From 0047d26a220805a99c84d9b87c73e012a63919e1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 14 Jan 2016 14:36:32 +0100 Subject: gnu: bowtie: Update to 2.2.6. * gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6. [source]: Remove patch; do not set CC and CPP variables. [inputs]: Add "tbb". [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom "install" phase. * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch file. --- gnu/packages/patches/bowtie-fix-makefile.patch | 31 -------------------------- 1 file changed, 31 deletions(-) delete mode 100644 gnu/packages/patches/bowtie-fix-makefile.patch (limited to 'gnu/packages/patches') diff --git a/gnu/packages/patches/bowtie-fix-makefile.patch b/gnu/packages/patches/bowtie-fix-makefile.patch deleted file mode 100644 index 5ac65731cb..0000000000 --- a/gnu/packages/patches/bowtie-fix-makefile.patch +++ /dev/null @@ -1,31 +0,0 @@ -From 4a99b0023bdfbbe486b9649489a32ea184c18c9a Mon Sep 17 00:00:00 2001 -From: Valentin Antonescu -Date: Tue, 2 Dec 2014 11:19:13 -0500 -Subject: [PATCH] Make sure the Mavericks test happens only under Darwin. - ---- - Makefile | 11 +++++------ - 1 file changed, 5 insertions(+), 6 deletions(-) - -diff --git a/Makefile b/Makefile -index d74f7c8..a4cdfa7 100644 ---- a/Makefile -+++ b/Makefile -@@ -54,12 +54,11 @@ endif - MACOS = 0 - ifneq (,$(findstring Darwin,$(shell uname))) - MACOS = 1 --endif -- --ifneq (,$(findstring 13,$(shell uname -r))) -- CPP = clang++ -- CC = clang -- EXTRA_FLAGS += -stdlib=libstdc++ -+ ifneq (,$(findstring 13,$(shell uname -r))) -+ CPP = clang++ -+ CC = clang -+ EXTRA_FLAGS += -stdlib=libstdc++ -+ endif - endif - - POPCNT_CAPABILITY ?= 1 -- cgit 1.4.1