From 46472ae54546853b3bde1c4e7ed74ec641ca0476 Mon Sep 17 00:00:00 2001 From: zimoun Date: Tue, 4 Jan 2022 23:47:52 +0100 Subject: gnu: Add julia-biosymbols. * gnu/packages/julia-xyz.scm (julia-biosymbols): New variable. Signed-off-by: Efraim Flashner --- gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) (limited to 'gnu/packages') diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index c63bc77a87..f747c72a42 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -387,6 +387,37 @@ many of the other BioJulia packages. This package defines IO, exceptions, and other types or methods used by other BioJulia packages.") (license license:expat)))) +(define-public julia-biosymbols + (package + (name "julia-biosymbols") + ;; Older release for compatibility with julia-biosequences. + (version "4.0.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioJulia/BioSymbols.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1222rwdndi777lai8a6dwrh35i5rgmj75kcrhn8si72sxgz0syjm")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'adjust-tests + (lambda _ + (substitute* "test/runtests.jl" + (("\\@testset \\\"Range.*" all) + (string-append all " return\n")))))))) + (propagated-inputs + (list julia-automa)) + (home-page "https://github.com/BioJulia/BioSymbols.jl") + (synopsis "Primitive types for nucleic acids and amino acids") + (description "This package defines the primitive types for nucleic acids +and amino acids that are used ny otherBioJulia packages.") + (license license:expat))) + (define-public julia-blockarrays (package (name "julia-blockarrays") -- cgit 1.4.1