From 7694acebd18d9b32fd01b70819c1e79de05b4f52 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 4 May 2021 10:11:34 +0200 Subject: gnu: r-summarizedexperiment: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here... * gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 34 ---------------------------------- 2 files changed, 34 insertions(+), 34 deletions(-) (limited to 'gnu') diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 79aaf92124..9b49c6ec43 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2395,6 +2395,40 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-summarizedexperiment + (package + (name "r-summarizedexperiment") + (version "1.20.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "SummarizedExperiment" version)) + (sha256 + (base32 + "04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps")))) + (properties + `((upstream-name . "SummarizedExperiment"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-delayedarray" ,r-delayedarray) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-matrix" ,r-matrix) + ("r-matrixgenerics" ,r-matrixgenerics) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/SummarizedExperiment") + (synopsis "Container for representing genomic ranges by sample") + (description + "The SummarizedExperiment container contains one or more assays, each +represented by a matrix-like object of numeric or other mode. The rows +typically represent genomic ranges of interest and the columns represent +samples.") + (license license:artistic2.0))) + (define-public r-systempiper (package (name "r-systempiper") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index eda7416fb2..de76e67f57 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7838,40 +7838,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-summarizedexperiment - (package - (name "r-summarizedexperiment") - (version "1.20.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "SummarizedExperiment" version)) - (sha256 - (base32 - "04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps")))) - (properties - `((upstream-name . "SummarizedExperiment"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-delayedarray" ,r-delayedarray) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-matrix" ,r-matrix) - ("r-matrixgenerics" ,r-matrixgenerics) - ("r-s4vectors" ,r-s4vectors))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/SummarizedExperiment") - (synopsis "Container for representing genomic ranges by sample") - (description - "The SummarizedExperiment container contains one or more assays, each -represented by a matrix-like object of numeric or other mode. The rows -typically represent genomic ranges of interest and the columns represent -samples.") - (license license:artistic2.0))) - (define-public r-genomicalignments (package (name "r-genomicalignments") -- cgit 1.4.1