From af5236739e2d73132e7ae4678030f0ae4356729c Mon Sep 17 00:00:00 2001 From: Paul Garlick Date: Wed, 28 Nov 2018 19:48:19 +0000 Subject: gnu: petsc-openmpi: Configure with support for HYPRE preconditioner. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. Signed-off-by: Ludovic Courtès --- gnu/packages/maths.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) (limited to 'gnu/packages/maths.scm') diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index f1b5bb0646..f88cede68a 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1767,6 +1767,7 @@ scientific applications modeled by partial differential equations.") (name "petsc-openmpi") (inputs `(("hdf5" ,hdf5-parallel-openmpi) + ("hypre" ,hypre-openmpi) ("metis" ,metis) ("mumps" ,mumps-openmpi) ("openmpi" ,openmpi) @@ -1776,7 +1777,8 @@ scientific applications modeled by partial differential equations.") (arguments (substitute-keyword-arguments (package-arguments petsc) ((#:configure-flags cf) - ``("--with-mpiexec=mpirun" + ``("--with-hypre=1" + "--with-mpiexec=mpirun" "--with-metis=1" "--with-mumps=1" "--with-scalapack=1" -- cgit 1.4.1 From 5537603fbf43525ab6a5ba9a4e911ae3ad9f712a Mon Sep 17 00:00:00 2001 From: Kei Kebreau Date: Sat, 1 Dec 2018 23:15:14 -0500 Subject: gnu: Rename "octave" to "octave-cli". * gnu/packages/maths.scm (octave): Rename to... (octave-cli): ...this. [name]: Change to "octave-cli". (qtoctave): Inherit from octave-cli. (flann)[inputs]: Adjust accordingly. * gnu/packages/engineering.scm (qucs)[inputs]: Likewise. (qucs-s)[inputs]: Likewise. * gnu/packages/machine-learning.scm (shogun)[inputs]: Likewise. --- gnu/packages/engineering.scm | 4 ++-- gnu/packages/machine-learning.scm | 2 +- gnu/packages/maths.scm | 16 ++++++++-------- 3 files changed, 11 insertions(+), 11 deletions(-) (limited to 'gnu/packages/maths.scm') diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 8ef9a5c277..308501f882 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -1709,7 +1709,7 @@ parallel computing platforms. It also supports serial execution.") ("gcc-toolchain" ,gcc-toolchain) ("iverilog" ,iverilog) ("libtool" ,libtool) - ("octave" ,octave) + ("octave" ,octave-cli) ("qt4" ,qt-4) ("sed" ,sed))) (home-page "http://qucs.sourceforge.net/") @@ -1839,7 +1839,7 @@ simulations are also supported.") ("libtool" ,libtool) ("mpi" ,openmpi) ("ngspice" ,ngspice) - ("octave" ,octave) + ("octave" ,octave-cli) ("qt4" ,qt-4) ("qucs" ,qucs) ("sed" ,sed) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 3f525e39a5..084e62cca4 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -495,7 +495,7 @@ sample proximities between pairs of cases.") `(("python" ,python) ("numpy" ,python-numpy) ("r-minimal" ,r-minimal) - ("octave" ,octave) + ("octave" ,octave-cli) ("swig" ,swig) ("eigen" ,eigen) ("hdf5" ,hdf5) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index f88cede68a..e2f3e662c7 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1413,9 +1413,9 @@ can solve two kinds of problems: ;; For a fully featured Octave, users are strongly recommended also to install ;; the following packages: less, ghostscript, gnuplot. -(define-public octave +(define-public octave-cli (package - (name "octave") + (name "octave-cli") (version "4.4.1") (source (origin @@ -1498,20 +1498,20 @@ script files.") (license license:gpl3+))) (define-public qtoctave - (package (inherit octave) + (package (inherit octave-cli) (name "qtoctave") (source (origin - (inherit (package-source octave)))) + (inherit (package-source octave-cli)))) (inputs `(("qscintilla" ,qscintilla) ("qt" ,qtbase) - ,@(package-inputs octave))) + ,@(package-inputs octave-cli))) (native-inputs `(("qttools" , qttools) ;for lrelease ("texlive" ,texlive) ;for texi2dvi - ,@(package-native-inputs octave))) + ,@(package-native-inputs octave-cli))) (arguments - (substitute-keyword-arguments (package-arguments octave) + (substitute-keyword-arguments (package-arguments octave-cli) ((#:phases phases) `(modify-phases ,phases (add-before 'configure 'patch-qscintilla-library-name @@ -3580,7 +3580,7 @@ in finite element programs.") `(("unzip" ,unzip))) (inputs `(("hdf5" ,hdf5) - ("octave" ,octave) + ("octave" ,octave-cli) ("python" ,python-2) ; print syntax ;; ("python2-numpy" ,python2-numpy) ; only required for the tests ("zlib" ,zlib))) -- cgit 1.4.1 From e0ae7e73746e99dc0fdd1f86e6d0299827cf9d98 Mon Sep 17 00:00:00 2001 From: Kei Kebreau Date: Sat, 1 Dec 2018 23:37:50 -0500 Subject: gnu: Rename "qtoctave" to "octave". * gnu/packages/maths.scm (qtoctave): Define in terms of 'deprectated-package'. (octave): New variable, formerly known as "qtoctave". --- gnu/packages/maths.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) (limited to 'gnu/packages/maths.scm') diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index e2f3e662c7..e088869682 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1497,9 +1497,9 @@ Work may be performed both at the interactive command-line as well as via script files.") (license license:gpl3+))) -(define-public qtoctave +(define-public octave (package (inherit octave-cli) - (name "qtoctave") + (name "octave") (source (origin (inherit (package-source octave-cli)))) (inputs @@ -1525,6 +1525,9 @@ script files.") "qscintilla2_qt5")) #t)))))))) +(define-public qtoctave + (deprecated-package "qtoctave" octave)) + (define-public opencascade-oce (package (name "opencascade-oce") -- cgit 1.4.1