From 912ad5cdd3d5a4c513e71cee5947e00a63a4b673 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:39 +0100 Subject: gnu: r-microbenchmark: Update to 1.4.9. * gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4.9. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f60b299eac..e00b09278c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1500,13 +1500,13 @@ from knitr Rmarkdown.") (define-public r-microbenchmark (package (name "r-microbenchmark") - (version "1.4-7") + (version "1.4.9") (source (origin (method url-fetch) (uri (cran-uri "microbenchmark" version)) (sha256 (base32 - "1xl4m4yl4h2zcjiz8wsa7f3sh55qg2xr3sgpvz18rlix6b3173r6")))) + "1lpzpffnjiwnxxl0jhrvyj88fvxqksnpccbpq953xwqf6ypjqga4")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/microbenchmark/") (synopsis "Accurate timing functions for R") -- cgit 1.4.1 From 360cfbcf7148c4d4cda9fe83d5ae900214b4b844 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:39 +0100 Subject: gnu: r-crayon: Update to 1.4.2. * gnu/packages/statistics.scm (r-crayon): Update to 1.4.2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e00b09278c..8de9e2ee45 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1562,13 +1562,13 @@ you call it again with the same arguments it returns the pre-computed value.") (define-public r-crayon (package (name "r-crayon") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "crayon" version)) (sha256 (base32 - "1ir963s6zk9l32fw257y54p7898cd7z7yazkn9h6j2cdfhpf9dh8")))) + "0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/crayon") (synopsis "Colored terminal output for R") -- cgit 1.4.1 From cbe234924f79d2f70003be6fdac02c41165d0adf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:39 +0100 Subject: gnu: r-tibble: Update to 3.1.6. * gnu/packages/statistics.scm (r-tibble): Update to 3.1.6. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 8de9e2ee45..6157782470 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1682,14 +1682,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.1.5") + (version "3.1.6") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "1ryv1r3cah1s8dyqdhcb0yl81r384jvgc4d1q9zwsrrsd2x8fqys")))) + "14l2i6ri3v5y0h8g0ahc4kz0pdqsp5yabxk2w8wavss6y44xjcsv")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) -- cgit 1.4.1 From 9482ea9806904c215c927d4a5f9184e9008ee5de Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:40 +0100 Subject: gnu: r-backports: Update to 1.3.0. * gnu/packages/statistics.scm (r-backports): Update to 1.3.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 6157782470..703d485dd4 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2144,14 +2144,14 @@ limited to R.") (define-public r-backports (package (name "r-backports") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "backports" version)) (sha256 (base32 - "1mf2nz78l97lbxyagv55bcxrny51ds8g28h307cfa1g3ayylp0x2")))) + "0bc14x4gyw4gnvm4hrvg5cmmrq449kfza3l14wdgp642ra8iw8sg")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/backports") (synopsis "Reimplementations of functions introduced since R 3.0.0") -- cgit 1.4.1 From d1324bcf561d06517b5311e51a335a7c41c9f4a3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:40 +0100 Subject: gnu: r-git2r: Update to 0.29.0. * gnu/packages/statistics.scm (r-git2r): Update to 0.29.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 703d485dd4..1b1d0eeb1e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2427,13 +2427,13 @@ functions make it easy to control additional request components.") (define-public r-git2r (package (name "r-git2r") - (version "0.28.0") + (version "0.29.0") (source (origin (method url-fetch) (uri (cran-uri "git2r" version)) (sha256 (base32 - "1wjmbs9cmm16pm3g0rmqp7cxxyh95m5lgx4fx5bpgj6j466i8vff")))) + "13nlrhma6kavvhranb43w3003vadfkyrn2f4l3r63iqavj0s3xzq")))) (build-system r-build-system) (inputs `(("libgit2" ,libgit2) -- cgit 1.4.1 From 45ff2f56a0456ef6e7f199d5e3054c1161e49815 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:40 +0100 Subject: gnu: r-readr: Update to 2.1.0. * gnu/packages/statistics.scm (r-readr): Update to 2.1.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 1b1d0eeb1e..5c278a7f68 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2557,13 +2557,13 @@ time-of-day values, based on the @code{difftime} class.") (define-public r-readr (package (name "r-readr") - (version "2.0.2") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "readr" version)) (sha256 (base32 - "05bnvcc55i0xjilfrqx3700mwiz8sgihq1wxlbvvr8nxa7bmxc4q")))) + "03d7y4k9w5vcm7fwlcaw715ff7d953i92jwbp7ynrqcr09kw6zm0")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) -- cgit 1.4.1 From b288e1f446bd30bf3059b9a15ec99434aaeb9ea9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:40 +0100 Subject: gnu: r-rcpparmadillo: Update to 0.10.7.3.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.7.3.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 5c278a7f68..d2a69ec3eb 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2650,13 +2650,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.10.7.0.0") + (version "0.10.7.3.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "1x35xb5yfslsdpaz9msl5p9f7gilnbkhwvq7pbycwasvkp2fma01")))) + "0qk25x8naci76fqcd8jkv8gnba6sj61vkv9yf8498fwff1kvf41p")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs -- cgit 1.4.1 From a385793674606a76f74652d1f5a0c21fc5736ffb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:40 +0100 Subject: gnu: r-snow: Update to 0.4-4. * gnu/packages/statistics.scm (r-snow): Update to 0.4-4. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index d2a69ec3eb..f5772ebf9c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3073,13 +3073,13 @@ multiple breakpoints are allowed.") (define-public r-snow (package (name "r-snow") - (version "0.4-3") + (version "0.4-4") (source (origin (method url-fetch) (uri (cran-uri "snow" version)) (sha256 (base32 - "1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5")))) + "1j8kvf3imxijsqkdjz4i9s7qggfxqrpas46y5wz6za92y937yn44")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/snow") (synopsis "Support for simple parallel computing in R") -- cgit 1.4.1 From 57ad700c2c9933b60f9884157b59070dc78a708c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:40 +0100 Subject: gnu: r-dt: Update to 0.20. * gnu/packages/statistics.scm (r-dt): Update to 0.20. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f5772ebf9c..728e2c2b9d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3498,13 +3498,13 @@ using the multicore functionality of the parallel package.") "datatables-extensions/Select")))) (package (name "r-dt") - (version "0.19") + (version "0.20") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "04rv1rprqlc56hycxpqkbmwmq4wjvmanq2lwxrflmf2s46pbv9ms")) + "17xs18i439p15agyk7z2xyyrwgrpn5pw09kd3jwxn7qhxi4pyvf6")) (modules '((guix build utils))) (snippet '(for-each delete-file -- cgit 1.4.1 From c0f8456709b78c9daeee70a53d3e67c51a941c83 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:41 +0100 Subject: gnu: r-glmnet: Update to 4.1-3. * gnu/packages/statistics.scm (r-glmnet): Update to 4.1-3. [propagated-inputs]: Add r-rcpp and r-rcppeigen. --- gnu/packages/statistics.scm | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 728e2c2b9d..96e235bad7 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3649,13 +3649,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.1-2") + (version "4.1-3") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "1kfd8kfhapx2cxw6qnkbs502c3kya4pd9qmf0mk76cdlq1c2paq6")))) + (base32 "0nij8v44b5dvp1vc843sfkl9ds83n6g687m2p37q1rdn82m3bg34")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran) @@ -3663,6 +3663,8 @@ analysis of large sparse or dense matrices.") (propagated-inputs `(("r-foreach" ,r-foreach) ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) ("r-shape" ,r-shape) ("r-survival" ,r-survival))) (home-page "https://www.jstatsoft.org/article/view/v033i01") -- cgit 1.4.1 From 8d0ab1e0c61a292b9073d2172da3c014b43ff4a7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:41 +0100 Subject: gnu: r-mclust: Update to 5.4.8. * gnu/packages/statistics.scm (r-mclust): Update to 5.4.8. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 96e235bad7..713746ff44 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5104,14 +5104,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "5.4.7") + (version "5.4.8") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "08scl72llpinfijiyx14yqvmx8lma9jvh8h92v9ynnzfr9kadxa5")))) + "0j79a1nidwxl62x8j97k09qjxladp9irw5z1x1q5gyy6zxskvh8i")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran) -- cgit 1.4.1 From 618134a41097ecc00f5b795e1589d20d23c3ec73 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:41 +0100 Subject: gnu: r-robust: Update to 0.6-1. * gnu/packages/statistics.scm (r-robust): Update to 0.6-1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 713746ff44..ef9ac9d18f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5274,14 +5274,14 @@ generally.") (define-public r-robust (package (name "r-robust") - (version "0.5-0.0") + (version "0.6-1") (source (origin (method url-fetch) (uri (cran-uri "robust" version)) (sha256 (base32 - "1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42")))) + "0z8i0qqlsa6vpl457qir3dlsynhjfn2g22436d776vxwyqjx4vs9")))) (build-system r-build-system) (propagated-inputs `(("r-fit-models" ,r-fit-models) -- cgit 1.4.1 From 8e3189dc927608ea46fcb2575129731812d06418 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:41 +0100 Subject: gnu: r-nloptr: Update to 1.2.2.3. * gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.3. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index ef9ac9d18f..7dfd48c0fd 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5520,14 +5520,14 @@ expected shortfall risk are also included.") (define-public r-nloptr (package (name "r-nloptr") - (version "1.2.2.2") + (version "1.2.2.3") (source (origin (method url-fetch) (uri (cran-uri "nloptr" version)) (sha256 (base32 - "0whkilb85k4wixvr3k7rygfw1rcs1fs9h8c18kz4p3y1k9hsj3p8")))) + "1zznk9f2w2g02zqzay21k8xqzfvc6icxfzp6bx2wpd77sm7vf25g")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr) ; for building vignettes -- cgit 1.4.1 From 80c288f7854270c15f430a73bc1a55a5557bdc90 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:41 +0100 Subject: gnu: r-car: Update to 3.0-12. * gnu/packages/statistics.scm (r-car): Update to 3.0-12. [propagated-inputs]: Remove r-rio. --- gnu/packages/statistics.scm | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7dfd48c0fd..106ec10726 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5630,13 +5630,13 @@ Companion to Applied Regression, Third Edition, Sage.") (define-public r-car (package (name "r-car") - (version "3.0-11") + (version "3.0-12") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 - (base32 "0b2l35656bi75hfvnjhzhlnrnbpjn0vv7nvny8gn65gm0rr94b5k")))) + (base32 "00kk8l71508f73kyn21is1mx6kjbrzdq3ls94c5ajhiqmvpsd6dq")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) @@ -5648,8 +5648,7 @@ Companion to Applied Regression, Third Edition, Sage.") ("r-nlme" ,r-nlme) ("r-nnet" ,r-nnet) ("r-pbkrtest" ,r-pbkrtest) - ("r-quantreg" ,r-quantreg) - ("r-rio" ,r-rio))) + ("r-quantreg" ,r-quantreg))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://r-forge.r-project.org/projects/car/") -- cgit 1.4.1 From a61e8f949bf3f0710d1068cb880f37cf2149a1bb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Nov 2021 15:23:42 +0100 Subject: gnu: r-fdrtool: Update to 1.2.17. * gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.17. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 106ec10726..71b36f07c5 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5915,14 +5915,14 @@ easy and fun.") (define-public r-fdrtool (package (name "r-fdrtool") - (version "1.2.16") + (version "1.2.17") (source (origin (method url-fetch) (uri (cran-uri "fdrtool" version)) (sha256 (base32 - "1aap4k1l3a9m43374xq688mqnzkgqx8l021li262r3h1xr4adpp7")))) + "1pf554vb902vavgqc4c0kgghywbgcvr3lkkr414bxngavcd60lil")))) (build-system r-build-system) (home-page "http://strimmerlab.org/software/fdrtool/") (synopsis "Estimation of false discovery rates and higher criticism") -- cgit 1.4.1 From f28f5be11d6849fcd2852913731dd750d18fd123 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 2 Dec 2021 18:31:38 +0100 Subject: gnu: python2-statsmodels: Downgrade to 0.9.0. * gnu/packages/statistics.scm (python2-statsmodels): Downgrade to 0.9.0. --- gnu/packages/statistics.scm | 10 ++++++++++ 1 file changed, 10 insertions(+) (limited to 'gnu/packages/statistics.scm') diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 71b36f07c5..cf7a64ec7a 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1998,6 +1998,16 @@ inference for statistical models.") (define-public python2-statsmodels (let ((stats (package-with-python2 python-statsmodels))) (package/inherit stats + ;; Version 0.11.1 and later does not work with Python 2. It may build + ;; fine but loading modules fails. + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "statsmodels" version)) + (sha256 + (base32 + "0fxs8a7sp4d7jvqlm36yi45i2d28kjfvraf9q8i9jr1chhxgjqb4")))) (propagated-inputs `(("python2-pytz" ,python2-pytz) ("python2-numpy" ,python2-numpy) -- cgit 1.4.1