From 25d84d3122b8de29a67d69e8ff5de6660b8d44c5 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Sun, 1 Jan 2017 16:37:08 +1000 Subject: gnu: python-dendropy: Update to 4.2.0. * gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0. [source]: Remove patch. (python2-dendropy)[source]: Use the same source as python-dendropy. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. --- .../python-dendropy-exclude-failing-tests.patch | 21 --------------------- 1 file changed, 21 deletions(-) delete mode 100644 gnu/packages/patches/python-dendropy-exclude-failing-tests.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/python-dendropy-exclude-failing-tests.patch b/gnu/packages/patches/python-dendropy-exclude-failing-tests.patch deleted file mode 100644 index 288a58b06f..0000000000 --- a/gnu/packages/patches/python-dendropy-exclude-failing-tests.patch +++ /dev/null @@ -1,21 +0,0 @@ -diff --git a/dendropy/test/test_phylogenetic_distance_matrix.py b/dendropy/test/test_phylogenetic_distance_matrix.py -index 10c05f5..a18ba52 100644 ---- a/dendropy/test/test_phylogenetic_distance_matrix.py -+++ b/dendropy/test/test_phylogenetic_distance_matrix.py -@@ -793,7 +793,7 @@ class PdmUpgmaTree(PdmTreeChecker, unittest.TestCase): - expected_tree=expected_tree) - - class NodeToNodeDistancesTest(unittest.TestCase): -- -+ @unittest.expectedFailure - def test_distances(self): - ## get distances from ape - # library(ape) -@@ -825,6 +825,7 @@ class NodeToNodeDistancesTest(unittest.TestCase): - e = reference_table[nd1.label, nd2.label] - self.assertAlmostEqual(d, e) - -+ @unittest.expectedFailure - def test_mrca(self): - test_runs = [ - "hiv1.newick", -- cgit 1.4.1