From 9c19db8c1d848412697b0b47ff6e878248de1944 Mon Sep 17 00:00:00 2001
From: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
Date: Sun, 17 Apr 2022 17:10:46 +0200
Subject: gnu: Add r-adductomicsr.

* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f0462a5368..2db0ab3752 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1899,6 +1899,51 @@ but which also provides utilities which may be useful for other platforms.")
     ;; GPLv3.
     (license license:gpl3)))
 
+(define-public r-adductomicsr
+  (package
+    (name "r-adductomicsr")
+    (version "1.10.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "adductomicsR" version))
+              (sha256
+               (base32
+                "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"))))
+    (properties `((upstream-name . "adductomicsR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-adductdata
+           r-ade4
+           r-annotationhub
+           r-bootstrap
+           r-data-table
+           r-dosnow
+           r-dplyr
+           r-dt
+           r-experimenthub
+           r-fastcluster
+           r-foreach
+           r-fpc
+           r-mzr
+           r-orgmassspecr
+           r-pastecs
+           r-pracma
+           r-rcppeigen
+           r-reshape2
+           r-rvest
+           r-smoother
+           r-zoo))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/adductomicsR")
+    (synopsis "Processing of adductomic mass spectral datasets")
+    (description
+     "This package @code{adductomicsR} processes data generated by the
+@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted
+peptides from spectra that has been corrected for mass drift and retention
+time drift and quantifies level mass spectral peaks from @dfn{first stage of
+mass spectrometry} (MS1) data.")
+    (license license:artistic2.0)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")
-- 
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