From 4732e6ee84fea4e58b8a62cad054b10966f4f6e6 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Mon, 3 Jul 2017 23:00:14 +1000 Subject: gnu: blast+: Update to 2.6.0. * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. Add patch. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python. * gnu/packages/patches/blast+-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. --- gnu/packages/patches/blast+-fix-makefile.patch | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 gnu/packages/patches/blast+-fix-makefile.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/blast+-fix-makefile.patch b/gnu/packages/patches/blast+-fix-makefile.patch new file mode 100644 index 0000000000..bfa46a7e51 --- /dev/null +++ b/gnu/packages/patches/blast+-fix-makefile.patch @@ -0,0 +1,15 @@ +Without this patch, the 'make install' attempts to 'install' a directory, which causes an error. + +diff --git a/c++/src/build-system/Makefile.in.top b/c++/src/build-system/Makefile.in.top +index 1abe44f..d6000b3 100644 +--- a/c++/src/build-system/Makefile.in.top ++++ b/c++/src/build-system/Makefile.in.top +@@ -51,7 +51,7 @@ install-toolkit: + done + cd $(includedir0) && find * -name CVS -prune -o -print |\ + cpio -pd $(pincludedir) +- $(INSTALL) -m 644 $(incdir)/* $(pincludedir) ++ cp -R $(incdir)/* $(pincludedir) + ## set up appropriate build and status directories somewhere under $(libdir)? + + install-gbench: -- cgit 1.4.1