From 5baa37b56cbde873b8dedca343dd9c8d8c080528 Mon Sep 17 00:00:00 2001 From: Mădălin Ionel Patrașcu Date: Thu, 28 Jul 2022 23:38:58 +0200 Subject: gnu: Add r-phyclust. * gnu/packages/cran.scm (r-phyclust): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/cran.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) (limited to 'gnu') diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a677360700..fc7fd0467e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11699,6 +11699,31 @@ supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a singular or ill-conditioned Jacobian.") (license license:gpl2+))) +(define-public r-phyclust + (package + (name "r-phyclust") + (version "0.1-30") + (source (origin + (method url-fetch) + (uri (cran-uri "phyclust" version)) + (sha256 + (base32 + "0fy9q95vmlm9idpax7alhpfwn30gflnc9md72g91jypyxkx5nr7p")))) + (properties `((upstream-name . "phyclust"))) + (build-system r-build-system) + (propagated-inputs (list r-ape)) + (home-page "https://snoweye.github.io/phyclust/") + (synopsis "Studying phyloclustering and exploring DNA sequence data") + (description + "@dfn{Phylogenetic clustering} (phyloclustering) is an evolutionary continuous +time Markov Chain model-based approach to identify population structure from +molecular data without assuming linkage equilibrium. The package @code{phyclust} +provides a convenient implementation of phyloclustering for DNA and SNP data, +capable of clustering individuals into subpopulations and identifying molecular +sequences representative of those subpopulations. It is designed in @code{C} for +performance and interfaced with @code{R} for visualization.") + (license license:gpl2+))) + (define-public r-physicalactivity (package (name "r-physicalactivity") -- cgit 1.4.1