + (license license:agpl3+))) -- cgit 1.4.1 From 319a80ce96f49e6750c80529dd5fbdf50594b343 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:22:38 +0100 Subject: gnu: Add r-pander. * gnu/packages/cran.scm (r-pander): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab93c833f8..bed280ba51 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6934,3 +6934,29 @@ of the individual checks.") advanced statistical methods with the advantage of having sane defaults for quick reporting.") (license license:agpl3+))) + +(define-public r-pander + (package + (name "r-pander") + (version "0.6.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "pander" version)) + (sha256 + (base32 + "0gd7rqkpbraznip8jmri9lqa8ajg1sryyplhd6m633wg91whiipi")))) + (build-system r-build-system) + (propagated-inputs + `(("r-digest" ,r-digest) + ("r-rcpp" ,r-rcpp))) + (home-page "https://rapporter.github.io/pander") + (synopsis "Render R objects into Pandoc's markdown") + (description + "The main aim of the pander R package is to provide a minimal and easy +tool for rendering R objects into Pandoc's markdown. The package is also +capable of exporting/converting complex Pandoc documents (reports) in various +ways.") + ;; This package is licensed under either the AGPLv3+ or the very rarely + ;; used OSL 3.0. + (license license:agpl3+))) -- cgit 1.4.1 From 74cc74e43496f7534c6878137d32284df065ec75 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:22:48 +0100 Subject: gnu: Add r-summarytools. * gnu/packages/cran.scm (r-summarytools): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bed280ba51..a41448970a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6960,3 +6960,33 @@ ways.") ;; This package is licensed under either the AGPLv3+ or the very rarely ;; used OSL 3.0. (license license:agpl3+))) + +(define-public r-summarytools + (package + (name "r-summarytools") + (version "0.8.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "summarytools" version)) + (sha256 + (base32 + "0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb")))) + (build-system r-build-system) + (propagated-inputs + `(("r-htmltools" ,r-htmltools) + ("r-lubridate" ,r-lubridate) + ("r-matrixstats" ,r-matrixstats) + ("r-pander" ,r-pander) + ("r-pryr" ,r-pryr) + ("r-rapportools" ,r-rapportools) + ("r-rcurl" ,r-rcurl))) + (home-page "https://github.com/dcomtois/summarytools") + (synopsis "Tools to quickly and neatly summarize data") + (description + "This package provides tools for data frame summaries, cross-tabulations, +weight-enabled frequency tables and common univariate statistics in concise +tables available in a variety of formats (plain ASCII, Markdown and HTML). A +good point-of-entry for exploring data, both for experienced and new R +users.") + (license license:gpl2))) -- cgit 1.4.1 From 7c7ee6cf4c1066ac97386269065d53782b04f7e9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:22:58 +0100 Subject: gnu: Add r-lsei. * gnu/packages/cran.scm (r-lsei): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a41448970a..ba55e72638 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6990,3 +6990,26 @@ tables available in a variety of formats (plain ASCII, Markdown and HTML). A good point-of-entry for exploring data, both for experienced and new R users.") (license license:gpl2))) + +(define-public r-lsei + (package + (name "r-lsei") + (version "1.2-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "lsei" version)) + (sha256 + (base32 + "1xl06fb3is744pxlh42wx5hn1h0ab1k31wnmsmh0524kxzcyp0a7")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://www.stat.auckland.ac.nz/~yongwang") + (synopsis "Solve regression problems under equality/inequality constraints") + (description + "It contains functions that solve least squares linear regression +problems under linear equality/inequality constraints. Functions for solving +quadratic programming problems are also available, which transform such +problems into least squares ones first.") + (license license:gpl2+))) -- cgit 1.4.1 From 2ea75a83690da0963cb72ab859f768c880cc707f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 28 Oct 2018 19:23:04 +0100 Subject: gnu: Add r-npsurv. * gnu/packages/cran.scm (r-npsurv): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ba55e72638..e321993c12 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7013,3 +7013,24 @@ problems under linear equality/inequality constraints. Functions for solving quadratic programming problems are also available, which transform such problems into least squares ones first.") (license license:gpl2+))) + +(define-public r-npsurv + (package + (name "r-npsurv") + (version "0.4-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "npsurv" version)) + (sha256 + (base32 + "1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20")))) + (build-system r-build-system) + (propagated-inputs + `(("r-lsei" ,r-lsei))) + (home-page "https://www.stat.auckland.ac.nz/~yongwang") + (synopsis "Nonparametric survival analysis") + (description + "This package contains functions for non-parametric survival analysis of +exact and interval-censored observations.") + (license license:gpl2+))) -- cgit 1.4.1 From 1c9906c2dd2f4fdc83153b0ee825e304ac9ce1f2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:47:14 +0100 Subject: gnu: r-reprex: Update to 0.2.1. * gnu/packages/cran.scm (r-reprex): Update to 0.2.1. [propagated-inputs]: Add r-fs, remove r-knitr. --- gnu/packages/cran.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e321993c12..2e4b83e48a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -166,19 +166,19 @@ package is a port of the Python package @code{cssselect}.") (define-public r-reprex (package (name "r-reprex") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "reprex" version)) (sha256 (base32 - "1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9")))) + "1ws5gds453xgfili87r35rz1wn2i7jbqissq98csbiddpkgls8sx")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) ("r-clipr" ,r-clipr) - ("r-knitr" ,r-knitr) + ("r-fs" ,r-fs) ("r-rlang" ,r-rlang) ("r-rmarkdown" ,r-rmarkdown) ("r-whisker" ,r-whisker) -- cgit 1.4.1 From b62e104b8411723b1d1ceafb3393c87530d34833 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:47:50 +0100 Subject: gnu: r-ape: Update to 5.2. * gnu/packages/cran.scm (r-ape): Update to 5.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2e4b83e48a..7dd9e117b3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -320,14 +320,14 @@ component analysis (with robust methods, and parallelized functions).") (define-public r-ape (package (name "r-ape") - (version "5.1") + (version "5.2") (source (origin (method url-fetch) (uri (cran-uri "ape" version)) (sha256 (base32 - "0vm2065993wf4hdqarxqykhfz9aaj0rrb98alhkq4qw1d2kdrmdp")))) + "05b4yka5cirdgxd4d7iiaqvr428pk3j6n9q6dvg5j38kdj2h5sr7")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) -- cgit 1.4.1 From 7e127ab1286cfa27879280bb2c17a6c609a46fa7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:48:01 +0100 Subject: gnu: r-ps: Update to 1.2.0. * gnu/packages/cran.scm (r-ps): Update to 1.2.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7dd9e117b3..3888d26695 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -492,13 +492,13 @@ print, summary, plot, update, etc. (define-public r-ps (package (name "r-ps") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "ps" version)) (sha256 - (base32 "1zm9qkyvy1fvcjvmgw51iqw8x1xzkpy7rx7xnchwfj0xpzal0ljx")))) + (base32 "0ai8igdkysmks1ihbp3h3s552da2hskxqwrvp4cx7vwn91x9f3wd")))) (build-system r-build-system) (home-page "http://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") -- cgit 1.4.1 From 2657e666cb7df7a1409d978221206b648981e1ca Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:48:14 +0100 Subject: gnu: r-pkgbuild: Update to 1.0.2. * gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2. [propagated-inputs]: Add r-cli and r-prettyunits. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3888d26695..3c8a63d8aa 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -510,19 +510,21 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.0.0") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 (base32 - "10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9")))) + "1i1rrax7x7r2bplig5cfc50lx85jc4n9a3qmvbdviaj22wr2lghs")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) + ("r-cli" ,r-cli) ("r-crayon" ,r-crayon) ("r-desc" ,r-desc) + ("r-prettyunits" ,r-prettyunits) ("r-r6" ,r-r6) ("r-rprojroot" ,r-rprojroot) ("r-withr" ,r-withr))) -- cgit 1.4.1 From 0ab28e54508fdd4399a580680c843cd8304461ae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:48:40 +0100 Subject: gnu: r-pkgload: Update to 1.0.1. * gnu/packages/cran.scm (r-pkgload): Update to 1.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3c8a63d8aa..d4283d242b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -539,14 +539,14 @@ is configured appropriately so R can use them.") (define-public r-pkgload (package (name "r-pkgload") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "pkgload" version)) (sha256 (base32 - "1rjj229nq9fsl4ki4m75ybsavjgpqqhsr1zjzapwicsrxv6212px")))) + "0mm0avvan528zbrcrxigl5fkd7za01fb0qhlqrqvm3ar0115cqa8")))) (build-system r-build-system) (propagated-inputs `(("r-desc" ,r-desc) -- cgit 1.4.1 From 674c8185608f926837af63fc17fca4f77d7686ee Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:48:50 +0100 Subject: gnu: r-rcpp: Update to 0.12.19. * gnu/packages/cran.scm (r-rcpp): Update to 0.12.19. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d4283d242b..c206c92f09 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -566,13 +566,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "0.12.18") + (version "0.12.19") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "006kpg2ph109rh1l13lqk26pp4as4fvl5661vrcczjygacgd1v7w")))) + (base32 "10mmiaawv9iwglc6z4y51mdpsfb1sivqmwr6xnfqkllcnpabdbk3")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") -- cgit 1.4.1 From ecdfca05c8b375412939e3c84f755cc2bfde10cd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:49:07 +0100 Subject: gnu: r-ffbase: Update to 0.12.5. * gnu/packages/cran.scm (r-ffbase): Update to 0.12.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c206c92f09..ea50b545ed 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -891,14 +891,14 @@ in main memory.") (define-public r-ffbase (package (name "r-ffbase") - (version "0.12.3") + (version "0.12.5") (source (origin (method url-fetch) (uri (cran-uri "ffbase" version)) (sha256 (base32 - "1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5")))) + "1h5x6rbb1nrpzf4ywkizn8ij0bz3mlz46byh46ylxhicg1ribi24")))) (build-system r-build-system) (propagated-inputs `(("r-bit" ,r-bit) -- cgit 1.4.1 From 2b8126a4ecf0a4c0a512bf1f51579f40cdf1ab1c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:49:23 +0100 Subject: gnu: r-reshape: Update to 0.8.8. * gnu/packages/cran.scm (r-reshape): Update to 0.8.8. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ea50b545ed..a51ca351ed 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -936,14 +936,14 @@ quantities.") (define-public r-reshape (package (name "r-reshape") - (version "0.8.7") + (version "0.8.8") (source (origin (method url-fetch) (uri (cran-uri "reshape" version)) (sha256 (base32 - "14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig")))) + "0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad")))) (build-system r-build-system) (propagated-inputs `(("r-plyr" ,r-plyr) -- cgit 1.4.1 From 9e82d6080eb8db02b3e39004a590f2ac49b68c70 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:49:37 +0100 Subject: gnu: r-cli: Update to 1.0.1. * gnu/packages/cran.scm (r-cli): Update to 1.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a51ca351ed..6d540d3550 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2550,14 +2550,14 @@ plots in @code{ggplot2}.") (define-public r-cli (package (name "r-cli") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg")))) + "1r2yih4c0bdmbx0qrarlf0m1p5z30sri755zmdazsq2pw76zp07g")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) -- cgit 1.4.1 From 16a39c2d5683a38723a49b2d17b77290420fb72d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:49:52 +0100 Subject: gnu: r-ggridges: Update to 0.5.1. * gnu/packages/cran.scm (r-ggridges): Update to 0.5.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6d540d3550..06cdd3c06f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2503,14 +2503,14 @@ plotting. a three dimensional point cloud.") (define-public r-ggridges (package (name "r-ggridges") - (version "0.5.0") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "ggridges" version)) (sha256 (base32 - "1znvsbl3px8dddpjgdrygnpz4s685wizi0jnjvx2hrz58i0chjqj")))) + "0dhwcpy785ac2ny5bjp284595nnybi3554wd0yffsli0vzf7ry01")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) -- cgit 1.4.1 From 870faab4b73aa61ad731da8185a105adb1122a9a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:50:06 +0100 Subject: gnu: r-xts: Update to 0.11-1. * gnu/packages/cran.scm (r-xts): Update to 0.11-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 06cdd3c06f..0f03c52704 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2318,14 +2318,14 @@ training models for classification or ranking.") (define-public r-xts (package (name "r-xts") - (version "0.11-0") + (version "0.11-1") (source (origin (method url-fetch) (uri (cran-uri "xts" version)) (sha256 (base32 - "1v50yn4bsjzdyk7r90isn6dxmpkapillrhpx3gqsshd180vwzqk9")))) + "17d3g14xkxa1a5z5gd3gk1xjqfkjg1ik3i12q0arina8frql3jhd")))) (build-system r-build-system) (propagated-inputs `(("r-zoo" ,r-zoo))) (home-page "https://github.com/joshuaulrich/xts") -- cgit 1.4.1 From 5621b8403b9eafe2e25a48c7567c5e119b50a969 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:50:18 +0100 Subject: gnu: r-sm: Update to 2.2-5.6. * gnu/packages/cran.scm (r-sm): Update to 2.2-5.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0f03c52704..2f434a87e6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2228,14 +2228,14 @@ acceptance regions, log-ratio plots and Q-Q plots.") (define-public r-sm (package (name "r-sm") - (version "2.2-5.5") + (version "2.2-5.6") (source (origin (method url-fetch) (uri (cran-uri "sm" version)) (sha256 (base32 - "1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3")))) + "0c4whcx879gb4lwvqnzxl5n9xgpcqh2c54ip9ami3mwfprzcv45q")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "http://www.stats.gla.ac.uk/~adrian/sm/") -- cgit 1.4.1 From bba80fadbe4f94a219d86d314a0de5b3c473d36c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:50:31 +0100 Subject: gnu: r-magic: Update to 1.5-9. * gnu/packages/cran.scm (r-magic): Update to 1.5-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2f434a87e6..556c21ad7e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1628,14 +1628,14 @@ calendar objects.") (define-public r-magic (package (name "r-magic") - (version "1.5-8") + (version "1.5-9") (source (origin (method url-fetch) (uri (cran-uri "magic" version)) (sha256 (base32 - "083cgpp3v03li0h8597b3g21pd9lkbmn9pyssblnhc800mpc52vz")))) + "0snmdh6vk0p6ar1swsihisinxrx7l8371dri5lk0z24ysgr5w7gs")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind))) -- cgit 1.4.1 From 8c456dff26492b88ab6477a00c3ec5fcda323f29 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:50:43 +0100 Subject: gnu: r-fitdistrplus: Update to 1.0-11. * gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11. [propagated-inputs]: Add r-npsurv. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 556c21ad7e..070ec8aff2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1350,17 +1350,18 @@ functions from LINPACK.") (define-public r-fitdistrplus (package (name "r-fitdistrplus") - (version "1.0-9") + (version "1.0-11") (source (origin (method url-fetch) (uri (cran-uri "fitdistrplus" version)) (sha256 (base32 - "18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6")))) + "12hckg3y5j3zh9q1gwxkc27q813p2r42iqp7wdfiq6nj55jrh6w6")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) + ("r-npsurv" ,r-npsurv) ("r-survival" ,r-survival))) (home-page "http://riskassessment.r-forge.r-project.org") (synopsis "Fitting a parametric distribution from data") -- cgit 1.4.1 From a8de3090d8c1ba6d5a4fecaf1799402fc7faf3ae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:51:09 +0100 Subject: gnu: r-xfun: Update to 0.4. * gnu/packages/cran.scm (r-xfun): Update to 0.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 070ec8aff2..efac6110cc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2766,14 +2766,14 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.3") + (version "0.4") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 (base32 - "1r11dd49ngmjgbjdv28a9c1jp8cg1l50x0acbsamzz576p8i2wl9")))) + "0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") -- cgit 1.4.1 From dda4ce560f50f9cf35d955641d53a485224a4e65 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:51:21 +0100 Subject: gnu: r-tinytex: Update to 0.9. * gnu/packages/cran.scm (r-tinytex): Update to 0.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index efac6110cc..da5d0694e1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2850,14 +2850,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.8") + (version "0.9") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "1bgpr5i5399jf9n6pg2mm4aamisbhppg082ad0wv1j4g0rlxf1gy")))) + "08w5hyq3ysh631d5whgcfv1bb007cdc0bjhb83vwmhazs6rgvyjy")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) -- cgit 1.4.1 From 534bf85b9d71be43b005a8c73e1b313cbb4f1a66 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:51:32 +0100 Subject: gnu: r-ttr: Update to 0.23-4. * gnu/packages/cran.scm (r-ttr): Update to 0.23-4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index da5d0694e1..34e0e1275b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2965,14 +2965,14 @@ generation, and 2D/3D network visualization.") (define-public r-ttr (package (name "r-ttr") - (version "0.23-3") + (version "0.23-4") (source (origin (method url-fetch) (uri (cran-uri "TTR" version)) (sha256 (base32 - "07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1")))) + "18mzyv6cmxmqyqsfwlx2b2k055887mfgc2jgj8xkn8c6m56n05zb")))) (properties `((upstream-name . "TTR"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From 905734fd7c8984d910e6c5f35b682517f8d620e2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:51:47 +0100 Subject: gnu: r-extradistr: Update to 1.8.10. * gnu/packages/cran.scm (r-extradistr): Update to 1.8.10. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 34e0e1275b..abfe29f0ee 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3173,14 +3173,14 @@ Cryer and Kung-Sik Chan.") (define-public r-extradistr (package (name "r-extradistr") - (version "1.8.9") + (version "1.8.10") (source (origin (method url-fetch) (uri (cran-uri "extraDistr" version)) (sha256 (base32 - "1fg8vjpal33y51iqzglk1yvy46d7js0l0wfbdy698lq8a06hq19p")))) + "00lvqp5bb3iak5myiz4rqm887bkq9sdh7aybmz84mmfni6q01m28")))) (properties `((upstream-name . "extraDistr"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From 484e81f73a781547953f092263ffc1955d6115fb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:52:01 +0100 Subject: gnu: r-cubature: Update to 1.4-1. * gnu/packages/cran.scm (r-cubature): Update to 1.4-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index abfe29f0ee..c50241b5d2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3243,14 +3243,14 @@ applied econometric analysis.") (define-public r-cubature (package (name "r-cubature") - (version "1.4") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "cubature" version)) (sha256 (base32 - "1hd23b8v2kpqp5gr0va8p2q7j8w9rik6ks7zrr4b8mb2mwrakk74")))) + "10jl5l3xnigiq95829ssq69xbim97k851187dghc30awszcx4clh")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) -- cgit 1.4.1 From 44de41b572c6d8011d4f643824977c3a9219644c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:52:13 +0100 Subject: gnu: r-expm: Update to 0.999-3. * gnu/packages/cran.scm (r-expm): Update to 0.999-3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c50241b5d2..0aa0aedcb6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3299,14 +3299,14 @@ sample Robust Rank-Order Distributional Test.") (define-public r-expm (package (name "r-expm") - (version "0.999-2") + (version "0.999-3") (source (origin (method url-fetch) (uri (cran-uri "expm" version)) (sha256 (base32 - "1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q")))) + "04k4a6g071jkjc0d30ncmf713dj16brcs9m6pj43hnycc1caq6si")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) (native-inputs `(("gfortran" ,gfortran))) -- cgit 1.4.1 From 02c57c018a617abd3fcfd83a1a29074048b25dc7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:52:25 +0100 Subject: gnu: r-np: Update to 0.60-9. * gnu/packages/cran.scm (r-np): Update to 0.60-9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0aa0aedcb6..19c73239fc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3364,14 +3364,14 @@ creation and manipulation of WAVE audio files.") (define-public r-np (package (name "r-np") - (version "0.60-8") + (version "0.60-9") (source (origin (method url-fetch) (uri (cran-uri "np" version)) (sha256 (base32 - "17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j")))) + "1z4jcpx8bbgwslv42wrphfd1qfq965qjn0kmfxm5f6hbbycahcgy")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) -- cgit 1.4.1 From fda8dd58c2ceb32e96e1ed02630d7edb162a4914 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:52:38 +0100 Subject: gnu: r-shinyace: Update to 0.3.2. * gnu/packages/cran.scm (r-shinyace): Update to 0.3.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 19c73239fc..8cbf6395df 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3503,14 +3503,14 @@ files.") (define-public r-shinyace (package (name "r-shinyace") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "shinyAce" version)) (sha256 (base32 - "1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb")))) + "1fbk5i6w6cpam8s3acf4bgdp8hajn4digjjix3i6i4q3p2rvn6zx")))) (properties `((upstream-name . "shinyAce"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From 80234d3294338646b0ca761b7abae0958eae15ef Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:52:51 +0100 Subject: gnu: r-maptools: Update to 0.9-4. * gnu/packages/cran.scm (r-maptools): Update to 0.9-4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8cbf6395df..acdae84f2d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4062,14 +4062,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "0.9-3") + (version "0.9-4") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "0hxbv01im9zk1qrwgigpc510w6x0kzdzip4gx2jzfqmmwr8m17r8")))) + "1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k")))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) -- cgit 1.4.1 From 7608984fe9a0e5d8ade27341ecd7d38171f39816 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:53:03 +0100 Subject: gnu: r-later: Update to 0.7.5. * gnu/packages/cran.scm (r-later): Update to 0.7.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index acdae84f2d..2bfe810558 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4090,14 +4090,14 @@ exchanging spatial objects with other R packages.") (define-public r-later (package (name "r-later") - (version "0.7.4") + (version "0.7.5") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "125zc499gj702x2bch95lsfzk2qb4dzv3604x9afym2i3ylrmm64")))) + "0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) -- cgit 1.4.1 From 08645fcff55bb1b6cc9afa684deb77ec4c53945d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:53:19 +0100 Subject: gnu: r-fansi: Update to 0.4.0. * gnu/packages/cran.scm (r-fansi): Update to 0.4.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2bfe810558..2aef7c1a52 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4539,14 +4539,14 @@ steps and provides ggplot2-based elegant data visualization.") (define-public r-fansi (package (name "r-fansi") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "135qj7bcc3mwn0vg55hiiadf66lx6zaxvkicfmfw9x0zr7ah2r6x")))) + "02f2rx7v7wz6w97m2slwky2i5y8f9iafycmkyr3siy3z3k8fj171")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes -- cgit 1.4.1 From 081af9fae79954e7e0b927d1af667cb1bf36bb60 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:53:31 +0100 Subject: gnu: r-hdf5r: Update to 1.0.1. * gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2aef7c1a52..e30a2b3e97 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4581,14 +4581,14 @@ results to the user.") (define-public r-hdf5r (package (name "r-hdf5r") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "hdf5r" version)) (sha256 (base32 - "1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva")))) + "0h222q80li8rs3cv4c5lvv3g91ygd51w43ay6fwyk9q9d315vwrj")))) (build-system r-build-system) (inputs `(("hdf5" ,hdf5) -- cgit 1.4.1 From 71d995392b3b8c717df739a8b7d9fd73c4b17f70 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:53:47 +0100 Subject: gnu: r-rdpack: Update to 0.10-1. * gnu/packages/cran.scm (r-rdpack): Update to 0.10-1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e30a2b3e97..d341ad1ef7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4671,14 +4671,14 @@ functions.") (define-public r-rdpack (package (name "r-rdpack") - (version "0.9-0") + (version "0.10-1") (source (origin (method url-fetch) (uri (cran-uri "Rdpack" version)) (sha256 (base32 - "067w0w6kza0hkzcnx58danl83yfvl9yjacr47mnid2bg856gdd1b")))) + "0bbjnw88h54v40hzim00i8yd3p4rk9i84zfdmgcbnylscwvsf0av")))) (properties `((upstream-name . "Rdpack"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From 464676a970e4cc0a7e1b3019ecf0c6ed05324ed8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:53:59 +0100 Subject: gnu: r-proc: Update to 1.13.0. * gnu/packages/cran.scm (r-proc): Update to 1.13.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d341ad1ef7..300d67c02d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5222,14 +5222,14 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.12.1") + (version "1.13.0") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "05ad69a6fxy9k903cw3h4q59ch2jv6qfg9yjdbw3cgiiazcafrlj")))) + "0ain17clympkx09ym7gydylcd93096dxzqx1qzci310yq2l7fknm")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From bec74196ea05ee84eb4a53b8285fef6628ccfdff Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:54:10 +0100 Subject: gnu: r-abps: Update to 0.3. * gnu/packages/cran.scm (r-abps): Update to 0.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 300d67c02d..d59a16b6eb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5860,13 +5860,13 @@ detection.") (define-public r-abps (package (name "r-abps") - (version "0.2") + (version "0.3") (source (origin (method url-fetch) (uri (cran-uri "ABPS" version)) (sha256 - (base32 "1k3f5i34f4w2khkszb4qhwwcpiy7gsfh82vjr6rypwg6rx5rjclq")))) + (base32 "0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll")))) (properties `((upstream-name . "ABPS"))) (build-system r-build-system) (propagated-inputs `(("r-kernlab" ,r-kernlab))) -- cgit 1.4.1 From 31c8d9fe009fdcc38675dfb6d8b109a7c755225a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:54:23 +0100 Subject: gnu: r-emmeans: Update to 1.3.0. * gnu/packages/cran.scm (r-emmeans): Update to 1.3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d59a16b6eb..8034525986 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6404,14 +6404,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.2.4") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "01g6albv9whpdsj4j7c3q02pwdlkscjl5d2l8z96qafw7n9gml6g")))) + "0kdyy4qp332c4yyvp1cnh48h6ks6ffir5rjcv0py0vm3m8c3hh61")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) -- cgit 1.4.1 From d42f74103543dad9ec68113363859663b19fdbfa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:54:56 +0100 Subject: gnu: r-dendextend: Update to 1.9.0. * gnu/packages/cran.scm (r-dendextend): Update to 1.9.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8034525986..636a8c2643 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -792,14 +792,14 @@ rows, dropping names) to see if the modified versions are identical.") (define-public r-dendextend (package (name "r-dendextend") - (version "1.8.0") + (version "1.9.0") (source (origin (method url-fetch) (uri (cran-uri "dendextend" version)) (sha256 (base32 - "1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh")))) + "1jiani6zwfajky2vafvay2hq158nh99rdrk3j00lycspds9v35fd")))) (build-system r-build-system) (propagated-inputs `(("r-fpc" ,r-fpc) -- cgit 1.4.1 From 8871a513503462cd25c5b617286710164f96dce2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 07:55:11 +0100 Subject: gnu: r-webshot: Update to 0.5.1. * gnu/packages/cran.scm (r-webshot): Update to 0.5.1. [propagated-inputs]: Add r-callr; remove r-processx and r-withr. --- gnu/packages/cran.scm | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 636a8c2643..ded667e515 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2706,20 +2706,19 @@ of merit, ordering functions, and enhanced versions of @code{pairs} and (define-public r-webshot (package (name "r-webshot") - (version "0.5.0") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "webshot" version)) (sha256 (base32 - "07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh")))) + "08sb1xi376pfy1vwilk2d68zljsg9yiv04n2dkqz383gdhh0sxdr")))) (build-system r-build-system) (propagated-inputs - `(("r-jsonlite" ,r-jsonlite) - ("r-magrittr" ,r-magrittr) - ("r-processx" ,r-processx) - ("r-withr" ,r-withr))) + `(("r-callr" ,r-callr) + ("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr))) (home-page "https://github.com/wch/webshot/") (synopsis "Take screenshots of web pages") (description -- cgit 1.4.1 From e5f9e9fa795a1024c34539e3cbecc4a4cb4fa1ae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 08:36:33 +0100 Subject: gnu: r-radiant-data: Update to 0.9.7. * gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7. [propagated-inputs]: Add r-shinyfiles and r-summarytools. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ded667e515..b41365a08d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3525,14 +3525,14 @@ environment within Shiny.") (define-public r-radiant-data (package (name "r-radiant-data") - (version "0.9.5") + (version "0.9.7") (source (origin (method url-fetch) (uri (cran-uri "radiant.data" version)) (sha256 (base32 - "0mbxfqn79nphii4hb6kxl2wc0w0ra16y378rp2yw9a9926zdb7mb")) + "1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk")) (modules '((guix build utils))) (snippet '(begin @@ -3566,7 +3566,9 @@ environment within Shiny.") ("r-rstudioapi" ,r-rstudioapi) ("r-scales" ,r-scales) ("r-shiny" ,r-shiny) + ("r-shinyfiles" ,r-shinyfiles) ("r-shinyace" ,r-shinyace) + ("r-summarytools" ,r-summarytools) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-writexl" ,r-writexl))) -- cgit 1.4.1 From 7a06cdfa8c101f431227c4c5c86877939022fb1a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 20:21:43 +0100 Subject: gnu: r-analytics: Update to 3.0. * gnu/packages/cran.scm (r-analytics): Update to 3.0. [propagated-inputs]: Add r-vim. --- gnu/packages/cran.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b41365a08d..ca1c1c85f8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4240,14 +4240,14 @@ quizzes to create self-paced tutorials for learning about R and R packages.") (define-public r-analytics (package (name "r-analytics") - (version "2.0") + (version "3.0") (source (origin (method url-fetch) (uri (cran-uri "analytics" version)) (sha256 (base32 - "1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6")))) + "0js3c8lwj3knccb55nq03cbjlf4w390p9aid2mi5x80l3ayd9in1")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) @@ -4260,7 +4260,8 @@ quizzes to create self-paced tutorials for learning about R and R packages.") ("r-robust" ,r-robust) ("r-trend" ,r-trend) ("r-tsa" ,r-tsa) - ("r-urca" ,r-urca))) + ("r-urca" ,r-urca) + ("r-vim" ,r-vim))) (home-page "https://cran.r-project.org/web/packages/analytics/") (synopsis "Collection of data analysis tools") (description -- cgit 1.4.1 From 32499b26e6065d67e71d8b998cbfffa6dd60b274 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:13:01 +0100 Subject: gnu: Add r-clusteval. * gnu/packages/cran.scm (r-clusteval): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ca1c1c85f8..5361f964d4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7039,3 +7039,25 @@ problems into least squares ones first.") "This package contains functions for non-parametric survival analysis of exact and interval-censored observations.") (license license:gpl2+))) + +(define-public r-clusteval + (package + (name "r-clusteval") + (version "0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "clusteval" version)) + (sha256 + (base32 + "1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mvtnorm" ,r-mvtnorm) + ("r-rcpp" ,r-rcpp))) + (home-page "https://cran.r-project.org/web/packages/clusteval/") + (synopsis "Evaluation of clustering algorithms") + (description + "This R package provides a suite of tools to evaluate clustering +algorithms, clusterings, and individual clusters.") + (license license:expat))) -- cgit 1.4.1 From 373cef0a0c2be5e7496f7764447417398abe02ff Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:46:47 +0100 Subject: gnu: Add r-tweedie. * gnu/packages/cran.scm (r-tweedie): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5361f964d4..f5ce5bc10f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7061,3 +7061,25 @@ exact and interval-censored observations.") "This R package provides a suite of tools to evaluate clustering algorithms, clusterings, and individual clusters.") (license license:expat))) + +(define-public r-tweedie + (package + (name "r-tweedie") + (version "2.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "tweedie" version)) + (sha256 + (base32 + "10fv998qjxsyx0h94fi0xbh6xbf24nwgh254n9zfnmix9vk2cqls")))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/tweedie/") + (synopsis "Evaluation of Tweedie exponential family models") + (description + "Maximum likelihood computations for Tweedie families, including the +series expansion (Dunn and Smyth, 2005; ) and +the Fourier inversion (Dunn and Smyth, 2008; ), +and related methods.") + (license license:gpl2+))) -- cgit 1.4.1 From 4fb35ebd8d1845dbabbbbb04b4ae332513e6e6c5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:47:00 +0100 Subject: gnu: Add r-rcppgsl. * gnu/packages/cran.scm (r-rcppgsl): New variable. --- gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f5ce5bc10f..552df6dd3f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7083,3 +7083,33 @@ series expansion (Dunn and Smyth, 2005; ) and the Fourier inversion (Dunn and Smyth, 2008; ), and related methods.") (license license:gpl2+))) + +(define-public r-rcppgsl + (package + (name "r-rcppgsl") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "RcppGSL" version)) + (sha256 + (base32 + "16pdapq31729db53agnb48jkvdm97167n3bigy5zazc3q3isis1m")))) + (properties `((upstream-name . "RcppGSL"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp) + ("gsl" ,gsl))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes + (home-page "https://cran.r-project.org/web/packages/RcppGSL/") + (synopsis "Rcpp integration for GSL vectors and matrices") + (description + "The GNU Scientific Library (or GSL) is a collection of numerical +routines for scientific computing. It is particularly useful for C and C++ +programs as it provides a standard C interface to a wide range of mathematical +routines. There are over 1000 functions in total with an extensive test +suite. The RcppGSL package provides an easy-to-use interface between GSL data +structures and R using concepts from Rcpp which is itself a package that eases +the interfaces between R and C++.") + (license license:gpl2+))) -- cgit 1.4.1 From 20ff6e3a34eb49afef134ce6cae23d9c5935c6f5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:47:10 +0100 Subject: gnu: Add r-mvabund. * gnu/packages/cran.scm (r-mvabund): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 552df6dd3f..b696219cb9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7113,3 +7113,28 @@ suite. The RcppGSL package provides an easy-to-use interface between GSL data structures and R using concepts from Rcpp which is itself a package that eases the interfaces between R and C++.") (license license:gpl2+))) + +(define-public r-mvabund + (package + (name "r-mvabund") + (version "3.13.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "mvabund" version)) + (sha256 + (base32 + "1z8bj9zbc8h7w1xki9sc2p2rq6lv8gbcmiy9819z54d7lx1i9cnj")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-rcpp" ,r-rcpp) + ("r-rcppgsl" ,r-rcppgsl) + ("r-statmod" ,r-statmod) + ("r-tweedie" ,r-tweedie))) + (home-page "https://cran.r-project.org/web/packages/mvabund/") + (synopsis "Statistical methods for analysing multivariate abundance data") + (description + "This package provides a set of tools for displaying, modeling and +analysing multivariate abundance data in community ecology.") + (license license:lgpl2.1+))) -- cgit 1.4.1 From 49863fd695fc05eb85be7c7dfc950d4936436dc3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:47:18 +0100 Subject: gnu: Add r-afex. * gnu/packages/cran.scm (r-afex): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b696219cb9..09cf64a5d0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7138,3 +7138,28 @@ the interfaces between R and C++.") "This package provides a set of tools for displaying, modeling and analysing multivariate abundance data in community ecology.") (license license:lgpl2.1+))) + +(define-public r-afex + (package + (name "r-afex") + (version "0.22-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "afex" version)) + (sha256 + (base32 + "065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n")))) + (build-system r-build-system) + (propagated-inputs + `(("r-car" ,r-car) + ("r-lme4" ,r-lme4) + ("r-lmertest" ,r-lmertest) + ("r-pbkrtest" ,r-pbkrtest) + ("r-reshape2" ,r-reshape2))) + (home-page "https://afex.singmann.science/") + (synopsis "Analysis of factorial experiments") + (description + "This package provides convenience functions for analyzing factorial +experiments using ANOVA or mixed models.") + (license license:gpl2+))) -- cgit 1.4.1 From 7c02dd6268c70d86b4c63c38ddfb034463874cc0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:47:26 +0100 Subject: gnu: Add r-lmertest. * gnu/packages/cran.scm (r-lmertest): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 09cf64a5d0..9b465692e2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7163,3 +7163,32 @@ analysing multivariate abundance data in community ecology.") "This package provides convenience functions for analyzing factorial experiments using ANOVA or mixed models.") (license license:gpl2+))) + +(define-public r-lmertest + (package + (name "r-lmertest") + (version "3.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "lmerTest" version)) + (sha256 + (base32 + "0pia69sc8bn37mkiprdf91iilziqb865f94k6x6c26i33fg7rq4m")))) + (properties `((upstream-name . "lmerTest"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-lme4" ,r-lme4) + ("r-mass" ,r-mass) + ("r-numderiv" ,r-numderiv))) + (home-page "https://github.com/runehaubo/lmerTestR") + (synopsis "Tests in linear mixed effects models") + (description + "This package provides p-values in type I, II or III anova and summary +tables for @code{lmer} model fits via Satterthwaite's degrees of freedom +method. A Kenward-Roger method is also available via the @code{pbkrtest} +package. Model selection methods include step, drop1 and anova-like tables +for random effects (ranova). Methods for Least-Square means (LS-means) and +tests of linear contrasts of fixed effects are also available.") + (license license:gpl2+))) -- cgit 1.4.1 From fd649d1e68ac8123d6e6e66fcf8905e6c6ede5b7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 30 Oct 2018 22:47:35 +0100 Subject: gnu: Add r-r2glmm. * gnu/packages/cran.scm (r-r2glmm): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9b465692e2..df869794db 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7192,3 +7192,36 @@ package. Model selection methods include step, drop1 and anova-like tables for random effects (ranova). Methods for Least-Square means (LS-means) and tests of linear contrasts of fixed effects are also available.") (license license:gpl2+))) + +(define-public r-r2glmm + (package + (name "r-r2glmm") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "r2glmm" version)) + (sha256 + (base32 + "0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy")))) + (build-system r-build-system) + (propagated-inputs + `(("r-afex" ,r-afex) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-lmertest" ,r-lmertest) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-mgcv" ,r-mgcv) + ("r-pbkrtest" ,r-pbkrtest))) + (home-page "https://github.com/bcjaeger/r2glmm") + (synopsis "Compute R squared for mixed (multilevel) models") + (description + "This package computes model and semi partial R squared with confidence +limits for the linear and generalized linear mixed model (LMM and GLMM). The +R squared measure from L. J. Edwards et al. (2008) is extended to the GLMM +using @dfn{penalized quasi-likelihood} (PQL) estimation (see Jaeger et +al. (2016)).") + (license license:gpl2))) -- cgit 1.4.1 From cddc0300b7fb5fbbc80f45a626073f8372bf491f Mon Sep 17 00:00:00 2001 From: lakshmi Date: Tue, 6 Nov 2018 15:59:01 +0100 Subject: gnu: Add r-weights. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/cran.scm (r-weights): New variable. Signed-off-by: Gábor Boskovits --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index df869794db..8fed911360 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7225,3 +7225,31 @@ R squared measure from L. J. Edwards et al. (2008) is extended to the GLMM using @dfn{penalized quasi-likelihood} (PQL) estimation (see Jaeger et al. (2016)).") (license license:gpl2))) + +(define-public r-weights + (package + (name "r-weights") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "weights" version)) + (sha256 + (base32 + "0186bfpkhxngrshac6bpg37alp6slwhwd43inrm8hqg0vhpfgc4c")))) + (build-system r-build-system) + (propagated-inputs + `(("r-gdata" ,r-gdata) + ("r-hmisc" ,r-hmisc) + ("r-mice" ,r-mice))) + (home-page + "https://cran.r-project.org/web/packages/weights/") + (synopsis "Weighting and weighted statistics") + (description "This package Provides a variety of functions for producing +simple weighted statistics, such as weighted Pearson's correlations, partial +correlations, Chi-Squared statistics, histograms, and t-tests. Also now +includes some software for quickly recoding survey data and plotting point +estimates from interaction terms in regressions (and multiply imputed +regressions). NOTE: Weighted partial correlation calculations pulled to +address a bug.") + (license license:gpl2+))) -- cgit 1.4.1 From bfa5662e38de7bd02c493e52796c05359a984c66 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:27:16 +0100 Subject: gnu: Add r-rcppannoy. * gnu/packages/cran.scm (r-rcppannoy): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8fed911360..43ff292cb2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7253,3 +7253,30 @@ estimates from interaction terms in regressions (and multiply imputed regressions). NOTE: Weighted partial correlation calculations pulled to address a bug.") (license license:gpl2+))) + +(define-public r-rcppannoy + (package + (name "r-rcppannoy") + (version "0.0.11") + (source + (origin + (method url-fetch) + (uri (cran-uri "RcppAnnoy" version)) + (sha256 + (base32 + "1ik50ancfgcvh03n4jsqwjk8lf056rbgd70q4l4didmvh5kcyjd1")))) + (properties `((upstream-name . "RcppAnnoy"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes + (home-page "https://cran.r-project.org/web/packages/RcppAnnoy/") + (synopsis "Rcpp bindings for Annoy, a library for Approximate Nearest Neighbors") + (description + "Annoy is a small C++ library for Approximate Nearest Neighbors written +for efficient memory usage as well an ability to load from and save to disk. +This package provides an R interface.") + ;; Annoy is released under ASL 2.0, but this wrapper is released under + ;; GPLv2+. + (license (list license:gpl2+ license:asl2.0)))) -- cgit 1.4.1 From b58940cb0345705a9681f2c47d668f252d00a699 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:27:41 +0100 Subject: gnu: Add r-ncdf4. * gnu/packages/cran.scm (r-ncdf4): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 43ff292cb2..11f7717bd8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7280,3 +7280,30 @@ This package provides an R interface.") ;; Annoy is released under ASL 2.0, but this wrapper is released under ;; GPLv2+. (license (list license:gpl2+ license:asl2.0)))) + +(define-public r-ncdf4 + (package + (name "r-ncdf4") + (version "1.16") + (source + (origin + (method url-fetch) + (uri (cran-uri "ncdf4" version)) + (sha256 + (base32 + "0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd")))) + (build-system r-build-system) + (inputs + `(("netcdf" ,netcdf) + ("zlib" ,zlib))) + (home-page "https://cran.r-project.org/web/packages/ncdf4/index.html") + (synopsis "R interface to Unidata netCDF format data files") + (description + "This package provides a high-level R interface to data files written +using Unidata's netCDF library (version 4 or earlier), which are binary data +files that are portable across platforms and include metadata information in +addition to the data sets. Using this package, netCDF files can be opened and +data sets read in easily. It is also easy to create new netCDF dimensions, +variables, and files, in either version 3 or 4 format, and manipulate existing +netCDF files.") + (license license:gpl3+))) -- cgit 1.4.1 From 1e605c030feaab4d3c24075f5c5b3783454973f8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:28:09 +0100 Subject: gnu: Add r-biocmanager. * gnu/packages/cran.scm (r-biocmanager): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 11f7717bd8..ffad46be01 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7307,3 +7307,23 @@ data sets read in easily. It is also easy to create new netCDF dimensions, variables, and files, in either version 3 or 4 format, and manipulate existing netCDF files.") (license license:gpl3+))) + +(define-public r-biocmanager + (package + (name "r-biocmanager") + (version "1.30.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "BiocManager" version)) + (sha256 + (base32 + "0mfvx1xzsgiag9p42kdyqg8fvajyakrdy3z2smhdlaawzbi0qmax")))) + (properties `((upstream-name . "BiocManager"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/BiocManager/") + (synopsis "Access the Bioconductor project package repository") + (description + "This package provides a convenient tool to install and update +Bioconductor packages.") + (license license:artistic2.0))) -- cgit 1.4.1 From 0dd84df1210250631554361f735db79f3fa93669 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:52:45 +0100 Subject: gnu: r-ps: Update to 1.2.1. * gnu/packages/cran.scm (r-ps): Update to 1.2.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ffad46be01..28fa6adc6f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -492,13 +492,13 @@ print, summary, plot, update, etc. (define-public r-ps (package (name "r-ps") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "ps" version)) (sha256 - (base32 "0ai8igdkysmks1ihbp3h3s552da2hskxqwrvp4cx7vwn91x9f3wd")))) + (base32 "1zxylcb0nr4qb5v6j199mc2pfgf2bpf00jrw47jajmv59qb0fwmx")))) (build-system r-build-system) (home-page "http://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") -- cgit 1.4.1 From 65dd0e67483e79fb4511646ce727f22ebf65a347 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:53:00 +0100 Subject: gnu: r-pkgload: Update to 1.0.2. * gnu/packages/cran.scm (r-pkgload): Update to 1.0.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 28fa6adc6f..dc5e0123ad 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -539,14 +539,14 @@ is configured appropriately so R can use them.") (define-public r-pkgload (package (name "r-pkgload") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "pkgload" version)) (sha256 (base32 - "0mm0avvan528zbrcrxigl5fkd7za01fb0qhlqrqvm3ar0115cqa8")))) + "0z7jvharafahi2gv5547mk1n499isjzw06kfwymmxc0gd575d1ii")))) (build-system r-build-system) (propagated-inputs `(("r-desc" ,r-desc) -- cgit 1.4.1 From ec0ee08576d3b4bee4e1b55b481356439e42b699 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:53:09 +0100 Subject: gnu: r-ffbase: Update to 0.12.7. * gnu/packages/cran.scm (r-ffbase): Update to 0.12.7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dc5e0123ad..7e604ee197 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -891,14 +891,14 @@ in main memory.") (define-public r-ffbase (package (name "r-ffbase") - (version "0.12.5") + (version "0.12.7") (source (origin (method url-fetch) (uri (cran-uri "ffbase" version)) (sha256 (base32 - "1h5x6rbb1nrpzf4ywkizn8ij0bz3mlz46byh46ylxhicg1ribi24")))) + "04kxx2f3f0743c5nvpb7x1x0pcd220dazpd5ag1pidxbz3xa85nw")))) (build-system r-build-system) (propagated-inputs `(("r-bit" ,r-bit) -- cgit 1.4.1 From 56af171ffd965c179b2516b1e311a3bfb3f3de4c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:53:20 +0100 Subject: gnu: r-ipred: Update to 0.9-8. * gnu/packages/cran.scm (r-ipred): Update to 0.9-8. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7e604ee197..9af9fc9df7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1762,14 +1762,14 @@ provided.") (define-public r-ipred (package (name "r-ipred") - (version "0.9-7") + (version "0.9-8") (source (origin (method url-fetch) (uri (cran-uri "ipred" version)) (sha256 (base32 - "0q53cqs46501wsd4cmfsmr78l8nv1hkbamk9m0ns5qy02df5r254")))) + "01xcg3c121ndfpz9dirqxszknh4yb1p222p7f1wbwwhdrg1i27cw")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) -- cgit 1.4.1 From 5d986a3b418a29d83dd6d3ddc1556694bc10e9eb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:53:30 +0100 Subject: gnu: r-psych: Update to 1.8.10. * gnu/packages/cran.scm (r-psych): Update to 1.8.10. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9af9fc9df7..5dc45a8b72 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1789,14 +1789,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "1.8.4") + (version "1.8.10") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf")))) + "0n3frgzsfmnan6cp3yyq5h6c28v5pd7q5a42pp6byaa7n7d1v478")))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) -- cgit 1.4.1 From cea8a6074766de4228e75c3d6d5985a20fbe48cb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:53:39 +0100 Subject: gnu: r-xts: Update to 0.11-2. * gnu/packages/cran.scm (r-xts): Update to 0.11-2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5dc45a8b72..a29117b433 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2319,14 +2319,14 @@ training models for classification or ranking.") (define-public r-xts (package (name "r-xts") - (version "0.11-1") + (version "0.11-2") (source (origin (method url-fetch) (uri (cran-uri "xts" version)) (sha256 (base32 - "17d3g14xkxa1a5z5gd3gk1xjqfkjg1ik3i12q0arina8frql3jhd")))) + "1f0kxrvn13py3hk2gh2m56cqm39x3bqp1i350r5viddacrm2yxqj")))) (build-system r-build-system) (propagated-inputs `(("r-zoo" ,r-zoo))) (home-page "https://github.com/joshuaulrich/xts") -- cgit 1.4.1 From 84d0d860e1113bb1e0c2be88a5d03be252de8b28 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:53:51 +0100 Subject: gnu: r-sjmisc: Update to 2.7.6. * gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6. [propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect. --- gnu/packages/cran.scm | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a29117b433..5afad23dd4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4814,14 +4814,14 @@ vice versa), or to deal with multiple declared missing values.") (define-public r-sjmisc (package (name "r-sjmisc") - (version "2.7.5") + (version "2.7.6") (source (origin (method url-fetch) (uri (cran-uri "sjmisc" version)) (sha256 (base32 - "05fjqfr2rfk11065zqkzb9mbqd6mgdkw9jdhq3by425a7f8m2dcg")))) + "1jhrigikjpkdar3jxvi7qhqsg6lgjkjqhqll9vaay98b88rfc2im")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) @@ -4829,15 +4829,12 @@ vice versa), or to deal with multiple declared missing values.") ("r-dplyr" ,r-dplyr) ("r-haven" ,r-haven) ("r-magrittr" ,r-magrittr) - ("r-pillar" ,r-pillar) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-sjlabelled" ,r-sjlabelled) ("r-stringdist" ,r-stringdist) ("r-stringr" ,r-stringr) - ("r-tibble" ,r-tibble) - ("r-tidyr" ,r-tidyr) - ("r-tidyselect" ,r-tidyselect))) + ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/strengejacke/sjmisc") (synopsis "Data and variable transformation functions") (description -- cgit 1.4.1 From 244a5c43ec0a140a7c06cde36af11c821e0f9dee Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:54:23 +0100 Subject: gnu: r-flextable: Update to 0.4.6. * gnu/packages/cran.scm (r-flextable): Update to 0.4.6. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5afad23dd4..9f195cf416 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4896,14 +4896,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "09j2y0z7rkc0w1cl9pp1cpk6fnzzfr6245mxa3ca42z9k2cy2jfl")))) + "0fa42dvf0wyl91w4v0rywm3xgw9n03cfyl28ficrv8iabz4k4382")))) (build-system r-build-system) (propagated-inputs `(("r-gdtools" ,r-gdtools) -- cgit 1.4.1 From 3d6fa1a3ad2f7c5d473b45ad478e213c399f9f00 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:54:34 +0100 Subject: gnu: r-sessioninfo: Update to 1.1.1. * gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9f195cf416..e24adb496f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6820,14 +6820,14 @@ Rcpp, RStudio projects, and more.") (define-public r-sessioninfo (package (name "r-sessioninfo") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "sessioninfo" version)) (sha256 (base32 - "01c0m8yzadpwd825hky6as0f8ka4xyz7zfy0ih2iy7qqw11w6qn5")))) + "0j5f3l58fynxx3v0w62vqpii7miabszgljpja36xx9s8hikh8sqn")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) -- cgit 1.4.1 From fc532b452f1cc23fe74749f9f6e1e3ed014e15f0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:54:42 +0100 Subject: gnu: r-remotes: Update to 2.0.2. * gnu/packages/cran.scm (r-remotes): Update to 2.0.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e24adb496f..dc7162beab 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6843,14 +6843,14 @@ more information about packages, and where they were installed from.") (define-public r-remotes (package (name "r-remotes") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "remotes" version)) (sha256 (base32 - "1xkzlciv68jyf4j8hads0i47nxbgsy1kv7258c6zzyq66z0amhss")))) + "0rsjxmhwpr51ilsdjfqn06mj8yr2d7nckcn3arv1ljn23qfkpcxa")))) (build-system r-build-system) (home-page "https://github.com/r-lib/remotes#readme") (synopsis "R package installation from remote repositories") -- cgit 1.4.1 From 7466c3bb06c2e1162fe352815c26a5c2e514029b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:54:53 +0100 Subject: gnu: r-rcmdcheck: Update to 1.3.1. * gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1. [propagated-inputs]: Add r-sessioninfo. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dc7162beab..2521651bd1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6885,14 +6885,14 @@ directories or URLs with their associated programs.") (define-public r-rcmdcheck (package (name "r-rcmdcheck") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "rcmdcheck" version)) (sha256 (base32 - "13liz9lmx9xgc0f7pjiz3sp8ygvazx2zslbiwz3p9fimfsx1yfsg")))) + "1ga19jqix0zs7xyz2j155zyagwbv22r6dgv55g6wdjigc67qfsix")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -6904,6 +6904,7 @@ directories or URLs with their associated programs.") ("r-prettyunits" ,r-prettyunits) ("r-r6" ,r-r6) ("r-rprojroot" ,r-rprojroot) + ("r-sessioninfo" ,r-sessioninfo) ("r-withr" ,r-withr) ("r-xopen" ,r-xopen))) (home-page "https://github.com/r-Lib/rcmdcheck#readme") -- cgit 1.4.1 From a44f8b00fe0d0e1dd88c1d2f2f3e54bb04788b10 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 7 Nov 2018 11:55:11 +0100 Subject: gnu: r-pander: Update to 0.6.3. * gnu/packages/cran.scm (r-pander): Update to 0.6.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2521651bd1..ec950ce0ac 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6941,14 +6941,14 @@ quick reporting.") (define-public r-pander (package (name "r-pander") - (version "0.6.2") + (version "0.6.3") (source (origin (method url-fetch) (uri (cran-uri "pander" version)) (sha256 (base32 - "0gd7rqkpbraznip8jmri9lqa8ajg1sryyplhd6m633wg91whiipi")))) + "1bd9sdghlsppmff18k5fg3i0visq9f4wc82rlhwq5m82bmgdgnyi")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) -- cgit 1.4.1 From 3a4c6288c81d91ce48200a310ad0d83bddfb7a5a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:53:15 +0100 Subject: gnu: Add r-aggregation. * gnu/packages/cran.scm (r-aggregation): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec950ce0ac..33dda347b5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3071,6 +3071,26 @@ Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden, Cambridge University Press, 1993.") (license license:gpl2))) +(define-public r-aggregation + (package + (name "r-aggregation") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "aggregation" version)) + (sha256 + (base32 + "0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/aggregation/") + (synopsis "Methods for p-value aggregation") + (description + "This package contains functionality for performing the following methods +of p-value aggregation: Fisher's method, the Lancaster method (weighted +Fisher's method), and Sidak correction.") + (license license:gpl3))) + (define-public r-quantmod (package (name "r-quantmod") -- cgit 1.4.1 From ff939ef4d53af151683fbbae389cf60d76aef6ae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:55:06 +0100 Subject: gnu: Add r-h5. * gnu/packages/cran.scm (r-h5): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 33dda347b5..e22c5010d9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -32,6 +32,7 @@ #:use-module (guix download) #:use-module (guix utils) #:use-module (guix build-system r) + #:use-module (gnu packages base) #:use-module (gnu packages compression) #:use-module (gnu packages gcc) #:use-module (gnu packages gnome) @@ -3472,6 +3473,36 @@ dendrograms.") ;; Either version of the license. (license (list license:gpl2 license:gpl3)))) +(define-public r-h5 + (package + (name "r-h5") + (version "0.9.9") + (source + (origin + (method url-fetch) + (uri (cran-uri "h5" version)) + (sha256 + (base32 + "14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx")))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib) + ("hdf5" ,hdf5))) + (native-inputs + `(("which" ,which))) + (propagated-inputs + `(("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/mannau/h5") + (synopsis "Interface to the HDF5 Library") + (description + "This package provides an S4 interface to the HDF5 library supporting +fast storage and retrieval of R-objects like vectors, matrices and arrays to +binary files in a language independent format. The HDF5 format can therefore +be used as an alternative to R's save/load mechanism. Since h5 is able to +access only subsets of stored data it can also handle data sets which do not +fit into memory.") + (license license:bsd-2))) + (define-public r-cgdsr (package (name "r-cgdsr") -- cgit 1.4.1 From f338e4807f71503071da1af54b887e7f08a078da Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:46:29 +0100 Subject: gnu: Add r-rgl. * gnu/packages/cran.scm (r-rgl): New variable. --- gnu/packages/cran.scm | 48 +++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 47 insertions(+), 1 deletion(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e22c5010d9..6840a2fc66 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -34,10 +34,13 @@ #:use-module (guix build-system r) #:use-module (gnu packages base) #:use-module (gnu packages compression) + #:use-module (gnu packages fontutils) #:use-module (gnu packages gcc) + #:use-module (gnu packages gl) #:use-module (gnu packages gnome) #:use-module (gnu packages gtk) #:use-module (gnu packages haskell) + #:use-module (gnu packages image) #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) @@ -46,7 +49,8 @@ #:use-module (gnu packages python) #:use-module (gnu packages statistics) #:use-module (gnu packages tls) - #:use-module (gnu packages web)) + #:use-module (gnu packages web) + #:use-module (gnu packages xorg)) (define-public r-clipr (package @@ -7376,3 +7380,45 @@ netCDF files.") "This package provides a convenient tool to install and update Bioconductor packages.") (license license:artistic2.0))) + +(define-public r-rgl + (package + (name "r-rgl") + (version "0.99.16") + (source + (origin + (method url-fetch) + (uri (cran-uri "rgl" version)) + (sha256 + (base32 + "0q8sg8fr0140ilssqhscaxkjc29w1rpp6f4k50amw3zzs9g58ak9")))) + (build-system r-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("freetype" ,freetype) + ("libpng" ,libpng) + ("glu" ,glu) + ("libx11" ,libx11) + ("ghc-pandoc" ,ghc-pandoc) + ("zlib" ,zlib))) + (propagated-inputs + `(("r-crosstalk" ,r-crosstalk) + ("r-htmltools" ,r-htmltools) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-jsonlite" ,r-jsonlite) + ("r-knitr" ,r-knitr) + ("r-magrittr" ,r-magrittr) + ("r-manipulatewidget" ,r-manipulatewidget) + ("r-shiny" ,r-shiny))) + (home-page "https://r-forge.r-project.org/projects/rgl/") + (synopsis "3D visualization using OpenGL") + (description + "This package provides medium to high level functions for 3D interactive graphics, +including functions modelled on base graphics (@code{plot3d()}, etc.) as well +as functions for constructing representations of geometric +objects (@code{cube3d()}, etc.). Output may be on screen using OpenGL, or to +various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D +image formats, including PNG, Postscript, SVG, PGF.") + ;; Any version of the GPL. + (license (list license:gpl2+ license:gpl3+)))) -- cgit 1.4.1 From 213e72a18dc20ba4ae1275e1f48104737c2a7526 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:46:41 +0100 Subject: gnu: Add r-multicool. * gnu/packages/cran.scm (r-multicool): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6840a2fc66..06bdaa8d61 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7422,3 +7422,24 @@ various standard 3D file formats including WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.") ;; Any version of the GPL. (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-multicool + (package + (name "r-multicool") + (version "0.1-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "multicool" version)) + (sha256 + (base32 + "1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v")))) + (build-system r-build-system) + (propagated-inputs `(("r-rcpp" ,r-rcpp))) + (home-page "https://cran.r-project.org/web/packages/multicool/") + (synopsis "Permutations of multisets in cool-lex order") + (description + "This package provides a set of tools to permute multisets without loops +or hash tables and to generate integer partitions. Cool-lex order is similar +to colexicographical order.") + (license license:gpl2))) -- cgit 1.4.1 From 4106e6ad87cb9b4bd571bc1a91cb026719770095 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:46:51 +0100 Subject: gnu: Add r-misc3d. * gnu/packages/cran.scm (r-misc3d): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 06bdaa8d61..604ba951c6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7443,3 +7443,23 @@ image formats, including PNG, Postscript, SVG, PGF.") or hash tables and to generate integer partitions. Cool-lex order is similar to colexicographical order.") (license license:gpl2))) + +(define-public r-misc3d + (package + (name "r-misc3d") + (version "0.8-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "misc3d" version)) + (sha256 + (base32 + "0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/misc3d/") + (synopsis "Miscellaneous 3D Plots") + (description + "This package provides a collection of miscellaneous 3d plots, including +isosurfaces.") + ;; Any version of the GPL. + (license (list license:gpl2+ license:gpl3+)))) -- cgit 1.4.1 From da256afb9ed35bb15e7cab01a3aab76f1ec5639d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:47:03 +0100 Subject: gnu: Add r-ks. * gnu/packages/cran.scm (r-ks): New variable. --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 604ba951c6..8c5c9258a9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7463,3 +7463,35 @@ to colexicographical order.") isosurfaces.") ;; Any version of the GPL. (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-ks + (package + (name "r-ks") + (version "1.11.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ks" version)) + (sha256 + (base32 + "0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d")))) + (build-system r-build-system) + (propagated-inputs + `(("r-fnn" ,r-fnn) + ("r-kernlab" ,r-kernlab) + ("r-kernsmooth" ,r-kernsmooth) + ("r-matrix" ,r-matrix) + ("r-mclust" ,r-mclust) + ("r-mgcv" ,r-mgcv) + ("r-misc3d" ,r-misc3d) + ("r-multicool" ,r-multicool) + ("r-mvtnorm" ,r-mvtnorm))) + (home-page "http://www.mvstat.net/tduong/") + (synopsis "Kernel smoothing") + (description + "This package provides kernel smoothers for univariate and multivariate +data, including density functions, density derivatives, cumulative +distributions, modal clustering, discriminant analysis, and two-sample +hypothesis testing.") + ;; Either version of the GPL. + (license (list license:gpl2 license:gpl3)))) -- cgit 1.4.1 From cf383cf08ff1b68a9610cddf66c1851b2aeddaab Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:47:12 +0100 Subject: gnu: Add r-feature. * gnu/packages/cran.scm (r-feature): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c5c9258a9..ef3c148da1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7495,3 +7495,29 @@ distributions, modal clustering, discriminant analysis, and two-sample hypothesis testing.") ;; Either version of the GPL. (license (list license:gpl2 license:gpl3)))) + +(define-public r-feature + (package + (name "r-feature") + (version "1.2.13") + (source + (origin + (method url-fetch) + (uri (cran-uri "feature" version)) + (sha256 + (base32 + "07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ks" ,r-ks) + ("r-misc3d" ,r-misc3d) + ("r-rgl" ,r-rgl))) + (home-page "http://www.mvstat.net/tduong/") + (synopsis "Inferential feature significance for kernel density estimation") + (description + "The feature package contains functions to display and compute kernel +density estimates, significant gradient and significant curvature regions. +Significant gradient and/or curvature regions often correspond to significant +features (e.g. local modes).") + ;; Either version of the GPL. + (license (list license:gpl2 license:gpl3)))) -- cgit 1.4.1 From 06bc7b82f7c6cb623911867f55b58b3316d3ddfc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 16:47:19 +0100 Subject: gnu: Add r-arm. * gnu/packages/cran.scm (r-arm): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ef3c148da1..83d8f510a1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7521,3 +7521,30 @@ Significant gradient and/or curvature regions often correspond to significant features (e.g. local modes).") ;; Either version of the GPL. (license (list license:gpl2 license:gpl3)))) + +(define-public r-arm + (package + (name "r-arm") + (version "1.10-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "arm" version)) + (sha256 + (base32 + "0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-coda" ,r-coda) + ("r-lme4" ,r-lme4) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-nlme" ,r-nlme))) + (home-page "https://cran.r-project.org/web/packages/arm/") + (synopsis "Data analysis using regression and multilevel/hierarchical models") + (description + "This package provides functions to accompany A. Gelman and J. Hill, +Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge +University Press, 2007.") + (license license:gpl3+))) -- cgit 1.4.1 From f87a18e66079a540beea99fe6475fccb49a9ff68 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 18:58:47 +0100 Subject: gnu: r-rcpp: Update to 1.0.0. * gnu/packages/cran.scm (r-rcpp): Update to 1.0.0. [native-inputs]: Add r-knitr. --- gnu/packages/cran.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 83d8f510a1..4ecd1c6a21 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -571,14 +571,16 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "0.12.19") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "10mmiaawv9iwglc6z4y51mdpsfb1sivqmwr6xnfqkllcnpabdbk3")))) + (base32 "1hlbw4k79q9ich4w27b01gsvwrsnrflii8zjlcmgfzm1vpq8ndxp")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") (description -- cgit 1.4.1 From fccb24501a88d10352a106d160bcf11c284144c1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 18:59:32 +0100 Subject: gnu: r-jomo: Update to 2.6-5. * gnu/packages/cran.scm (r-jomo): Update to 2.6-5. [propagated-inputs]: Add r-mass. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4ecd1c6a21..ecead0c5a4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2049,17 +2049,18 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-4") + (version "2.6-5") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x")))) + "109q5m69clrvvialxdxznd0wdb54ajhx84nj8slx8bf909a427mj")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) + ("r-mass" ,r-mass) ("r-ordinal" ,r-ordinal) ("r-survival" ,r-survival))) (home-page "https://cran.r-project.org/web/packages/jomo/") -- cgit 1.4.1 From 492ec49890f020c1d4ad4eaf3e21e235b79e989d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 9 Nov 2018 18:59:50 +0100 Subject: gnu: r-tmb: Update to 1.7.15. * gnu/packages/cran.scm (r-tmb): Update to 1.7.15. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ecead0c5a4..45526c7072 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6565,14 +6565,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.7.14") + (version "1.7.15") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl")))) + "1r2d8c5iazihba42sn33yarv0dcfiy989sx64zcf14zr8k6cgjzs")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From 2a4c5877a996007f2c6e058fb973fa7d5dcfdbff Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 11 Nov 2018 23:12:10 +0100 Subject: gnu: r-ggpubr: Update to 0.1.9. * gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 45526c7072..2c1151bf6e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4450,14 +4450,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.1.8") + (version "0.1.9") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0psl2zndm4wk6nnj1nv305islpxfvfgd87gjh2ph8yqn4mxpnfi1")))) + "0rvfgii2gxarra7d33n6c63ky0mivxxyx35acsrn94xkbd8mbcsj")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) -- cgit 1.4.1 From 06910a86896aba25adad104c96303624e7479938 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 11 Nov 2018 23:12:22 +0100 Subject: gnu: r-rcmdcheck: Update to 1.3.2. * gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2c1151bf6e..a74ffa773f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6943,14 +6943,14 @@ directories or URLs with their associated programs.") (define-public r-rcmdcheck (package (name "r-rcmdcheck") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "rcmdcheck" version)) (sha256 (base32 - "1ga19jqix0zs7xyz2j155zyagwbv22r6dgv55g6wdjigc67qfsix")))) + "0ys1nd7690mhwzslyzg8fq1wxr28nz8g6av5iykkrshb8lkxg7ly")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) -- cgit 1.4.1 From 0c92f3734e64086599940cf32a37b4cdd3be3648 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 14 Nov 2018 14:32:54 +0100 Subject: gnu: Add r-rjags. * gnu/packages/cran.scm (r-rjags): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a74ffa773f..093c51ee9a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4728,6 +4728,32 @@ Extract argument descriptions and other parts of the help pages of functions.") (license license:gpl2+))) +(define-public r-rjags + (package + (name "r-rjags") + (version "4-8") + (source + (origin + (method url-fetch) + (uri (cran-uri "rjags" version)) + (sha256 + (base32 + "17xmjksj69f9wk4x71jxk4cgiqhaf2fj6bjm0mgzp4qln5x84a8m")))) + (build-system r-build-system) + (propagated-inputs + `(("r-coda" ,r-coda))) + (inputs + `(("jags" ,jags))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "http://mcmc-jags.sourceforge.net") + (synopsis "Bayesian graphical models using MCMC") + (description + "This package provides an R interface to the JAGS MCMC library. JAGS is +Just Another Gibbs Sampler. It is a program for analysis of Bayesian +hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") + (license license:gpl2))) + (define-public r-rdpack (package (name "r-rdpack") -- cgit 1.4.1 From 488dc4e1e27327831d08cb8f33a9128dc1b7eb26 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:22:28 +0100 Subject: gnu: Add r-abn. * gnu/packages/cran.scm (r-abn): New variable. --- gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 093c51ee9a..446062cce6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4816,6 +4816,43 @@ be added or removed. When working with Word documents, a cursor can be used to help insert or delete content at a specific location in the document.") (license license:gpl3))) +(define-public r-abn + (package + (name "r-abn") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "abn" version)) + (sha256 + (base32 + "00k0razgdb5y5f62622fm7rxkcxrxg470nyyb02dvpfp60254kvs")))) + (build-system r-build-system) + (inputs + `(("gsl" ,gsl))) + (propagated-inputs + `(("r-cairo" ,r-cairo) + ("r-lme4" ,r-lme4) + ("r-mass" ,r-mass) + ("r-nnet" ,r-nnet) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rjags" ,r-rjags))) + (home-page "http://www.r-bayesian-networks.org") + (synopsis "Modelling multivariate data with additive bayesian networks") + (description + "Bayesian network analysis is a form of probabilistic graphical models +which derives from empirical data a directed acyclic graph, DAG, describing +the dependency structure between random variables. An additive Bayesian +network model consists of a form of a DAG where each node comprises a +@dfn{generalized linear model} (GLM). Additive Bayesian network models are +equivalent to Bayesian multivariate regression using graphical modelling, they +generalises the usual multivariable regression, GLM, to multiple dependent +variables. This package provides routines to help determine optimal Bayesian +network models for a given data set, where these models are used to identify +statistical dependencies in messy, complex data.") + (license license:gpl2+))) + (define-public r-snakecase (package (name "r-snakecase") -- cgit 1.4.1 From ffdeda3ce06ada0f50455e1bf70c9a2329f2d660 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:22:37 +0100 Subject: gnu: Add r-acd. * gnu/packages/cran.scm (r-acd): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 446062cce6..a5cdbe31b6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4853,6 +4853,26 @@ network models for a given data set, where these models are used to identify statistical dependencies in messy, complex data.") (license license:gpl2+))) +(define-public r-acd + (package + (name "r-acd") + (version "1.5.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ACD" version)) + (sha256 + (base32 + "1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6")))) + (properties `((upstream-name . "ACD"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/ACD/") + (synopsis "Categorical data analysis with complete or missing responses") + (description + "This package provides tools for categorical data analysis with complete +or missing responses.") + (license license:gpl2+))) + (define-public r-snakecase (package (name "r-snakecase") -- cgit 1.4.1 From acbf23da447d7f0f7acec4eeef83db9bac800b03 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:22:46 +0100 Subject: gnu: Add r-acdm. * gnu/packages/cran.scm (r-acdm): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a5cdbe31b6..d7b331f674 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4873,6 +4873,34 @@ statistical dependencies in messy, complex data.") or missing responses.") (license license:gpl2+))) +(define-public r-acdm + (package + (name "r-acdm") + (version "1.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "ACDm" version)) + (sha256 + (base32 + "0b4f02ga5ra66mbrm79g0bnlzmii82rks9kmxixxqgf18yhlyjil")))) + (properties `((upstream-name . "ACDm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-plyr" ,r-plyr) + ("r-rsolnp" ,r-rsolnp) + ("r-zoo" ,r-zoo))) + (home-page "https://cran.r-project.org/web/packages/ACDm/") + (synopsis "Tools for Autoregressive Conditional Duration Models") + (description + "ACDm is a package for Autoregressive Conditional Duration (ACD, Engle +and Russell, 1998) models. It creates trade, price or volume durations from +transactions (tic) data, performs diurnal adjustments, fits various ACD models +and tests them.") + (license license:gpl2+))) + (define-public r-snakecase (package (name "r-snakecase") -- cgit 1.4.1 From 08bf097a0bdd60042195abe89d361b8b664f5a94 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:22:54 +0100 Subject: gnu: Add r-overlap. * gnu/packages/cran.scm (r-overlap): New variable. --- gnu/packages/cran.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index d7b331f674..b7b1100423 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4901,6 +4901,27 @@ transactions (tic) data, performs diurnal adjustments, fits various ACD models and tests them.") (license license:gpl2+))) +(define-public r-overlap + (package + (name "r-overlap") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "overlap" version)) + (sha256 + (base32 + "1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/overlap/") + (synopsis "Estimates of coefficient of overlapping for animal activity patterns") + (description + "This package provides functions to fit kernel density functions to data +on temporal activity patterns of animals; estimate coefficients of overlapping +of densities for two species; and calculate bootstrap estimates of confidence +intervals.") + (license license:gpl3+))) + (define-public r-snakecase (package (name "r-snakecase") -- cgit 1.4.1 From 3cef715a46c1f74e478e3c672e3e587cef3c18bb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:23:04 +0100 Subject: gnu: Add r-circular. * gnu/packages/cran.scm (r-circular): New variable. --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b7b1100423..73ad9a8bda 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7683,3 +7683,28 @@ features (e.g. local modes).") Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.") (license license:gpl3+))) + +(define-public r-circular + (package + (name "r-circular") + (version "0.4-93") + (source + (origin + (method url-fetch) + (uri (cran-uri "circular" version)) + (sha256 + (base32 + "0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn")))) + (build-system r-build-system) + (propagated-inputs + `(("r-boot" ,r-boot) + ("r-mvtnorm" ,r-mvtnorm))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/circular/") + (synopsis "Circular statistics") + (description + "This package provides tools for circular statistics, from \"Topics in +circular Statistics\" (2001) S. Rao Jammalamadaka and A. SenGupta, World +Scientific.") + (license license:gpl2+))) -- cgit 1.4.1 From 10483a64eebf753ae17695d3c027e5fefa0df644 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:23:16 +0100 Subject: gnu: Add r-activity. * gnu/packages/cran.scm (r-activity): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 73ad9a8bda..8513dff4f5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7708,3 +7708,29 @@ University Press, 2007.") circular Statistics\" (2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific.") (license license:gpl2+))) + +(define-public r-activity + (package + (name "r-activity") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "activity" version)) + (sha256 + (base32 + "1lqajgxfps2h6amz1791vp3f52rs9ghmanq1nqfxqd2jmk3idkrx")))) + (build-system r-build-system) + (propagated-inputs + `(("r-circular" ,r-circular) + ("r-overlap" ,r-overlap) + ("r-pbapply" ,r-pbapply))) + (home-page "https://cran.r-project.org/web/packages/activity/") + (synopsis "Animal activity statistics") + (description + "This package provides functions to fit kernel density functions to +animal activity time data; plot activity distributions; quantify overall +levels of activity; statistically compare activity metrics through +bootstrapping; and evaluate variation in linear variables with time (or other +circular variables).") + (license license:gpl3))) -- cgit 1.4.1 From e4f4a04a51c657fd9cedcc8c08e8fad858533777 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 12 Nov 2018 16:23:26 +0100 Subject: gnu: Add r-ouch. * gnu/packages/cran.scm (r-ouch): New variable. --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8513dff4f5..6ce9bdd16f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7734,3 +7734,23 @@ levels of activity; statistically compare activity metrics through bootstrapping; and evaluate variation in linear variables with time (or other circular variables).") (license license:gpl3))) + +(define-public r-ouch + (package + (name "r-ouch") + (version "2.11-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ouch" version)) + (sha256 + (base32 + "0xkwwi62vdahlcg3k32zb1nfwsx87zdssk79mvcxgfsw9bw4gahx")))) + (build-system r-build-system) + (propagated-inputs `(("r-subplex" ,r-subplex))) + (home-page "http://kingaa.github.io/ouch/") + (synopsis "Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses") + (description + "This package provides tools to fit and compare Ornstein-Uhlenbeck models +for evolution along a phylogenetic tree.") + (license license:gpl2+))) -- cgit 1.4.1 From e21659c70bf06c138f936270f9dd693d3e95f9af Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 19 Nov 2018 17:16:35 +0100 Subject: gnu: r-dimred: Update to 0.2.2. * gnu/packages/cran.scm (r-dimred): Update to 0.2.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6ce9bdd16f..150b3ea90a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1593,14 +1593,14 @@ the Kaplan-Meier and Aalen-Johansen methods.") (define-public r-dimred (package (name "r-dimred") - (version "0.1.0") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "dimRed" version)) (sha256 (base32 - "0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v")))) + "0ssy2qriiy6zdawriqcbl67qiq68ipml3frq7aqlq70r2fqyyw48")))) (properties `((upstream-name . "dimRed"))) (build-system r-build-system) (propagated-inputs `(("r-drr" ,r-drr))) -- cgit 1.4.1 From e396b378220624254a55ec0b2869e68b23a6c9d4 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 19 Nov 2018 17:17:03 +0100 Subject: gnu: r-recipes: Update to 0.1.4. * gnu/packages/cran.scm (r-recipes): Update to 0.1.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 150b3ea90a..87b9ee29f1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1864,14 +1864,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy")))) + "0bwijw4427v2k5z3qci2kyr5dyzql8b3lvf88rwy16p741jckjsn")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) -- cgit 1.4.1 From 1659c5dd27578e7be0d923fc4dde032ff043adab Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 19 Nov 2018 17:17:25 +0100 Subject: gnu: r-ggpubr: Update to 0.2. * gnu/packages/cran.scm (r-ggpubr): Update to 0.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 87b9ee29f1..dccc23d1f0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4450,14 +4450,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.1.9") + (version "0.2") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0rvfgii2gxarra7d33n6c63ky0mivxxyx35acsrn94xkbd8mbcsj")))) + "0rkpcjb1x7lvhj68aam5airbi534jqyiq12x5xk40a25iifhghq6")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) -- cgit 1.4.1 From fba7dbe76c5d8c111b9d76ebea873c0d514c1aed Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 19 Nov 2018 17:17:54 +0100 Subject: gnu: r-sjstats: Update to 0.17.2. * gnu/packages/cran.scm (r-sjstats): Update to 0.17.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index dccc23d1f0..22305b9cfd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6725,14 +6725,14 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.17.1") + (version "0.17.2") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 (base32 - "0s9b0xr8gmcm0kh48jkwk8ns0lqknd8kpys4f7czf0xwzmcx2n1z")))) + "0c7g35vn7r9rylhp0gj1yfslg7jybwrhpqpp7vdcd90xfccih24r")))) (build-system r-build-system) (propagated-inputs `(("r-bayesplot" ,r-bayesplot) -- cgit 1.4.1 From 278e0f65064dcf7f8c029c94b143429e7f787135 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 19 Nov 2018 17:18:19 +0100 Subject: gnu: r-ggeffects: Update to 0.7.0. * gnu/packages/cran.scm (r-ggeffects): Update to 0.7.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 22305b9cfd..2b9629058d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6803,14 +6803,14 @@ differentiation.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "00l02g7yssqxmcmbrzk2wsj3i9ywd0xsy0rmbfh57q1qi76a1wq1")))) + "070c3fxmzajq2fy816s5pfqdyjlnzkabj97z7fcsva4h5rnqi9d6")))) (build-system r-build-system) (propagated-inputs `(("r-crayon" ,r-crayon) -- cgit 1.4.1 From 749872a5ed6b5ad20b64799c00ea8c13433366c1 Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Mon, 19 Nov 2018 17:18:41 +0100 Subject: gnu: r-biocmanager: Update to 1.30.4. * gnu/packages/cran.scm (r-biocmanager): Update to 1.30.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/cran.scm') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2b9629058d..f08a204fb8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7499,14 +7499,14 @@ netCDF files.") (define-public r-biocmanager (package (name "r-biocmanager") - (version "1.30.3") + (version "1.30.4") (source (origin (method url-fetch) (uri (cran-uri "BiocManager" version)) (sha256 (base32 - "0mfvx1xzsgiag9p42kdyqg8fvajyakrdy3z2smhdlaawzbi0qmax")))) + "0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah")))) (properties `((upstream-name . "BiocManager"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/BiocManager/") -- cgit 1.4.1