From 8f417ed28061c11c7ff2649cfa15e35b00ef9a0b Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Sun, 13 Oct 2019 23:12:44 +0200
Subject: gnu: commencement: Further optimize the package object graph.

For a package like:

  (define-public xxx
    (package
      (inherit (@ (gnu packages base) coreutils))
      (name "xxx")
      (inputs (@ (gnu packages commencement) %final-inputs))
      (native-inputs '())
      (propagated-inputs '())
      (arguments '(#:implicit-inputs? #f))))

this reduces the package object graph from 176 nodes (1852 edges) to 113
nodes (1114 edges).

The number of 'add-data-to-store' calls in "guix build coreutils -nd"
drops from 2045 to 1301, and the number of memoization tables drops from
102 to 40.

"guix build libreoffice -nd" goes from 2.40s to 2.27s.

* gnu/packages/commencement.scm (with-boot4): New variable.
(guile-final, glibc-utf8-locales-final): Use it.
(with-boot4, with-boot5): New variable.
(gnu-make-final): Rewrite to avoid 'package-with-explicit-inputs'.
(coreutils-final): Use 'with-boot5' instead of
'package-with-explicit-inputs'.
(grep-final): Likewise.
(with-boot6): New variable.
(sed-final, %final-inputs): Use it.
---
 gnu/packages/commencement.scm | 74 +++++++++++++++++++++++--------------------
 1 file changed, 40 insertions(+), 34 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/commencement.scm b/gnu/packages/commencement.scm
index d113acaba8..fd976e0c2f 100644
--- a/gnu/packages/commencement.scm
+++ b/gnu/packages/commencement.scm
@@ -2365,14 +2365,14 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
   `(("bash" ,bash-final)
     ,@(alist-delete "bash" (%boot3-inputs))))
 
+(define with-boot4
+  (package-with-explicit-inputs %boot4-inputs %bootstrap-guile))
+
 (define-public guile-final
   ;; This package must be public because other modules refer to it.  However,
   ;; mark it as hidden so that 'fold-packages' ignores it.
-  (package-with-bootstrap-guile
-   (package-with-explicit-inputs (hidden-package guile-2.2/fixed)
-                                 %boot4-inputs
-                                 (current-source-location)
-                                 #:guile %bootstrap-guile)))
+  (with-boot4 (hidden-package
+               (package-with-bootstrap-guile guile-2.2/fixed))))
 
 (define glibc-utf8-locales-final
   ;; Now that we have GUILE-FINAL, build the UTF-8 locales.  They are needed
@@ -2384,10 +2384,7 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
     (inherit glibc-utf8-locales)
     (native-inputs
      `(("glibc" ,glibc-final)
-       ("gzip"
-        ,(package-with-explicit-inputs gzip %boot4-inputs
-                                       (current-source-location)
-                                       #:guile %bootstrap-guile))))))
+       ("gzip" ,(with-boot4 gzip))))))
 
 (define-public ld-wrapper
   ;; The final 'ld' wrapper, which uses the final Guile and Binutils.
@@ -2403,35 +2400,45 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
   `(("locales" ,glibc-utf8-locales-final)
     ,@(%boot4-inputs)))
 
+(define with-boot5
+  (package-with-explicit-inputs %boot5-inputs))
+
 (define gnu-make-final
   ;; The final GNU Make, which uses the final Guile.
-  (package-with-explicit-inputs (package-with-bootstrap-guile gnu-make)
-                                (lambda _
-                                  `(("guile" ,guile-final)
-                                    ,@(%boot5-inputs)))
-                                (current-source-location)))
+  ;; FIXME: This is a mistake: we shouldn't be propagating GUILE-FINAL to
+  ;; PKG-CONFIG.
+  ;; TODO: Fix that on the next rebuild cycle.
+  (let ((pkg-config (package
+                      (inherit pkg-config)
+                      (inputs `(("guile" ,guile-final)
+                                ,@(%boot5-inputs)))
+                      (arguments
+                       `(#:implicit-inputs? #f
+                         ,@(package-arguments pkg-config))))))
+    (package
+      (inherit (package-with-bootstrap-guile gnu-make))
+      (inputs `(("guile" ,guile-final)
+                ,@(%boot5-inputs)))
+      (native-inputs `(("pkg-config" ,pkg-config)))
+      (arguments
+       `(#:implicit-inputs? #f
+         ,@(package-arguments gnu-make))))))
+
 
 (define coreutils-final
   ;; The final Coreutils.  Treat them specially because some packages, such as
   ;; Findutils, keep a reference to the Coreutils they were built with.
-  (package-with-explicit-inputs (package-with-bootstrap-guile coreutils)
-                                %boot5-inputs
-                                (current-source-location)
-
-                                ;; Use the final Guile, linked against the
-                                ;; final libc with working iconv, so that
-                                ;; 'substitute*' works well when touching
-                                ;; test files in Gettext.
-                                #:guile guile-final))
+  (with-boot5 (package-with-bootstrap-guile coreutils)
+              ;; Use the final Guile, linked against the
+              ;; final libc with working iconv, so that
+              ;; 'substitute*' works well when touching
+              ;; test files in Gettext.
+              ))
 
 (define grep-final
   ;; The final grep.  Gzip holds a reference to it (via zgrep), so it must be
   ;; built before gzip.
-  (let ((grep (package-with-explicit-inputs
-               (package-with-bootstrap-guile grep)
-               %boot5-inputs
-               (current-source-location)
-               #:guile guile-final)))
+  (let ((grep (with-boot5 (package-with-bootstrap-guile grep))))
     (package/inherit grep
                      (inputs (alist-delete "pcre" (package-inputs grep)))
                      (native-inputs `(("perl" ,perl-boot0))))))
@@ -2442,12 +2449,12 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
     ("grep" ,grep-final)
     ,@(%boot5-inputs)))
 
+(define with-boot6
+  (package-with-explicit-inputs %boot6-inputs))
+
 (define sed-final
   ;; The final sed.
-  (let ((sed (package-with-explicit-inputs (package-with-bootstrap-guile sed)
-                                           %boot6-inputs
-                                           (current-source-location)
-                                           #:guile guile-final)))
+  (let ((sed (with-boot6 (package-with-bootstrap-guile sed))))
     (package/inherit sed (native-inputs `(("perl" ,perl-boot0))))))
 
 (define-public %final-inputs
@@ -2455,8 +2462,7 @@ exec ~a/bin/~a-~a -B~a/lib -Wl,-dynamic-linker -Wl,~a/~a \"$@\"~%"
   ;; still use 'package-with-bootstrap-guile' so that the bootstrap tools are
   ;; used for origins that have patches, thereby avoiding circular
   ;; dependencies.
-  (let ((finalize (compose (cut package-with-explicit-inputs <> %boot6-inputs
-                                (current-source-location))
+  (let ((finalize (compose with-boot6
                            package-with-bootstrap-guile)))
     `(,@(map (match-lambda
                ((name package)
-- 
cgit 1.4.1


From efa8fddabedbfcec85f19a6d8b431f0adabfe537 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Sun, 13 Oct 2019 23:36:39 +0200
Subject: gnu: commencement: Use 'package-with-explicit-inputs' for Hurd
 packages.

* gnu/packages/commencement.scm (with-boot0): New procedure.
(gnumach-headers-boot0, mig-boot0)
(hurd-headers-boot0, hurd-minimal-boot0)
(hurd-core-headers-boot0): Use it instead of 'package-with-explicit-inputs'.
---
 gnu/packages/commencement.scm | 45 +++++++++++++++++--------------------------
 1 file changed, 18 insertions(+), 27 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/commencement.scm b/gnu/packages/commencement.scm
index fd976e0c2f..54746151ce 100644
--- a/gnu/packages/commencement.scm
+++ b/gnu/packages/commencement.scm
@@ -1798,15 +1798,16 @@ exec " gcc "/bin/" program
          ("bison" ,bison-boot0)
          ,@(%boot0-inputs))))))
 
+(define with-boot0
+  (package-with-explicit-inputs %boot0-inputs
+                                %bootstrap-guile))
+
 (define gnumach-headers-boot0
-  (package-with-bootstrap-guile
-   (package-with-explicit-inputs gnumach-headers
-                                 (%boot0-inputs)
-                                 (current-source-location)
-                                 #:guile %bootstrap-guile)))
+  (with-boot0 (package-with-bootstrap-guile gnumach-headers)))
 
 (define mig-boot0
-  (let* ((mig (package (inherit mig)
+  (let* ((mig (package
+                 (inherit (package-with-bootstrap-guile mig))
                  (native-inputs `(("bison" ,bison-boot0)
                                   ("flex" ,flex-boot0)))
                  (inputs `(("flex" ,flex-boot0)))
@@ -1814,42 +1815,32 @@ exec " gcc "/bin/" program
                   `(#:configure-flags
                     `(,(string-append "LDFLAGS=-Wl,-rpath="
                                       (assoc-ref %build-inputs "flex") "/lib/")))))))
-    (package-with-bootstrap-guile
-     (package-with-explicit-inputs mig (%boot0-inputs)
-                                   (current-source-location)
-                                   #:guile %bootstrap-guile))))
+    (with-boot0 mig)))
 
 (define hurd-headers-boot0
   (let ((hurd-headers (package (inherit hurd-headers)
                         (native-inputs `(("mig" ,mig-boot0)))
                         (inputs '()))))
-    (package-with-bootstrap-guile
-     (package-with-explicit-inputs hurd-headers (%boot0-inputs)
-                                   (current-source-location)
-                                   #:guile %bootstrap-guile))))
+    (with-boot0 (package-with-bootstrap-guile hurd-headers))))
 
 (define hurd-minimal-boot0
   (let ((hurd-minimal (package (inherit hurd-minimal)
                         (native-inputs `(("mig" ,mig-boot0)))
                         (inputs '()))))
-    (package-with-bootstrap-guile
-     (package-with-explicit-inputs hurd-minimal (%boot0-inputs)
-                                   (current-source-location)
-                                   #:guile %bootstrap-guile))))
+    (with-boot0 (package-with-bootstrap-guile hurd-minimal))))
 
 (define hurd-core-headers-boot0
   (mlambda ()
     "Return the Hurd and Mach headers as well as initial Hurd libraries for
 the bootstrap environment."
-    (package-with-bootstrap-guile
-     (package (inherit hurd-core-headers)
-              (arguments `(#:guile ,%bootstrap-guile
-                           ,@(package-arguments hurd-core-headers)))
-              (inputs
-               `(("gnumach-headers" ,gnumach-headers-boot0)
-                 ("hurd-headers" ,hurd-headers-boot0)
-                 ("hurd-minimal" ,hurd-minimal-boot0)
-                 ,@(%boot0-inputs)))))))
+    (package (inherit (package-with-bootstrap-guile hurd-core-headers))
+             (arguments `(#:guile ,%bootstrap-guile
+                          ,@(package-arguments hurd-core-headers)))
+             (inputs
+              `(("gnumach-headers" ,gnumach-headers-boot0)
+                ("hurd-headers" ,hurd-headers-boot0)
+                ("hurd-minimal" ,hurd-minimal-boot0)
+                ,@(%boot0-inputs))))))
 
 (define* (kernel-headers-boot0 #:optional (system (%current-system)))
   (match system
-- 
cgit 1.4.1


From ff73bbf410316b23dd46efb3c638c9f561b7dec0 Mon Sep 17 00:00:00 2001
From: Kyle Meyer <kyle@kyleam.com>
Date: Thu, 10 Oct 2019 17:49:25 -0400
Subject: gnu: git-annex: Update to 7.20191009.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20191009.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/haskell-apps.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/haskell-apps.scm b/gnu/packages/haskell-apps.scm
index e09285d63a..13d228b856 100644
--- a/gnu/packages/haskell-apps.scm
+++ b/gnu/packages/haskell-apps.scm
@@ -245,7 +245,7 @@ unique algebra of patches called @url{http://darcs.net/Theory,Patchtheory}.
 (define-public git-annex
   (package
     (name "git-annex")
-    (version "7.20190912")
+    (version "7.20191009")
     (source
      (origin
        (method url-fetch)
@@ -253,7 +253,7 @@ unique algebra of patches called @url{http://darcs.net/Theory,Patchtheory}.
                            "git-annex/git-annex-" version ".tar.gz"))
        (sha256
         (base32
-         "1a3jvl5cx32v78s3015i10cx00jprm1391rpww4mzkk1vskzn9cv"))))
+         "10ycvjl9b3aa81zdz239ngjbbambfjrzds1a23wdlbjkn12nsg4g"))))
     (build-system haskell-build-system)
     (arguments
      `(#:configure-flags
-- 
cgit 1.4.1


From 1c463524c8325c434a437f358e71cd7191dce267 Mon Sep 17 00:00:00 2001
From: David Wilson <david@daviwil.com>
Date: Thu, 10 Oct 2019 22:06:43 -0700
Subject: gnu: Add playerctl.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/music.scm (playerctl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/music.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 66ff861dc3..250f3136bb 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -23,6 +23,7 @@
 ;;; Copyright © 2019 Timotej Lazar <timotej.lazar@araneo.si>
 ;;; Copyright © 2019 Jakob L. Kreuze <zerodaysfordays@sdf.lonestar.org>
 ;;; Copyright © 2019 raingloom <raingloom@protonmail.com>
+;;; Copyright © 2019 David Wilson <david@daviwil.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -4677,3 +4678,33 @@ easier to perform.  Features include:
 sqlite.  It is constructed to be fast, light, and simultaneously tries to be
 complete without obstructing your daily work.")
     (license license:gpl3+)))
+
+(define-public playerctl
+  (package
+    (name "playerctl")
+    (version "2.0.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/altdesktop/playerctl.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1f3njnpd52djx3dmhh9a8p5a67f0jmr1gbk98icflr2q91149gjz"))))
+    (build-system meson-build-system)
+    (arguments
+     `(#:configure-flags '("-Dintrospection=false" "-Dgtk-doc=false")))
+    (inputs `(("python-pygobject" ,python-pygobject)))
+    (native-inputs
+     `(("glib:bin" ,glib "bin")
+       ("pkg-config" ,pkg-config)))
+    (synopsis "Control MPRIS-supporting media player applications")
+    (description
+     "Playerctl is a command-line utility and library for controlling media
+players that implement the MPRIS D-Bus Interface Specification.  Playerctl
+makes it easy to bind player actions, such as play and pause, to media keys.
+You can also get metadata about the playing track such as the artist and title
+for integration into status line generators or other command-line tools.")
+    (home-page "https://github.com/altdesktop/playerctl")
+    (license license:lgpl3+)))
-- 
cgit 1.4.1


From a201b0973eb5e7679b88ef7ef56783b6a5316707 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 14:56:45 +0200
Subject: gnu: starman: Update to 0.4015.

* gnu/packages/web.scm (starman): Update to 0.4015.
---
 gnu/packages/web.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 728fb6046c..f84214b8be 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -464,15 +464,14 @@ servers that may need it).")
 (define-public starman
   (package
     (name "starman")
-    (version "0.4014")
+    (version "0.4015")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://cpan/authors/id/M/MI/MIYAGAWA/"
                            "Starman-" version ".tar.gz"))
        (sha256
-        (base32
-         "1sbb5rb3vs82rlh1fjkgkcmj5pj62b4y9si4ihh45sl9m8c2qxx5"))))
+        (base32 "1y1kn4929k299fbf6sw9lxcsdlq9fvq777p6yrzk591rr9xhkx8h"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-libwww" ,perl-libwww)
-- 
cgit 1.4.1


From ca49db2735d28aae737430532baa4277a1ab9fd7 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:34:41 +0200
Subject: gnu: emacs-debbugs: Update to 0.20.

* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.20.
---
 gnu/packages/emacs-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 4f0f262f93..91c52ad9ab 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -3354,14 +3354,14 @@ source code using IPython.")
 (define-public emacs-debbugs
   (package
     (name "emacs-debbugs")
-    (version "0.19")
+    (version "0.20")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://elpa.gnu.org/packages/debbugs-"
                                   version ".tar"))
               (sha256
                (base32
-                "0cpby8f088cqb5mpd756a2mb706x763k15cg2xdmmsxl415k3yw4"))))
+                "03mmb1zvbqlsznl5agq8k3xrlcz310vnsa2zn0y8myanm4ra51zm"))))
     (build-system emacs-build-system)
     (arguments '(#:include '("\\.el$" "\\.wsdl$" "\\.info$")))
     (propagated-inputs
-- 
cgit 1.4.1


From 5aa51871283bfcccb2800796e25f55643e75f733 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:34:50 +0200
Subject: gnu: emacs-load-relative: Update to 1.3.1.

* gnu/packages/emacs-xyz.scm (emacs-load-relative): Update to 1.3.1.
---
 gnu/packages/emacs-xyz.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 91c52ad9ab..77a12c3862 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -5026,15 +5026,14 @@ test tags.  It supports both interactive and non-interactive use.")
 (define-public emacs-load-relative
   (package
     (name "emacs-load-relative")
-    (version "1.3")
+    (version "1.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://elpa.gnu.org/packages/load-relative-"
                            version ".el"))
        (sha256
-        (base32
-         "1hfxb2436jdsi9wfmsv47lkkpa5galjf5q81bqabbsv79rv59dps"))))
+        (base32 "1m37scr82lqqy954fchjxrmdh4lngrl4d1yzxhp3yfjhsydizhrj"))))
     (build-system emacs-build-system)
     (home-page "http://github.com/rocky/emacs-load-relative")
     (synopsis "Emacs Lisp relative file loading related functions")
-- 
cgit 1.4.1


From 80fd37978480e9ea84d5b4a8fd3840df4f154055 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:35:21 +0200
Subject: gnu: emacs-csv-mode: Update to 1.9.

* gnu/packages/emacs-xyz.scm (emacs-csv-mode): Update to 1.9.
---
 gnu/packages/emacs-xyz.scm | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 77a12c3862..8d783c9b18 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -10502,20 +10502,17 @@ let users kill or mark things easily.")
 (define-public emacs-csv-mode
   (package
     (name "emacs-csv-mode")
-    (version "1.7")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "http://elpa.gnu.org/packages/csv-mode-"
                            version ".el"))
        (sha256
-        (base32
-         "0r4bip0w3h55i8h6sxh06czf294mrhavybz0zypzrjw91m1bi7z6"))))
+        (base32 "0sdnyi9in904k49yy5imapypnmk75lv14k9c1yyjhjpalvvh6br1"))))
     (build-system emacs-build-system)
-    (home-page
-     "http://elpa.gnu.org/packages/csv-mode.html")
-    (synopsis
-     "Major mode for editing comma/char separated values")
+    (home-page "http://elpa.gnu.org/packages/csv-mode.html")
+    (synopsis "Major mode for editing comma/char separated values")
     (description
      "This Emacs package implements CSV mode, a major mode for editing records
 in a generalized CSV (character-separated values) format.")
-- 
cgit 1.4.1


From d0b9fc9a892a01da5fc8cf4f66c32e72121f4554 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:36:04 +0200
Subject: gnu: emacs-csv-mode: Use HTTPS.

* gnu/packages/emacs-xyz.scm (emacs-csv-mode)[source, home-page]: Use HTTPS.
---
 gnu/packages/emacs-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 8d783c9b18..beba840cc8 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -10506,12 +10506,12 @@ let users kill or mark things easily.")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "http://elpa.gnu.org/packages/csv-mode-"
+       (uri (string-append "https://elpa.gnu.org/packages/csv-mode-"
                            version ".el"))
        (sha256
         (base32 "0sdnyi9in904k49yy5imapypnmk75lv14k9c1yyjhjpalvvh6br1"))))
     (build-system emacs-build-system)
-    (home-page "http://elpa.gnu.org/packages/csv-mode.html")
+    (home-page "https://elpa.gnu.org/packages/csv-mode.html")
     (synopsis "Major mode for editing comma/char separated values")
     (description
      "This Emacs package implements CSV mode, a major mode for editing records
-- 
cgit 1.4.1


From d3dfeaa8fe5cbdcf91db86d87a442af2ddbf4f5a Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:36:15 +0200
Subject: gnu: emacs-let-alist: Update to 1.0.6.

* gnu/packages/emacs-xyz.scm (emacs-let-alist): Update to 1.0.6.
---
 gnu/packages/emacs-xyz.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index beba840cc8..61234e0e05 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -12583,15 +12583,14 @@ for operating over the contents of Emacs buffers.")
 (define-public emacs-let-alist
   (package
     (name "emacs-let-alist")
-    (version "1.0.5")
+    (version "1.0.6")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
              "https://elpa.gnu.org/packages/let-alist-" version ".el"))
        (sha256
-        (base32
-         "0r7b9jni50la1m79kklml11syg8d2fmdlr83pv005sv1wh02jszw"))))
+        (base32 "0szj7vnjzz4zci5fvz7xqgcpi4pzdyyf4qi2s8xar2hi7v3yaawr"))))
     (build-system emacs-build-system)
     (home-page "https://elpa.gnu.org/packages/let-alist.html")
     (synopsis "Easily let-bind values of an assoc-list by their names")
-- 
cgit 1.4.1


From fc319fde1a52562f5903d11b2ce380cfa65eb374 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:36:23 +0200
Subject: gnu: emacs-darkroom: Update to 0.2.

* gnu/packages/emacs-xyz.scm (emacs-darkroom): Update to 0.2.
---
 gnu/packages/emacs-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 61234e0e05..4aea1f0163 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -13547,14 +13547,14 @@ It s customizable: it's easy to add or redefine what exactly consitutes a
 (define-public emacs-darkroom
   (package
     (name "emacs-darkroom")
-    (version "0.1")
+    (version "0.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://elpa.gnu.org/packages/darkroom-"
                                   version ".el"))
               (sha256
                (base32
-                "0fif8fm1h7x7g16949shfnaik5f5488clsvkf8bi5izpqp3vi6ak"))))
+                "1a528brhz4vckhp77n2c1phkyqdliykpj9kzk3f834f4rwnb5mp0"))))
     (build-system emacs-build-system)
     (home-page "https://elpa.gnu.org/packages/darkroom.html")
     (synopsis "Remove visual distractions and focus on writing")
-- 
cgit 1.4.1


From d915065bac5eee69f5ddd767dc9abd3172ec6d6c Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:36:40 +0200
Subject: gnu: emacs-nhexl-mode: Update to 1.3.

* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode): Update to 1.3.
---
 gnu/packages/emacs-xyz.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 4aea1f0163..ac7d2e37e9 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -18327,7 +18327,7 @@ as:
 (define-public emacs-nhexl-mode
   (package
     (name "emacs-nhexl-mode")
-    (version "1.2")
+    (version "1.3")
     (source
      (origin
        (method url-fetch)
@@ -18335,8 +18335,7 @@ as:
              "https://elpa.gnu.org/packages/nhexl-mode-"
              version ".el"))
        (sha256
-        (base32
-         "031h22p564qdvr9khs05qcba06pmsk68cr7zyc7c04hfr3y3ziaf"))))
+        (base32 "1fcy4ybr12dvswmzaqkv4798snb1x1y7ldxwrsgjv5sx7bb5j60z"))))
     (build-system emacs-build-system)
     (home-page "http://elpa.gnu.org/packages/nhexl-mode.html")
     (synopsis "Minor mode to edit files via hex-dump format")
-- 
cgit 1.4.1


From 9cdf9468dd2b9d504c2a3e33f1d8e527439b3700 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Sun, 13 Oct 2019 15:37:04 +0200
Subject: gnu: emacs-nhexl-mode: Use HTTPS home page.

* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode)[home-page]: Use HTTPS.
---
 gnu/packages/emacs-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index ac7d2e37e9..1f32280daa 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -18337,7 +18337,7 @@ as:
        (sha256
         (base32 "1fcy4ybr12dvswmzaqkv4798snb1x1y7ldxwrsgjv5sx7bb5j60z"))))
     (build-system emacs-build-system)
-    (home-page "http://elpa.gnu.org/packages/nhexl-mode.html")
+    (home-page "https://elpa.gnu.org/packages/nhexl-mode.html")
     (synopsis "Minor mode to edit files via hex-dump format")
     (description
      "This package implements NHexl mode, a minor mode for editing files
-- 
cgit 1.4.1


From 509551c2a8980acbf79973da9d6b3387b5e451e4 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 00:30:10 +0200
Subject: gnu: xwininfo: Update to 1.1.5.

* gnu/packages/xorg.scm (xwininfo): Update to 1.1.5.
---
 gnu/packages/xorg.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 3bc83a6175..0567e4dd92 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -4400,7 +4400,7 @@ dump and twice whenthe dump is completed.")
 (define-public xwininfo
   (package
     (name "xwininfo")
-    (version "1.1.4")
+    (version "1.1.5")
     (source
       (origin
         (method url-fetch)
@@ -4410,7 +4410,7 @@ dump and twice whenthe dump is completed.")
                ".tar.bz2"))
         (sha256
           (base32
-            "00avrpw4h5mr1klp41lv2j4dmq465v6l5kb5bhm4k5ml8sm9i543"))))
+            "03h8clirhw5ki1xxp18xbf5vynm7r0dwspsgfin6cxn4vx0m8h3s"))))
     (build-system gnu-build-system)
     (inputs
       `(("libx11" ,libx11)
-- 
cgit 1.4.1


From 217f22d16ab8ba333f84d6f24bf687c46a6b8390 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 00:40:15 +0200
Subject: gnu: xwd: Fix typo in description.

* gnu/packages/xorg.scm (xwd)[description]: Fix typo.
---
 gnu/packages/xorg.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 0567e4dd92..c670b3fe1d 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -4393,7 +4393,7 @@ file.  This file can then be read by various other X utilities for
 redisplay, printing, editing, formatting, archiving, image processing,
 etc.  The target window is selected by clicking the pointer in the
 desired window.  The keyboard bell is rung once at the beginning of the
-dump and twice whenthe dump is completed.")
+dump and twice when the dump is completed.")
     (license license:x11)))
 
 
-- 
cgit 1.4.1


From 136e3b392b768d767be752bb736c7c388fb7196e Mon Sep 17 00:00:00 2001
From: Eric Bavier <bavier@member.fsf.org>
Date: Sun, 13 Oct 2019 22:11:28 -0500
Subject: gnu: stress-make: Fix build and update.

* gnu/packages/debug.scm (stress-make)[version]: Update to latest upstream
commit.  Bump revision.  Use 'git-version'.
[source]: Update url.  Use 'git-file-name'.
[home-page]: Update url likewise.
[arguments]: Add 'setup-go' phase.
[license]: Update license file name.
---
 gnu/packages/debug.scm | 22 +++++++++++++---------
 1 file changed, 13 insertions(+), 9 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/debug.scm b/gnu/packages/debug.scm
index 82631deef6..3372fc89e1 100644
--- a/gnu/packages/debug.scm
+++ b/gnu/packages/debug.scm
@@ -264,21 +264,21 @@ down the road.")
       (license asl2.0))))
 
 (define-public stress-make
-  (let ((commit "506e6cfd98d165f22bee91c408b7c20117a682c4")
-        (revision "0"))                 ;No official source distribution
+  (let ((commit "9e92dff8f0157f012aaf31de5b8b8112ad720100")
+        (revision "1"))                 ;No official source distribution
     (package
       (name "stress-make")
-      (version (string-append "1.0-" revision "." (string-take commit 7)))
+      (version (git-version "1.0" revision commit))
       (source
        (origin
          (method git-fetch)
          (uri (git-reference
-               (url "https://github.com/losalamos/stress-make.git")
+               (url "https://github.com/lanl/stress-make.git")
                (commit commit)))
-         (file-name (string-append name "-" version "-checkout"))
+         (file-name (git-file-name name version))
          (sha256
           (base32
-           "1j330yqhc7plwin04qxbh8afpg5nfnw1xvnmh8rk6mmqg9w6ik70"))))
+           "1z1yiwnqyzv3v6152fnjbfh2lr8q8fi5xxfdclnr8l8sd4c1rasp"))))
       (build-system gnu-build-system)
       (native-inputs
        `(("autoconf" ,autoconf)
@@ -308,8 +308,12 @@ down the road.")
                             (which "sh"))))))
              (add-before 'configure 'repack-make
                (lambda _
-                 (invoke "tar" "cJf" "./make.tar.xz" ,make-dir)))))))
-      (home-page "https://github.com/losalamos/stress-make")
+                 (invoke "tar" "cJf" "./make.tar.xz" ,make-dir)))
+             (add-before 'build 'setup-go
+               ;; The Go cache is required starting in Go 1.12, and it needs
+               ;; to be writable.
+               (lambda _ (setenv "GOCACHE" "/tmp/go-cache") #t))))))
+      (home-page "https://github.com/lanl/stress-make")
       (synopsis "Expose race conditions in Makefiles")
       (description
        "Stress Make is a customized GNU Make that explicitly manages the order
@@ -320,7 +324,7 @@ Stress Make, then it is likely that the @code{Makefile} contains no race
 conditions.")
       ;; stress-make wrapper is under BSD-3-modifications-must-be-indicated,
       ;; and patched GNU Make is under its own license.
-      (license (list (non-copyleft "COPYING.md")
+      (license (list (non-copyleft "LICENSE.md")
                      (package-license gnu-make))))))
 
 (define-public zzuf
-- 
cgit 1.4.1


From bd04fe878627a14533d908ccdf5b906050d6e0a4 Mon Sep 17 00:00:00 2001
From: Eric Bavier <bavier@member.fsf.org>
Date: Sun, 13 Oct 2019 22:54:12 -0500
Subject: gnu: HandBrake: Update to 1.2.2.

* gnu/packages/video.scm (handbrake): Update to 1.2.2.
---
 gnu/packages/video.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index dcd586c97a..8f4019b9c0 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -2637,14 +2637,14 @@ supported players in addition to this package.")
 (define-public handbrake
   (package
     (name "handbrake")
-    (version "1.2.0")
+    (version "1.2.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://download.handbrake.fr/releases/"
                                   version "/HandBrake-" version "-source.tar.bz2"))
               (sha256
                (base32
-                "03clkknaq3mz84p85cvr21gsy9b8vv2g4vvyfz44hz8la253jfqi"))
+                "0k2yaqy7zi06k8mkp9az2mn9dlgj3a1339vacakfh2nn2zsics6z"))
               (modules '((guix build utils)))
               (snippet
                ;; Remove "contrib" and source not necessary for
-- 
cgit 1.4.1


From 34d2367dc13e0fd85f4a088d98e563428b9e2e8d Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Sun, 13 Oct 2019 14:24:31 -0700
Subject: gnu: emacs-ivy-rich: Update to 0.1.4-2.7a667b1.

* gnu/packages/emacs-xyz.scm (emacs-ivy-rich): Update to 0.1.4-2.7a667b1.
---
 gnu/packages/emacs-xyz.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 1f32280daa..f6a88f6915 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -5313,12 +5313,11 @@ use it, call @code{M-x ivy-yasnippet} (but make sure you have enabled
 (define-public emacs-ivy-rich
   ;; The latest release version has a small mistake that has since been fixed,
   ;; so we use a more recent commit.
-  (let ((commit "f6bfa293c6df0b43cc411876b665816ec3f03d08")
-        (version "0.1.4")
-        (revision "1"))
+  (let ((commit "7a667b135983a1f3ad33d6db8514638e2a3bdfb3")
+        (revision "2"))
     (package
       (name "emacs-ivy-rich")
-      (version (git-version version revision commit))
+      (version (git-version "0.1.4" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -5327,7 +5326,7 @@ use it, call @code{M-x ivy-yasnippet} (but make sure you have enabled
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "1s8nwwb1z6lkc58g02pi8w99qms948k8d02lw8k8cq47dw87i219"))))
+          (base32 "1v5j6pak2j1wjw19y7rx9rhxif0bj2h47xyl2knfcl6fi4qiqm9y"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-ivy" ,emacs-ivy)))
-- 
cgit 1.4.1


From 92f92a0fc8b206a343287ab4790e6fce38e55953 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Sun, 13 Oct 2019 16:03:02 -0700
Subject: gnu: emacs-unpackaged-el: Update to 0-3.746801a.

* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el): Update to 0-3.746801a.
---
 gnu/packages/emacs-xyz.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index f6a88f6915..bbafd548b1 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -652,8 +652,8 @@ from within Emacs.")
     (license license:gpl3+)))
 
 (define-public emacs-unpackaged-el
-  (let ((commit "c0d58cf81e531b2b6fa1bd5dd612dc1b93d4d186")
-        (revision "2"))
+  (let ((commit "746801a677ada6cd6fa076e423aa0953779f3fad")
+        (revision "3"))
     (package
       (name "emacs-unpackaged-el")
       (version (git-version "0" revision commit))
@@ -666,7 +666,7 @@ from within Emacs.")
          (file-name (git-file-name name version))
          (sha256
           (base32
-           "0y3sgvd51l4pb3acps92bazfk49da6nim1f1hyxzy1ravg4kbw83"))))
+           "0jvb2ci0h0lj368qhbff3pzkxj3nhlligpbkjzi525k9rkjgm7l8"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-dash" ,emacs-dash)
-- 
cgit 1.4.1


From 7f07dd7f0e1e34e8904f4dfbefd9c9ea1b255763 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 11:14:46 +0200
Subject: gnu: perl-cache-fastmmap: Update to 1.48.

* gnu/packages/perl.scm (perl-cache-fastmmap): Update to 1.48.
---
 gnu/packages/perl.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 7d1235ed65..5290e22d9b 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -652,14 +652,14 @@ easy to use abstraction of the file system or shared memory.")
 (define-public perl-cache-fastmmap
   (package
     (name "perl-cache-fastmmap")
-    (version "1.47")
+    (version "1.48")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://cpan/authors/id/R/RO/ROBM/"
                            "Cache-FastMmap-" version ".tar.gz"))
        (sha256
-        (base32 "0fdni3iyjfnx8ldgrz3h6z6yxbklrx76klcghg6xvmzd878yqlmi"))))
+        (base32 "118y5lxwa092zrii7mcwnqypff7424w1dpgfkg8zlnz7h2mmnd9c"))))
     (build-system perl-build-system)
     (home-page "https://metacpan.org/release/Cache-FastMmap")
     (synopsis "Shared memory interprocess cache via mmap")
-- 
cgit 1.4.1


From b55e32894175569decd9488af8e192566a173922 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 16:18:05 +0200
Subject: gnu: poedit: Update to 2.2.4.

* gnu/packages/poedit.scm (poedit): Update to 2.2.4.
---
 gnu/packages/poedit.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/poedit.scm b/gnu/packages/poedit.scm
index 0b21a9eea7..3487636a3d 100644
--- a/gnu/packages/poedit.scm
+++ b/gnu/packages/poedit.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2019 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -37,7 +38,7 @@
 (define-public poedit
   (package
     (name "poedit")
-    (version "2.2.1")
+    (version "2.2.4")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -46,7 +47,7 @@
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1fxzmry4b23l90j03jdyvd4jprdpy4xcnhw7xrmmfnlbh2abf9x7"))
+                "147jiiab4n0nbhzp1vw1jn8ykhy7qh6zf02654ppi0imdfvfnjss"))
              (modules '((guix build utils)))
              (snippet
               '(begin
-- 
cgit 1.4.1


From 8fc3a337ab420dc9f80472ce057eae603fc892d3 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 16:21:12 +0200
Subject: gnu: network-manager-applet: Update to 1.8.24.

* gnu/packages/gnome.scm (network-manager-applet): Update to 1.8.24.
---
 gnu/packages/gnome.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 7f16b17499..94458c3cd7 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -5659,7 +5659,7 @@ Cisco's AnyConnect SSL VPN.")
 (define-public network-manager-applet
   (package
     (name "network-manager-applet")
-    (version "1.8.18")
+    (version "1.8.24")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
@@ -5667,7 +5667,7 @@ Cisco's AnyConnect SSL VPN.")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0y31g0lxr93370xi74hbpvcy9m81n5wdkdhq8xy2nqp0y4219p13"))))
+                "1gzvz4wfqfsfclqg56y954al8x6fmz71cnxlx1i4nqr7a25bp2qi"))))
     (build-system meson-build-system)
     (arguments
      '(#:glib-or-gtk? #t))
-- 
cgit 1.4.1


From f64cd5d1acb5089b3657b45302bc0aae1368bf4e Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 16:47:37 +0200
Subject: gnu: sqitch: Update to 1.0.0.

* gnu/packages/databases.scm (sqitch): Update to 1.0.0.
---
 gnu/packages/databases.scm | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index bb7adf25a6..8da96ff51c 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -1156,17 +1156,15 @@ for example from a shell script.")
 (define-public sqitch
   (package
     (name "sqitch")
-    (version "0.9999")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
-             "mirror://cpan/authors/id/D/DW/DWHEELER/App-Sqitch-"
-             version
-             ".tar.gz"))
+             "mirror://cpan/authors/id/D/DW/DWHEELER/App-Sqitch-v"
+             version ".tar.gz"))
        (sha256
-        (base32
-         "1cvj8grs3bzc4g7dw1zc26g4biv1frav18sq0fkvi2kk0q1aigzm"))))
+        (base32 "0p4wraqiscvwmmsvfqfy65blgsilwpvd9zj4d2zvm2xdx70ncr7l"))))
     (build-system perl-build-system)
     (arguments
      '(#:phases
-- 
cgit 1.4.1


From e96a56f62d7aff015b5def145dc2417f9163a8d4 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 17:06:05 +0200
Subject: gnu: r-fields: Update to 9.9.

* gnu/packages/cran.scm (r-fields): Update to 9.9.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8754f83f72..a24187cc07 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10885,14 +10885,13 @@ Differences with other sparse matrix packages are:
 (define-public r-fields
   (package
     (name "r-fields")
-    (version "9.8-6")
+    (version "9.9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "fields" version))
        (sha256
-        (base32
-         "07x95vk1idjfzi5ikn0ijal754mssdmgr1p4nswmx9w3i5ndcqaz"))))
+        (base32 "1qbqdqq76xgnlbc9z643zn4s8k493h1jmav2f465hfvp63306br6"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-maps" ,r-maps)
-- 
cgit 1.4.1


From 41cc799357beaf87384d18abf2c764aaca725e87 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 17:06:47 +0200
Subject: gnu: r-fields: Use HTTPS home-page.

* gnu/packages/cran.scm (r-fields)[home-page]: Use HTTPS.
---
 gnu/packages/cran.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a24187cc07..101e446bcd 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10898,7 +10898,7 @@ Differences with other sparse matrix packages are:
        ("r-spam" ,r-spam)))
     (native-inputs
      `(("gfortran" ,gfortran)))
-    (home-page "http://www.image.ucar.edu/fields")
+    (home-page "https://www.image.ucar.edu/fields")
     (synopsis "Tools for spatial data")
     (description
      "This is a package for curve, surface and function fitting with an
-- 
cgit 1.4.1


From 8c26b18453a6b64fd9f15cf0a700ade3ca4cf72d Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 17:14:03 +0200
Subject: gnu: sudo: Update to 1.8.28 [fixes CVE-2019-14287].

* gnu/packages/admin.scm (sudo): Update to 1.8.28.
---
 gnu/packages/admin.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 3dc5f35af0..35dae2d056 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -1128,7 +1128,7 @@ system administrator.")
 (define-public sudo
   (package
     (name "sudo")
-    (version "1.8.27")
+    (version "1.8.28")
     (source (origin
               (method url-fetch)
               (uri
@@ -1138,7 +1138,7 @@ system administrator.")
                                     version ".tar.gz")))
               (sha256
                (base32
-                "1h1f7v9pv0rzp14cxzv8kaa8mdd717fbqv83l7c5dvvi8jwnisvv"))
+                "188k3w67aflbmi4b5z23pxrvzfcfndi22b84w86gzjh8b9sglaci"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
cgit 1.4.1


From 534610d820a52dcf76b34515c86d704ded590805 Mon Sep 17 00:00:00 2001
From: Stephen Webber <montokapro@gmail.com>
Date: Sun, 13 Oct 2019 10:38:52 -0500
Subject: gnu: Add emacs-dimmer.

    * gnu/packages/emacs-xyz.scm (emacs-dimmer): New variable.
---
 gnu/packages/emacs-xyz.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index bbafd548b1..fce49cc40f 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -54,6 +54,7 @@
 ;;; Copyright © 2019 Amin Bandali <bandali@gnu.org>
 ;;; Copyright © 2019 Jelle Licht <jlicht@fsfe.org>
 ;;; Copyright © 2019 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
+;;; Copyright © 2019 Stephen Webber <montokapro@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -19161,3 +19162,26 @@ Emacs that integrate with major modes like Org-mode.")
      "Elixir-Mode Provides font-locking, indentation and navigation support
  for the Elixir programming language.")
     (license license:gpl3+)))
+
+(define-public emacs-dimmer
+  (package
+    (name "emacs-dimmer")
+    (version "0.3.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/gonewest818/dimmer.el.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1jv9rrv15nb5hpwcaqlpjj932gyisrkwbv11czkg3v0bn7qn6yif"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/gonewest818/dimmer.el")
+    (synopsis "Visually highlights the selected buffer in Emacs")
+    (description "Dimmer provides a minor mode that indicates which buffer is
+currently active by dimming the faces in the other buffers.  It does this
+nondestructively, and computes the dimmed faces dynamically such that your
+overall color scheme is shown in a muted form without requiring you to define
+what is a \"dim\" version of every face.")
+    (license license:gpl3+)))
-- 
cgit 1.4.1


From 6078c0043dc5a2e17c199a7a3d03d4cdb4b766ee Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Mon, 14 Oct 2019 09:48:48 +0200
Subject: gnu: emacs-sly-asdf: Update to 20191013.

* gnu/packages/emacs-xyz.scm (emacs-sly-asdf): Update to 20191013.
---
 gnu/packages/emacs-xyz.scm | 17 ++++-------------
 1 file changed, 4 insertions(+), 13 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index fce49cc40f..e97571bf9f 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7050,8 +7050,8 @@ sly-quickload command that prompts the user for a package to install. ")
       (license license:gpl3+))))
 
 (define-public emacs-sly-asdf
-  (let ((commit "355739e42c91b9b2339f84453292b938b6d17b0d")
-        (revision "1"))
+  (let ((commit "4e323bc28da2f07fd799b6a31b94fd93848b5f3c")
+        (revision "2"))
     (package
       (name "emacs-sly-asdf")
       (version (git-version "0.1.0" revision commit))
@@ -7065,21 +7065,12 @@ sly-quickload command that prompts the user for a package to install. ")
          (file-name (git-file-name name version))
          (sha256
           (base32
-           "1plkqh4dj35c3cf8ykan8fcvqmxcdqragh4j6xg0sls27mjjz1bq"))))
+           "16sc33jhc6ik4ilsyqc3cjpi6v0wdmwjlwrzjwd6yym11bscsmad"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-sly" ,emacs-sly)))
       (arguments
-       `(#:include (cons* "\\.lisp$" "\\.asd$" %default-include)
-         #:phases
-         (modify-phases %standard-phases
-           (add-after 'unpack 'fix-autoload
-             ;; TODO: Reported upstream: https://github.com/mmgeorge/sly-asdf/pull/11
-             (lambda _
-               (substitute* "sly-asdf.el"
-                 (("\\(add-to-list 'sly-contribs 'sly-asdf 'append\\)")
-                  "(with-eval-after-load 'sly
- (add-to-list 'sly-contribs 'sly-asdf 'append))")))))))
+       '(#:include (cons* "\\.lisp$" "\\.asd$" %default-include)))
       (synopsis "ASDF contrib for SLY")
       (description
        "@command{sly-asdf} is an external contrib for SLY that provides
-- 
cgit 1.4.1


From b0cf64c0bc493164515b5a09724c2dd3d3abf511 Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Mon, 14 Oct 2019 10:02:11 +0200
Subject: gnu: Add emacs-sly-named-readtables.

* gnu/packages/emacs-xyz.scm (emacs-sly-named-readtables): New variable.
---
 gnu/packages/emacs-xyz.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index e97571bf9f..ed3d2d43e8 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7077,6 +7077,35 @@ sly-quickload command that prompts the user for a package to install. ")
 additional support for working with ASDF projects.")
       (license license:gpl3+))))
 
+(define-public emacs-sly-named-readtables
+  (let ((commit "a5a42674ccffa97ccd5e4e9742beaf3ea719931f")
+        (revision "1"))
+    (package
+      (name "emacs-sly-named-readtables")
+      (version (git-version "0.1" revision commit))
+      (home-page "https://github.com/joaotavora/sly-named-readtables")
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url home-page)
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "16asd119rzqrlclps2q6yrkis8jy5an5xgzzqvb7jdyq39zxg54q"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-sly" ,emacs-sly)))
+      (arguments
+       '(#:include (cons* "\\.lisp$" "\\.asd$" %default-include)))
+      (synopsis "Named-readtables support for SLY")
+      (description
+       "@command{sly-named-readtables} is an external contrib for SLY that
+enables different readtables to be active in different parts of the same
+file.")
+      (license license:gpl3+))))
+
 (define-public emacs-lua-mode
   (let ((commit "95c64bb5634035630e8c59d10d4a1d1003265743")
         (revision "2"))
-- 
cgit 1.4.1


From de36efc2e0e35e1b6906469d0bab7210c0118c8e Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Mon, 14 Oct 2019 10:02:17 +0200
Subject: gnu: Add emacs-sly-macrostep.

* gnu/packages/emacs-xyz.scm (emacs-sly-macrostep): New variable.
---
 gnu/packages/emacs-xyz.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index ed3d2d43e8..8db581d8af 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7106,6 +7106,39 @@ enables different readtables to be active in different parts of the same
 file.")
       (license license:gpl3+))))
 
+(define-public emacs-sly-macrostep
+  (let ((commit "be2d24545092d164be1a91031d8881afd29c9ec0")
+        (revision "1"))
+    (package
+      (name "emacs-sly-macrostep")
+      (version (git-version "0.1" revision commit))
+      (home-page "https://github.com/joaotavora/sly-macrostep")
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url home-page)
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0v8m3zkccpqd2l8m9340y672l2mm3mrry8422nva5kfvpcwdayqb"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-sly" ,emacs-sly)
+         ("emacs-macrostep" ,emacs-macrostep)))
+      (arguments
+       '(#:include (cons* "\\.lisp$" "\\.asd$" %default-include)
+         #:phases
+         ;; The package provides autoloads.
+         (modify-phases %standard-phases
+           (delete 'make-autoloads))))
+      (synopsis "Expand Common Lisp macros inside source files with SLY")
+      (description
+       "@command{sly-macrostep} is a SLY contrib for expanding CL macros right
+inside the source file.")
+      (license license:gpl3+))))
+
 (define-public emacs-lua-mode
   (let ((commit "95c64bb5634035630e8c59d10d4a1d1003265743")
         (revision "2"))
-- 
cgit 1.4.1


From 14db074e288a67017828415fcd553e96ba6cf00d Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Mon, 14 Oct 2019 17:58:07 +0200
Subject: gnu: Add emacs-sly-package-inferred.

* gnu/packages/emacs-xyz.scm (emacs-sly-package-inferred): New variable.
---
 gnu/packages/emacs-xyz.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 8db581d8af..c9fbb2929e 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7139,6 +7139,39 @@ file.")
 inside the source file.")
       (license license:gpl3+))))
 
+(define-public emacs-sly-package-inferred
+  (let ((commit "800e71e2be631422277e2ec77e6d6f6ea20e95ef")
+        (revision "1"))
+    (package
+      (name "emacs-sly-package-inferred")
+      (version (git-version "0.1" revision commit))
+      (home-page "https://github.com/40ants/sly-package-inferred")
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url home-page)
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1216idyp034nkqddhw4p53jkhhdxa6xnjjmsvijpf4rxqnfqvapg"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-sly" ,emacs-sly)))
+      (arguments
+       '(#:include (cons* "\\.lisp$" "\\.asd$" %default-include)
+         #:phases
+         ;; The package provides autoloads.
+         (modify-phases %standard-phases
+           (delete 'make-autoloads))))
+      (synopsis "Improved package inferred systems support for SLY")
+      (description
+       "@command{sly-package-inferred} is an external contrib for SLY that
+replaces its completion with a function which is better suited for systems
+using package inferred style.")
+      (license license:gpl3+))))
+
 (define-public emacs-lua-mode
   (let ((commit "95c64bb5634035630e8c59d10d4a1d1003265743")
         (revision "2"))
-- 
cgit 1.4.1


From 40be965e28062ab37ab7c7ed6647600fa8671ed0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 14 Oct 2019 17:58:20 +0200
Subject: gnu: Add r-phastcons100way-ucsc-hg19.

* gnu/packages/bioconductor.scm (r-phastcons100way-ucsc-hg19): New variable.
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7b0405427c..bb28493935 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -832,6 +832,36 @@ Disease Ontology.")
 using data from public repositories.")
     (license license:artistic2.0)))
 
+(define-public r-phastcons100way-ucsc-hg19
+  (package
+    (name "r-phastcons100way-ucsc-hg19")
+    (version "3.7.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "phastCons100way.UCSC.hg19"
+                              version 'annotation))
+       (sha256
+        (base32
+         "1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"))))
+    (properties
+     `((upstream-name . "phastCons100way.UCSC.hg19")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)
+       ("r-genomeinfodb" ,r-genomeinfodb)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-genomicscores" ,r-genomicscores)
+       ("r-iranges" ,r-iranges)
+       ("r-s4vectors" ,r-s4vectors)))
+    (home-page "https://bioconductor.org/packages/phastCons100way.UCSC.hg19")
+    (synopsis "UCSC phastCons conservation scores for hg19")
+    (description
+     "This package provides UCSC phastCons conservation scores for the human
+genome (hg19) calculated from multiple alignments with other 99 vertebrate
+species.")
+    (license license:artistic2.0)))
+
 
 ;;; Experiment data
 
-- 
cgit 1.4.1


From b06cdce923d6b8b40c1238cb1a2b9db277d3394e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 14 Oct 2019 18:22:46 +0200
Subject: gnu: Add r-velocyto.

* gnu/packages/bioinformatics.scm (r-velocyto): New variable.
---
 gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a573ef682f..12c30236cb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15260,3 +15260,47 @@ and/or unmapped/clipped reads to a separate FASTQ file. When marking
 duplicates, samblaster will require approximately 20MB of memory per 1M read
 pairs.")
     (license license:expat)))
+
+(define-public r-velocyto
+  (let ((commit "d7790346cb99f49ab9c2b23ba70dcf9d2c9fc350")
+        (revision "1"))
+    (package
+      (name "r-velocyto")
+      (version (git-version "0.6" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/velocyto-team/velocyto.R.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "16wqf70j7rd7pay2q513iyz12i8n9vrpg1bisah4lddbcpx5dz1n"))))
+      (build-system r-build-system)
+      (inputs
+       `(("boost" ,boost)))
+      (propagated-inputs
+       `(("r-hdf5r" ,r-hdf5r)
+         ("r-mass" ,r-mass)
+         ("r-mgcv" ,r-mgcv)
+         ("r-pcamethods" ,r-pcamethods)
+         ("r-rcpp" ,r-rcpp)
+         ("r-rcpparmadillo" ,r-rcpparmadillo)
+         ;; Suggested packages
+         ("r-rtsne" ,r-rtsne)
+         ("r-cluster" ,r-cluster)
+         ("r-abind" ,r-abind)
+         ("r-h5" ,r-h5)
+         ("r-biocgenerics" ,r-biocgenerics)
+         ("r-genomicalignments" ,r-genomicalignments)
+         ("r-rsamtools" ,r-rsamtools)
+         ("r-edger" ,r-edger)
+         ("r-igraph" ,r-igraph)))
+      (home-page "http://velocyto.org")
+      (synopsis "RNA velocity estimation in R")
+      (description
+       "This package provides basic routines for estimation of gene-specific
+transcriptional derivatives and visualization of the resulting velocity
+patterns.")
+      (license license:gpl3))))
-- 
cgit 1.4.1


From 5dbc79eb60f4d72953e11f3a7558ef3037b8bdb6 Mon Sep 17 00:00:00 2001
From: Maurice Brémond <Maurice.Bremond@inria.fr>
Date: Mon, 14 Oct 2019 16:45:53 +0200
Subject: gnu: mumps: Update to 5.2.1.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/maths.scm (mumps): Update to 5.2.1.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
---
 gnu/packages/maths.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 6f75fba879..ee633e32f8 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2171,7 +2171,7 @@ bindings to almost all functions of SLEPc.")
 (define-public mumps
   (package
     (name "mumps")
-    (version "5.1.2")
+    (version "5.2.1")
     (source
      (origin
        (method url-fetch)
@@ -2179,7 +2179,7 @@ bindings to almost all functions of SLEPc.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1s9asin08zqzmh08257sdghhivvy9vjif7c53fhaxaax2kd5qd7b"))
+         "0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r"))
        (patches (search-patches "mumps-build-parallelism.patch"))))
     (build-system gnu-build-system)
     (inputs
-- 
cgit 1.4.1


From 06e1239502e7cc91f62161f8bab35bbe0119f2e5 Mon Sep 17 00:00:00 2001
From: Maurice Brémond <Maurice.Bremond@inria.fr>
Date: Mon, 14 Oct 2019 17:44:54 +0200
Subject: gnu: mumps: Build and install shared libraries.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/patches/mumps-shared-libseq.patch,
gnu/packages/patches/mumps-shared-mumps.patch,
gnu/packages/patches/mumps-shared-pord.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mumps)[source](patches): Add them.
[arguments]: In 'configure' phase, adjust "Makefile.inc" for shared
library support.  In 'install' phase, install libmpiseq.so when it
exists.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
---
 gnu/local.mk                                   |  3 +
 gnu/packages/maths.scm                         | 23 +++++---
 gnu/packages/patches/mumps-shared-libseq.patch | 42 ++++++++++++++
 gnu/packages/patches/mumps-shared-mumps.patch  | 63 +++++++++++++++++++++
 gnu/packages/patches/mumps-shared-pord.patch   | 77 ++++++++++++++++++++++++++
 5 files changed, 200 insertions(+), 8 deletions(-)
 create mode 100644 gnu/packages/patches/mumps-shared-libseq.patch
 create mode 100644 gnu/packages/patches/mumps-shared-mumps.patch
 create mode 100644 gnu/packages/patches/mumps-shared-pord.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 3caaec4046..6ec1bbf2e4 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1132,6 +1132,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/mtools-mformat-uninitialized.patch	\
   %D%/packages/patches/mumble-1.2.19-abs.patch			\
   %D%/packages/patches/mumps-build-parallelism.patch		\
+  %D%/packages/patches/mumps-shared-libseq.patch		\
+  %D%/packages/patches/mumps-shared-mumps.patch			\
+  %D%/packages/patches/mumps-shared-pord.patch			\
   %D%/packages/patches/mupen64plus-ui-console-notice.patch	\
   %D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch    \
   %D%/packages/patches/mutt-store-references.patch		\
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index ee633e32f8..06b34e2b89 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2180,7 +2180,10 @@ bindings to almost all functions of SLEPc.")
        (sha256
         (base32
          "0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r"))
-       (patches (search-patches "mumps-build-parallelism.patch"))))
+       (patches (search-patches "mumps-build-parallelism.patch"
+                                "mumps-shared-libseq.patch"
+                                "mumps-shared-mumps.patch"
+                                "mumps-shared-pord.patch"))))
     (build-system gnu-build-system)
     (inputs
      `(("fortran" ,gfortran)
@@ -2210,15 +2213,17 @@ CC           = gcc
 FC           = gfortran
 FL           = gfortran
 INCSEQ       = -I$(topdir)/libseq
-LIBSEQ       = -L$(topdir)/libseq -lmpiseq
+LIBSEQ       = $(topdir)/libseq/libmpiseq.a
 LIBSEQNEEDED = libseqneeded~;
 CC           = mpicc
 FC           = mpifort
 FL           = mpifort~]
 AR           = ar vr # rules require trailing space, ugh...
 RANLIB       = ranlib
-LIBBLAS      = -L~a -lopenblas~@[
-SCALAP       = -L~a -lscalapack~]
+BLASDIR      = ~a
+LIBBLAS      = -Wl,-rpath=$(BLASDIR) -Wl,-rpath='$$ORIGIN' -L$(BLASDIR) -lopenblas~@[
+SCALAPDIR    = ~a
+SCALAP       = -Wl,-rpath=$(SCALAPDIR) -Wl,-rpath='$$ORIGIN' -L$(SCALAPDIR) -lscalapack~]
 LIBOTHERS    = -pthread
 CDEFS        = -DAdd_
 PIC          = -fPIC
@@ -2229,18 +2234,18 @@ INCS         = $(INCSEQ)
 LIBS         = $(SCALAP) $(LIBSEQ)
 LPORDDIR     = $(topdir)/PORD/lib
 IPORD        = -I$(topdir)/PORD/include
-LPORD        = -L$(LPORDDIR) -lpord
+LPORD        = $(LPORDDIR)/libpord.a
 ORDERINGSF   = -Dpord~@[
 METISDIR     = ~a
 IMETIS       = -I$(METISDIR)/include
-LMETIS       = -L$(METISDIR)/lib -lmetis
+LMETIS       = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis
 ORDERINGSF  += -Dmetis~]~@[~:{
 SCOTCHDIR    = ~a
 ISCOTCH      = -I$(SCOTCHDIR)/include
-LSCOTCH      = -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr
+LSCOTCH      = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr
 ORDERINGSF  += ~a~}~]
 ORDERINGSC   = $(ORDERINGSF)
-LORDERINGS   = $(LPORD) $(LMETIS) $(LSCOTCH)
+LORDERINGS   = $(LPORD) $(LMETIS) $(LSCOTCH) $(LIBSEQ)
 IORDERINGSF  = $(ISCOTCH)
 IORDERINGSC  = $(IPORD) $(IMETIS) $(ISCOTCH)"
                         (assoc-ref inputs "mpi")
@@ -2294,6 +2299,8 @@ IORDERINGSC  = $(IPORD) $(IMETIS) $(ISCOTCH)"
                (copy-recursively "include" (string-append out "/include"))
                (when (file-exists? "libseq/libmpiseq.a")
                  (install-file "libseq/libmpiseq.a" libdir))
+               (when (file-exists? "libseq/libmpiseq.so")
+                 (install-file "libseq/libmpiseq.so" libdir))
                #t))))))
     (home-page "http://mumps.enseeiht.fr")
     (synopsis "Multifrontal sparse direct solver")
diff --git a/gnu/packages/patches/mumps-shared-libseq.patch b/gnu/packages/patches/mumps-shared-libseq.patch
new file mode 100644
index 0000000000..feafcf123b
--- /dev/null
+++ b/gnu/packages/patches/mumps-shared-libseq.patch
@@ -0,0 +1,42 @@
+Create a shared version of the sequential library, MUST BE LAST IN SERIES
+
+Index: mumps/libseq/Makefile
+===================================================================
+--- mumps.orig/libseq/Makefile
++++ mumps/libseq/Makefile
+@@ -8,15 +8,17 @@ all: libmpiseq
+ 
+ include ../Makefile.inc
+ 
+-libmpiseq: libmpiseq$(PLAT)$(LIBEXT)
++libmpiseq: libmpiseq$(PLAT).a libmpiseq$(PLAT).so
+ 
+-libmpiseq$(PLAT)$(LIBEXT): mpi.o mpic.o elapse.o
+-	$(AR)$@ mpi.o mpic.o elapse.o
++libmpiseq$(PLAT).a: mpi.o mpic.o elapse.o
++	$(AR) $@ mpi.o mpic.o elapse.o
+ 	$(RANLIB) $@
++libmpiseq$(PLAT).so: mpi.o mpic.o elapse.o
++	$(FC) -shared $^ -Wl,-soname,libmpiseq$(PLAT)-5.1.2.so -o libmpiseq$(PLAT)-5.1.2.so -Wl,-z,defs
+ .f.o:
+-	$(FC) $(OPTF)              -c $*.f $(OUTF)$*.o
++	$(FC) $(OPTF)              -fPIC -c $*.f $(OUTF)$*.o
+ .c.o:
+-	$(CC) $(OPTC) $(CDEFS) -I. -c $*.c $(OUTC)$*.o
++	$(CC) $(OPTC) $(CDEFS) -I. -fPIC -c $*.c $(OUTC)$*.o
+ 
+ clean:
+-	$(RM) *.o *$(LIBEXT)
++	$(RM) *.o *.a *.so
+Index: mumps/Makefile
+===================================================================
+--- mumps.orig/Makefile
++++ mumps/Makefile
+@@ -60,6 +60,7 @@ requiredobj: Makefile.inc $(LIBSEQNEEDED
+ 
+ libseqneeded:
+ 	(cd libseq; $(MAKE))
++	cp libseq/lib* $(libdir)
+ 
+ # Build the libpord.a library and copy it into $(topdir)/lib
+ $(libdir)/libpord$(PLAT).a:
diff --git a/gnu/packages/patches/mumps-shared-mumps.patch b/gnu/packages/patches/mumps-shared-mumps.patch
new file mode 100644
index 0000000000..9e2491f300
--- /dev/null
+++ b/gnu/packages/patches/mumps-shared-mumps.patch
@@ -0,0 +1,63 @@
+Create a shared version of the MUMPS library.
+
+Index: mumps/src/Makefile
+===================================================================
+--- mumps.orig/src/Makefile
++++ mumps/src/Makefile
+@@ -23,8 +23,10 @@ z:
+ 
+ include $(topdir)/Makefile.inc
+ 
+-mumps_lib:    $(libdir)/libmumps_common$(PLAT)$(LIBEXT) \
+-              $(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT)
++mumps_lib:    $(libdir)/libmumps_common$(PLAT).a \
++              $(libdir)/libmumps_common$(PLAT).so \
++              $(libdir)/lib$(ARITH)mumps$(PLAT).a \
++              $(libdir)/lib$(ARITH)mumps$(PLAT).so
+ 
+ OBJS_COMMON_MOD = \
+         lr_common.o \
+@@ -167,14 +169,22 @@ OBJS_OTHER = \
+         $(ARITH)tools.o\
+         $(ARITH)type3_root.o
+ 
+-$(libdir)/libmumps_common$(PLAT)$(LIBEXT):      $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER)
+-	$(AR)$@ $?
++$(libdir)/libmumps_common$(PLAT).a:      $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER)
++	$(AR) $@ $?
+ 	$(RANLIB) $@
+ 
+-$(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT):    $(OBJS_MOD) $(OBJS_OTHER)
+-	$(AR)$@ $?
++$(libdir)/libmumps_common$(PLAT).so:      $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER)
++	$(FC) -shared $^ -Wl,-soname,libmumps_common$(PLAT)-5.1.2.so -L$(libdir) $(LORDERINGS) -lpthread $(MPIFLIB) $(MPICLIB) $(LEXTRAS) -o $(libdir)/libmumps_common$(PLAT)-5.1.2.so -Wl,-z,defs
++	ln -s libmumps_common$(PLAT)-5.1.2.so $@
++
++$(libdir)/lib$(ARITH)mumps$(PLAT).a:    $(OBJS_MOD) $(OBJS_OTHER)
++	$(AR) $@ $?
+ 	$(RANLIB) $@
+ 
++$(libdir)/lib$(ARITH)mumps$(PLAT).so:    $(OBJS_MOD) $(OBJS_OTHER)
++	$(FC) -shared $^ -Wl,-soname,lib$(ARITH)mumps$(PLAT)-5.1.2.so -L$(libdir) -lmumps_common$(PLAT) $(LORDERINGS) $(MPIFLIB) $(LEXTRAS) $(LIBBLAS) $(SCALAP) $(LAPACK) -o $(libdir)/lib$(ARITH)mumps$(PLAT)-5.1.2.so -Wl,-z,defs
++	ln -s lib$(ARITH)mumps$(PLAT)-5.1.2.so $@
++
+ # Dependencies between modules:
+ $(ARITH)mumps_load.o:		$(ARITH)mumps_comm_buffer.o \
+ 				$(ARITH)mumps_struc_def.o \
+@@ -290,13 +300,13 @@ $(OBJS_OTHER):$(OBJS_COMMON_MOD) $(OBJS_
+ 
+ .SUFFIXES: .c .F .o
+ .F.o:
+-	$(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -c $*.F $(OUTF)$*.o
++	$(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -fPIC -c $*.F $(OUTF)$*.o
+ .c.o:
+-	$(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -c $*.c $(OUTC)$*.o
++	$(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -fPIC -c $*.c $(OUTC)$*.o
+ 
+ $(ARITH)mumps_c.o:	mumps_c.c
+ 	$(CC) $(OPTC) $(INCS) $(CDEFS) -DMUMPS_ARITH=MUMPS_ARITH_$(ARITH) \
+-	      $(IORDERINGSC) $(ORDERINGSC) -I../include -c mumps_c.c $(OUTC)$@
++	      $(IORDERINGSC) $(ORDERINGSC) -I../include -fPIC -c mumps_c.c $(OUTC)$@
+ 
+ 
+ clean:
diff --git a/gnu/packages/patches/mumps-shared-pord.patch b/gnu/packages/patches/mumps-shared-pord.patch
new file mode 100644
index 0000000000..48062d4f89
--- /dev/null
+++ b/gnu/packages/patches/mumps-shared-pord.patch
@@ -0,0 +1,77 @@
+Create static and shared versions of the PORD library.
+
+Index: mumps/PORD/lib/Makefile
+===================================================================
+--- mumps.orig/PORD/lib/Makefile
++++ mumps/PORD/lib/Makefile
+@@ -9,7 +9,7 @@
+ 
+ INCLUDES = -I../include
+ 
+-COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS)
++COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS) -fPIC
+ 
+ OBJS = graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o \
+        multisector.o gelim.o bucket.o tree.o \
+@@ -24,12 +24,16 @@ OBJS = graph.o gbipart.o gbisect.o ddcre
+ .c.o:
+ 	$(CC) $(COPTIONS) -c $*.c $(OUTC)$*.o
+ 
+-libpord$(LIBEXT):$(OBJS)
+-	$(AR)$@ $(OBJS)
++libpord$(PLAT).a:$(OBJS)
++	$(AR) $@ $(OBJS)
+ 	$(RANLIB) $@
+ 
++libpord$(PLAT).so: $(OBJS)
++	$(CC) -shared $(OBJS) -Wl,-soname,libpord$(PLAT)-5.1.2.so -o libpord$(PLAT)-5.1.2.so -Wl,-z,defs
++	ln -s libpord$(PLAT)-5.1.2.so $@
++
+ clean:
+ 	rm -f *.o
+ 
+ realclean:
+-	rm -f *.o libpord.a
++	rm -f *.o libpord*.a *.so
+Index: mumps/Makefile
+===================================================================
+--- mumps.orig/Makefile
++++ mumps/Makefile
+@@ -54,7 +54,7 @@ dexamples:	d
+ multi_example:	s d c z
+ 	(cd examples ; $(MAKE) multi)
+ 
+-requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT)$(LIBEXT)
++requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT).a $(libdir)/libpord$(PLAT).so
+ 
+ # dummy MPI library (sequential version)
+ 
+@@ -62,19 +62,25 @@ libseqneeded:
+ 	(cd libseq; $(MAKE))
+ 
+ # Build the libpord.a library and copy it into $(topdir)/lib
+-$(libdir)/libpord$(PLAT)$(LIBEXT):
++$(libdir)/libpord$(PLAT).a:
+ 	if [ "$(LPORDDIR)" != "" ] ; then \
+ 	  cd $(LPORDDIR); \
+ 	  $(MAKE) CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" RANLIB="$(RANLIB)" OUTC="$(OUTC)" LIBEXT=$(LIBEXT); \
+ 	fi;
+ 	if [ "$(LPORDDIR)" != "" ] ; then \
+-	  cp $(LPORDDIR)/libpord$(LIBEXT) $@; \
++	  cp $(LPORDDIR)/libpord$(PLAT).a $@; \
+ 	fi;
+ 
++$(libdir)/libpord$(PLAT).so:
++	if [ "$(LPORDDIR)" != "" ] ; then \
++	cd $(LPORDDIR); make CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" ARFUNCT= RANLIB="$(RANLIB)" libpord$(PLAT).so; fi;
++	if [ "$(LPORDDIR)" != "" ] ; then \
++	cp -a $(LPORDDIR)/libpord*.so lib/; fi;
++
+ clean:
+ 	(cd src; $(MAKE) clean)
+ 	(cd examples; $(MAKE) clean)
+-	(cd $(libdir); $(RM) *$(PLAT)$(LIBEXT))
++	(cd $(libdir); $(RM) *$(PLAT).a *$(PLAT).so)
+ 	(cd libseq; $(MAKE) clean)
+ 	if [ "$(LPORDDIR)" != "" ] ; then \
+ 	  cd $(LPORDDIR); $(MAKE) realclean; \
-- 
cgit 1.4.1


From a00a946ac5b0a3dd0681f5ba009b42f0f1804e39 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Mon, 14 Oct 2019 18:04:42 +0200
Subject: gnu: gfortran: Add version 9.x.

* gnu/packages/gcc.scm (gfortran-9): New variable.
---
 gnu/packages/gcc.scm | 4 ++++
 1 file changed, 4 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm
index 2bcf05e41b..bda6a2b48a 100644
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@ -672,6 +672,10 @@ as the 'native-search-paths' field."
   (custom-gcc gcc-8 "gfortran" '("fortran")
               %generic-search-paths))
 
+(define-public gfortran-9
+  (custom-gcc gcc-9 "gfortran" '("fortran")
+              %generic-search-paths))
+
 (define-public gfortran
   ;; Note: Update this when GCC changes!  We cannot use
   ;; (custom-gcc gcc "fortran" …) because that would lead to a package object
-- 
cgit 1.4.1


From 7a6bbe9b68988111362f66f71324bcdcb14b0a51 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Mon, 14 Oct 2019 18:24:35 +0200
Subject: gnu: gspell: Update to 1.8.2.

* gnu/packages/gnome.scm (gspell): Update to 1.8.2.
---
 gnu/packages/gnome.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 94458c3cd7..cd167cf395 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -7679,7 +7679,7 @@ that support the Assistive Technology Service Provider Interface (AT-SPI).")
 (define-public gspell
   (package
     (name "gspell")
-    (version "1.8.1")
+    (version "1.8.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
@@ -7687,7 +7687,7 @@ that support the Assistive Technology Service Provider Interface (AT-SPI).")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1rdv873ixhwr15jwgc2z6k6y0hj353fqnwsy7zkh0c30qwiiv6l1"))
+                "1miybm1z5cl91i25l7mfqlxhv7j8yy8rcgi0s1bgbb2vm71rb4dv"))
               (patches (search-patches "gspell-dash-test.patch"))))
     (build-system glib-or-gtk-build-system)
     (arguments
-- 
cgit 1.4.1


From 29ea9e14ee1d90bd7aefbcbbf89ba9d4bb46b65d Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Mon, 14 Oct 2019 18:25:13 +0200
Subject: gnu: gtkmm: Update to 3.24.1.

* gnu/packages/gtk.scm (gtkmm): Update to 3.24.1.
---
 gnu/packages/gtk.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 34f9ca3844..8f991a347b 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -1093,7 +1093,7 @@ toolkit.")
 (define-public gtkmm
   (package
     (name "gtkmm")
-    (version "3.24.0")
+    (version "3.24.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnome/sources/" name "/"
@@ -1101,7 +1101,7 @@ toolkit.")
                                  name "-" version ".tar.xz"))
              (sha256
               (base32
-               "0hxaq4x9jqj8vvnv3sb6nwapz83v8lclbm887qqci0g50llcjpyg"))))
+               "1zfj89spr8ianib5y10wcw63ybdmyjy58a15vqs0m8jq4knl5znx"))))
     (build-system gnu-build-system)
     (native-inputs `(("pkg-config" ,pkg-config)
                      ("glib" ,glib "bin")        ;for 'glib-compile-resources'
-- 
cgit 1.4.1


From 303469d69e289c592cf564c6a3a69e5fa0ce7f56 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Sun, 13 Oct 2019 16:54:22 +0300
Subject: gnu: Add enlightenment-wayland.

* gnu/packages/enlightenment.scm (enlightenment-wayland): New variable.
---
 gnu/packages/enlightenment.scm | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm
index 1da6d2aea2..857a8ddd1b 100644
--- a/gnu/packages/enlightenment.scm
+++ b/gnu/packages/enlightenment.scm
@@ -25,6 +25,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix utils)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system python)
@@ -362,6 +363,19 @@ unload unused functionality, with support for touchscreen and suitable for
 embedded systems.")
     (license license:bsd-2)))
 
+(define-public enlightenment-wayland
+  (package
+    (inherit enlightenment)
+    (name "enlightenment-wayland")
+    (arguments
+     (substitute-keyword-arguments (package-arguments enlightenment)
+       ((#:configure-flags flags)
+        `(cons* "-Dwl=true" ,flags))))
+    (inputs
+     `(("wayland-protocols" ,wayland-protocols)
+       ("xorg-server-xwayland" ,xorg-server-xwayland)
+       ,@(package-inputs enlightenment)))))
+
 (define-public python-efl
   (package
     (name "python-efl")
-- 
cgit 1.4.1


From 8e45ec509e9d6c583cd7fcaf66e269d483685be1 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 18:06:28 +0200
Subject: gnu: sqitch: Remove perl-file-homedir input.

* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir.
---
 gnu/packages/databases.scm | 1 -
 1 file changed, 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 8da96ff51c..11568b509c 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -1208,7 +1208,6 @@ for example from a shell script.")
        ("perl-dbi" ,perl-dbi)
        ("perl-devel-stacktrace" ,perl-devel-stacktrace)
        ("perl-encode-locale" ,perl-encode-locale)
-       ("perl-file-homedir" ,perl-file-homedir)
        ("perl-hash-merge" ,perl-hash-merge)
        ("perl-ipc-run3" ,perl-ipc-run3)
        ("perl-ipc-system-simple" ,perl-ipc-system-simple)
-- 
cgit 1.4.1


From 4df49d196875a4523a7b72e1660237a47996a2aa Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 18:10:52 +0200
Subject: gnu: python-glob2: Update to 0.7.

* gnu/packages/python-xyz.scm (python-glob2): Update to 0.7.
---
 gnu/packages/python-xyz.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8137d665fd..7f8a247439 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15065,16 +15065,16 @@ manager compatible with @code{asyncio}.")
 (define-public python-glob2
   (package
     (name "python-glob2")
-    (version "0.6")
+    (version "0.7")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/miracle2k/python-glob2.git")
-             (commit version)))
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1lm1xz3k3l0k1c5bcp9hlzmi3gp5j8dl1k3xhpiq5mnm0xq6n163"))))
+        (base32 "160nh2ay9lw2hi0rixpzb2k87r6ql56k0j2cm87lqz8xc8zbw919"))))
     (build-system python-build-system)
     (home-page "https://github.com/miracle2k/python-glob2/")
     (synopsis "Extended Version of the python buildin glob module")
-- 
cgit 1.4.1


From 53a3ebed68b6a9b8a1ebe8612ecb94f7715ef82b Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 19:21:47 +0200
Subject: gnu: python-colorspacious: Update to 1.1.2.

* gnu/packages/python-xyz.scm (python-colorspacious): Update to 1.1.2.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7f8a247439..3252517be0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3892,7 +3892,7 @@ To address this and enable easy cycling over arbitrary @code{kwargs}, the
 (define-public python-colorspacious
   (package
     (name "python-colorspacious")
-    (version "1.1.0")
+    (version "1.1.2")
     (source
      (origin
        (method git-fetch)
@@ -3901,7 +3901,7 @@ To address this and enable easy cycling over arbitrary @code{kwargs}, the
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0g0lxqiscy5g5rq9421vv7abg0c90jzy0zmas2z3hya6k2dr5aid"))))
+        (base32 "0x7nkphr6g5ql5fvgss8l56rgiyjgh6fm8zzs73i94ci9wzlm63w"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-numpy" ,python-numpy)))
-- 
cgit 1.4.1


From ef68b35da9ebcc913fae18fd62c8a1f817e19c55 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 19:32:46 +0200
Subject: gnu: python-py3status: Update to 3.21.

* gnu/packages/python-xyz.scm (python-py3status): Update to 3.21.
---
 gnu/packages/python-xyz.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3252517be0..d555512ed7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9962,14 +9962,13 @@ to occurrences in strings and comments.")
 (define-public python-py3status
   (package
     (name "python-py3status")
-    (version "3.16")
+    (version "3.21")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "py3status" version))
        (sha256
-        (base32
-         "1xrfph277bgjln3jbpzpgkhxad04fjvj7s3xfil42q1sxi4s3q3g"))))
+        (base32 "16z8zq83hxy48g6hh4xczbdz50qvxv9k1aahr4fqq7jis60cc262"))))
     (build-system python-build-system)
     (inputs
      `(("file" ,file)))
-- 
cgit 1.4.1


From c7c23eb622f63037f020cde39cfb25f1d5cc29fc Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 19:38:32 +0200
Subject: gnu: ddcutil: Update to 0.9.7.

* gnu/packages/hardware.scm (ddcutil): Update to 0.9.7.
---
 gnu/packages/hardware.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/hardware.scm b/gnu/packages/hardware.scm
index a735ecb011..eb7471b681 100644
--- a/gnu/packages/hardware.scm
+++ b/gnu/packages/hardware.scm
@@ -38,14 +38,14 @@
 (define-public ddcutil
   (package
     (name "ddcutil")
-    (version "0.9.5")
+    (version "0.9.7")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.ddcutil.com/tarballs/"
                            "ddcutil-" version ".tar.gz"))
        (sha256
-        (base32 "18brwj54dkjylvpx7c6ksf7fzhdjffi60avyg7qbs8vw9awnsxqz"))))
+        (base32 "0lqc3fn5h7acfmbmyi8hpv2p6b4csfbx3lkhzy073s9x2zblrq3g"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-- 
cgit 1.4.1


From dc505e3eb88faf3c952aa1de4a12a42111c3742c Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Mon, 14 Oct 2019 20:43:49 +0300
Subject: gnu: vim-fugitive: Update to 3.1.

* gnu/packages/vim.scm (vim-fugitive): Update to 3.1.
---
 gnu/packages/vim.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index b1f47bd010..9515b1765b 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -483,7 +483,7 @@ trouble using them, because you do not have to remember each snippet name.")
 (define-public vim-fugitive
   (package
     (name "vim-fugitive")
-    (version "3.0")
+    (version "3.1")
     (source
       (origin
         (method git-fetch)
@@ -493,7 +493,7 @@ trouble using them, because you do not have to remember each snippet name.")
         (file-name (git-file-name name version))
         (sha256
          (base32
-          "0ghh8a9xysc3njqql1khhl2dkhymz93snpwqp2apm7pka6l893bc"))))
+          "0d9jhmidmy5c60iy9x47gqr675n5wp9wrzln83r8ima1fz7vvbgs"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f
-- 
cgit 1.4.1


From 19e42618376e92cb9745197642ff5cb4afa39945 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Mon, 14 Oct 2019 22:37:54 +0200
Subject: gnu: Add methyldackel.

* gnu/packages/bioinformatics.scm (methyldackel): New variable.
---
 gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 12c30236cb..5f57a59b06 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15304,3 +15304,47 @@ pairs.")
 transcriptional derivatives and visualization of the resulting velocity
 patterns.")
       (license license:gpl3))))
+
+(define-public methyldackel
+  (package
+    (name "methyldackel")
+    (version "0.4.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/dpryan79/MethylDackel.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "10gh8k0ca92kywnrw5pkacq3g6r8s976s12k8jhp8g3g49q9a97g"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:test-target "test"
+       #:make-flags
+       (list "CC=gcc"
+             (string-append "prefix="
+                            (assoc-ref %outputs "out") "/bin/"))
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           (lambda* (#:key outputs #:allow-other-keys)
+             (substitute* "Makefile"
+               (("install MethylDackel \\$\\(prefix\\)" match)
+                (string-append "install -d $(prefix); " match)))
+             #t)))))
+    (inputs
+     `(("htslib" ,htslib)
+       ("zlib" ,zlib)))
+    ;; Needed for tests
+    (native-inputs
+     `(("python" ,python-wrapper)))
+    (home-page "https://github.com/dpryan79/MethylDackel")
+    (synopsis "Universal methylation extractor for BS-seq experiments")
+    (description
+     "MethylDackel will process a coordinate-sorted and indexed BAM or CRAM
+file containing some form of BS-seq alignments and extract per-base
+methylation metrics from them.  MethylDackel requires an indexed fasta file
+containing the reference genome as well.")
+    ;; See https://github.com/dpryan79/MethylDackel/issues/85
+    (license license:expat)))
-- 
cgit 1.4.1


From 36f6ed2c64f74193b45e343630d64b083b98b936 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 13:54:53 -0700
Subject: gnu: Add emacs-fringe-helper.

* gnu/packages/emacs-xyz.scm (emacs-fringe-helper): New variable.
---
 gnu/packages/emacs-xyz.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index c9fbb2929e..b6c7f523a8 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -2340,6 +2340,34 @@ Stack Overflow, Super User, and other StackExchange sites.")
 files and directories.")
     (license license:gpl3+)))
 
+(define-public emacs-fringe-helper
+  (let ((commit "ef4a9c023bae18ec1ddd7265f1f2d6d2e775efdd")
+        (revision "1"))
+    (package
+      (name "emacs-fringe-helper")
+      (version (git-version "1.0.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/nschum/fringe-helper.el.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0ra9rc53l1gvkqank8apasl3r7wz2yfjrcvmfk3wpxhh24ppxv9d"))))
+      (build-system emacs-build-system)
+      (arguments
+       `(#:tests? #t
+         #:test-command '("emacs" "--batch"
+                          "-l" "tests.el"
+                          "-f" "ert-run-tests-batch-and-exit")))
+      (home-page "https://github.com/nschum/fringe-helper.el")
+      (synopsis "Helper functions for fringe bitmaps")
+      (description
+       "This package allows fringe bitmaps to be defined with a visual string
+representation.")
+      (license license:gpl2+))))
+
 (define-public emacs-git-gutter
   (package
     (name "emacs-git-gutter")
-- 
cgit 1.4.1


From 2322c9458cafa9519ca044f78720607de9838e88 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 13:55:09 -0700
Subject: gnu: Add emacs-git-gutter-fringe.

* gnu/packages/emacs-xyz.scm (emacs-git-gutter-fringe): New variable.
---
 gnu/packages/emacs-xyz.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index b6c7f523a8..09ade9e493 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -2394,6 +2394,32 @@ Git, Mercurial, Subversion and Bazaar are supported, and many parts of the
 display and behaviour is easily customisable.")
     (license license:gpl3+)))
 
+(define-public emacs-git-gutter-fringe
+  (let ((commit "16226caab44174301f1659f7bf8cc67a76153445")
+        (revision "1"))
+    (package
+      (name "emacs-git-gutter-fringe")
+      (version (git-version "0.23" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/syohex/git-gutter-fringe.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1y77gjl0yznamdj0f55d418zb75k22izisjg7ikvrfsl2yfqf3pm"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-git-gutter" ,emacs-git-gutter)
+         ("emacs-fringe-helper" ,emacs-fringe-helper)))
+      (home-page "https://github.com/syohex/git-gutter-fringe")
+      (synopsis "See and manage hunks of text in a version control system")
+      (description
+       "This package extends @code{git-gutter} to use the fringe area of a
+window.")
+      (license license:gpl3+))))
+
 (define-public emacs-git-timemachine
   (package
     (name "emacs-git-timemachine")
-- 
cgit 1.4.1


From 100f3ccb736cdc77728af1f739ea82cc9da4b30c Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 13:55:21 -0700
Subject: gnu: Add emacs-apheleia.

* gnu/packages/emacs-xyz.scm (emacs-apheleia): New variable.
---
 gnu/packages/emacs-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 09ade9e493..9a80188699 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -2420,6 +2420,28 @@ display and behaviour is easily customisable.")
 window.")
       (license license:gpl3+))))
 
+(define-public emacs-apheleia
+  (package
+    (name "emacs-apheleia")
+    (version "1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/raxod502/apheleia.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "04pls7zahy4jfkikv6fvd9vfpm4glhyanmmkx79hgi9pwdv966rf"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/raxod502/apheleia")
+    (synopsis "Reformat buffer stably")
+    (description
+     "This package allows for a buffer to be reformatted without moving point,
+so that running a formatting tool like @code{Prettier} or @code{Black} upon
+saving won't move point back to the beginning of the buffer.")
+    (license license:gpl3+)))
+
 (define-public emacs-git-timemachine
   (package
     (name "emacs-git-timemachine")
-- 
cgit 1.4.1


From 914379a503e6e3124af7d80ce960641bf4862758 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 14:07:48 -0700
Subject: gnu: Add emacs-git-link.

* gnu/packages/emacs-xyz.scm (emacs-git-link): New variable.
---
 gnu/packages/emacs-xyz.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 9a80188699..2a0c4832ed 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -2420,6 +2420,31 @@ display and behaviour is easily customisable.")
 window.")
       (license license:gpl3+))))
 
+(define-public emacs-git-link
+  (package
+    (name "emacs-git-link")
+    (version "0.7.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/sshaw/git-link.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "04xa6lp8wkjb6zs096bf4sz124grcjj15xv1h009bmn2j95rggj6"))))
+    (build-system emacs-build-system)
+    (arguments
+     `(#:tests? #t
+       #:test-command '("make" "test")))
+    (home-page "https://github.com/sshaw/git-link")
+    (synopsis "Create links for files and commits in GitHub/GitLab/etc. repos")
+    (description
+     "@code{git-link} returns the URL for the current buffer's file location
+at the current line number or active region.  @code{git-link-commit} returns
+the URL for a commit.  URLs are added to the kill ring.")
+    (license license:gpl3+)))
+
 (define-public emacs-apheleia
   (package
     (name "emacs-apheleia")
-- 
cgit 1.4.1


From 88da011592a679776088b64b8d11575563c3f867 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Mon, 14 Oct 2019 23:41:24 +0200
Subject: packages: 'fold-available-packages' uses 'supported-package?'.

Fixes <https://bugs.gnu.org/37748>.
Reported by Marius Bakke <mbakke@fastmail.com>.

This is a followup to d2d63e20d5b981009b61bf416b4d7b516e8f1f34.

* gnu/packages.scm (fold-available-packages): Use 'supported-package?'
instead of (member ... (package-supported-systems ...)) to match what
'generate-package-cache' does.
---
 gnu/packages.scm | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages.scm b/gnu/packages.scm
index 6633631c1f..959777ff8f 100644
--- a/gnu/packages.scm
+++ b/gnu/packages.scm
@@ -228,9 +228,7 @@ package module."
                              #:outputs (package-outputs package)
                              #:location (package-location package)
                              #:supported?
-                             (->bool
-                              (member (%current-system)
-                                      (package-supported-systems package)))
+                             (->bool (supported-package? package))
                              #:deprecated?
                              (->bool
                               (package-superseded package))))
-- 
cgit 1.4.1


From ed3e7b7213ae7432ae49516ebb567b46c347fb48 Mon Sep 17 00:00:00 2001
From: Eric Bavier <bavier@member.fsf.org>
Date: Mon, 14 Oct 2019 20:33:19 -0500
Subject: gnu: pioneer: Update to 20190203.

* gnu/packages/games.scm (pioneer): Update to 20190203.
[build-system]: Switch from gnu- to cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[inputs]: Add glew.
[arguments]: Adjust configure-flags for cmake.  Remove phase modification.
---
 gnu/packages/games.scm | 26 +++++++++-----------------
 1 file changed, 9 insertions(+), 17 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 2ed505bbc4..a5b8ee9dd4 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2013 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
 ;;; Copyright © 2014, 2016 David Thompson <dthompson2@worcester.edu>
-;;; Copyright © 2014, 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014 Cyrill Schenkel <cyrill.schenkel@gmail.com>
 ;;; Copyright © 2014 Sylvain Beucler <beuc@beuc.net>
 ;;; Copyright © 2014, 2015, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
@@ -5514,7 +5514,7 @@ elements to achieve a simple goal in the most complex way possible.")
 (define-public pioneer
   (package
     (name "pioneer")
-    (version "20180203")
+    (version "20190203")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -5523,16 +5523,15 @@ elements to achieve a simple goal in the most complex way possible.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0hp2mf36kj2v93hka8m8lxw2qhmnjc62wjlpw7c7ix0r8xa01i6h"))))
-    (build-system gnu-build-system)
+                "1g34wvgyvz793dhm1k64kl82ib0cavkbg0f2p3fp05b457ycljff"))))
+    (build-system cmake-build-system)
     (native-inputs
-     `(("autoconf" ,autoconf)
-       ("automake" ,automake)
-       ("pkg-config" ,pkg-config)))
+     `(("pkg-config" ,pkg-config)))
     (inputs
      `(("assimp" ,assimp)
        ("curl" ,curl)
        ("freetype" ,freetype)
+       ("glew" ,glew)
        ("glu" ,glu)
        ("libpng" ,libpng)
        ("libsigc++" ,libsigc++)
@@ -5542,16 +5541,9 @@ elements to achieve a simple goal in the most complex way possible.")
        ("sdl" ,(sdl-union (list sdl2 sdl2-image)))))
     (arguments
      `(#:tests? #f                      ;tests are broken
-       #:configure-flags (list "--with-external-liblua"
-                               (string-append "PIONEER_DATA_DIR="
-                                              %output "/share/games/pioneer"))
-       #:phases (modify-phases %standard-phases
-                  (add-before 'bootstrap 'fix-lua-check
-                    (lambda _
-                      (substitute* "configure.ac"
-                        (("lua5.2")
-                         (string-append "lua-" ,(version-major+minor
-                                                 (package-version lua-5.2))))))))))
+       #:configure-flags (list "-DUSE_SYSTEM_LIBLUA:BOOL=YES"
+                               (string-append "-DPIONEER_DATA_DIR="
+                                              %output "/share/games/pioneer"))))
     (home-page "http://pioneerspacesim.net")
     (synopsis "Game of lonely space adventure")
     (description
-- 
cgit 1.4.1


From 19181820bc83b957224e63e540811ae165a2551d Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:15:49 +0200
Subject: gnu: python-crate: Update to 0.23.2.

* gnu/packages/databases.scm (python-crate): Update to 0.23.2.
---
 gnu/packages/databases.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 11568b509c..690f5a38ad 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3085,13 +3085,13 @@ NumPy, and other traditional Python scientific computing packages.")
 (define-public python-crate
   (package
     (name "python-crate")
-    (version "0.23.0")
+    (version "0.23.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "crate" version))
               (sha256
                (base32
-                "0s3s7yg4m2zflg9q96aibwb5hizsn10ql63fsj6h5z624qkavnlp"))))
+                "0ngmlvi320c5gsxab0s7qgq0ck4jdlcwvb6lbjhnfprafdp56vvx"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-urllib3" ,python-urllib3)))
-- 
cgit 1.4.1


From 373403bb6a4db46ed42f486a52caa0c89133cc9a Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:16:42 +0200
Subject: gnu: python-django-override-storage: Update to 0.1.6.

* gnu/packages/django.scm (python-django-override-storage): Update to 0.1.6.
---
 gnu/packages/django.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index 8e43447921..a8e0277e95 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -1008,14 +1008,13 @@ forms using your favorite CSS framework, without writing template code.")
 (define-public python-django-override-storage
   (package
     (name "python-django-override-storage")
-    (version "0.1.4")
+    (version "0.1.6")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "django-override-storage" version))
        (sha256
-        (base32
-         "0sqz1mh0yn8b1bzz2gr2azfiynljigm5gkzavp5n17zd3j2jg57x"))))
+        (base32 "022arq94lxnlyykn8wvfnkykhi2dldnsn93pa2i41na551i0wpiv"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-django" ,python-django)))
-- 
cgit 1.4.1


From cbb488d6f6a593cbe8db3f1608383dc2d40cd017 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:19:01 +0200
Subject: gnu: python-git-review: Update to 1.28.0.

* gnu/packages/openstack.scm (python-git-review): Update to 1.28.0.
---
 gnu/packages/openstack.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm
index 289b845ebc..c976d8aafb 100644
--- a/gnu/packages/openstack.scm
+++ b/gnu/packages/openstack.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2015 Cyril Roelandt <tipecaml@gmail.com>
 ;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017, 2019 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -853,17 +853,16 @@ permanence.")
 (define-public python-git-review
   (package
     (name "python-git-review")
-    (version "1.27.0")
+    (version "1.28.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "git-review" version))
        (sha256
-        (base32
-         "0xkllc8ql401sfqbjqf7i451mkgwgv0j4gysxdlyzqb27kfsyc3s"))))
+        (base32 "0nn17mfqvsa3ryjz53qjslmf60clc0vx2115kkj66h28p6vsnflf"))))
     (build-system python-build-system)
     (arguments
-     '(#:tests? #f ; tests require a running Gerrit server
+     '(#:tests? #f                     ; tests require a running Gerrit server
        #:phases
        (modify-phases %standard-phases
          (add-after 'install 'wrap-program
-- 
cgit 1.4.1


From 34ac6089e161adf4f316e25cfdab3651f0c1d55e Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:45:28 +0200
Subject: gnu: r-pkgbuild: Update to 1.0.6.

* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.6.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 101e446bcd..466e415aa8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1531,14 +1531,13 @@ processes.  Most of its code is based on the @code{psutil} Python package.")
 (define-public r-pkgbuild
   (package
     (name "r-pkgbuild")
-    (version "1.0.5")
+    (version "1.0.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pkgbuild" version))
        (sha256
-        (base32
-         "0y4i85axwajrk67h3w6fiqfm6wxmhn3dr240w5l2nvqg3ahpxc8q"))))
+        (base32 "0xnlz6ivhkbmncg9hfw5p69lm4rjy3wn5lyxmygxyf4rrfnnqwxx"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-callr" ,r-callr)
-- 
cgit 1.4.1


From 3d9a6b0512ec10956c31769c5b70aa611d2910ae Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:45:37 +0200
Subject: gnu: r-cmprsk: Update to 2.2-9.

* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-9.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 466e415aa8..3c97b083ae 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11126,14 +11126,13 @@ But it can also be used to do data analysis for small scale data sets.")
 (define-public r-cmprsk
   (package
     (name "r-cmprsk")
-    (version "2.2-8")
+    (version "2.2-9")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cmprsk" version))
        (sha256
-        (base32
-         "1nacbzx950ygaqgnj0949skhwpzar5i3xlscd44jsimk2gsppx6z"))))
+        (base32 "0xhgfg5b4i9skkaxp7gzkafgg5bqs5q1rp4hpw2jjmykg2nifn99"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-survival" ,r-survival)))
-- 
cgit 1.4.1


From 4f581bd068f2e0b3e1abaae351e9d039cb3b5793 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:49:05 +0200
Subject: gnu: zenity: Update to 3.32.0.

* gnu/packages/gnome.scm (zenity): Update to 3.32.0.
---
 gnu/packages/gnome.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index cd167cf395..52b7782b32 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -4995,7 +4995,7 @@ powerful general purpose text editor.")
 (define-public zenity
   (package
     (name "zenity")
-    (version "3.30.0")
+    (version "3.32.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
@@ -5003,7 +5003,7 @@ powerful general purpose text editor.")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1wipnp46pd238z9ck5rsckbaw7yla6c936fswq5w94k4c6bgcplr"))))
+                "15fdh8xfdhnwcynyh4byx3mrjxbyprqnwxzi7qn3g5wwaqryg1p7"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("gettext" ,gettext-minimal)
-- 
cgit 1.4.1


From 5958df042cf13881947eca74e94cd894d21463ef Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:49:14 +0200
Subject: gnu: zenity: Don't use NAME in source URI.

* gnu/packages/gnome.scm (zenity)[source]: Hard-code NAME.
---
 gnu/packages/gnome.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 52b7782b32..a442d57442 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -4998,9 +4998,9 @@ powerful general purpose text editor.")
     (version "3.32.0")
     (source (origin
               (method url-fetch)
-              (uri (string-append "mirror://gnome/sources/" name "/"
+              (uri (string-append "mirror://gnome/sources/zenity/"
                                   (version-major+minor version) "/"
-                                  name "-" version ".tar.xz"))
+                                  "zenity-" version ".tar.xz"))
               (sha256
                (base32
                 "15fdh8xfdhnwcynyh4byx3mrjxbyprqnwxzi7qn3g5wwaqryg1p7"))))
-- 
cgit 1.4.1


From f920a64a74e5f11469a90b9f7ecf8ecbbf844059 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 02:12:32 +0200
Subject: gnu: quaternion: Wrap with extra inputs.

* gnu/packages/messaging.scm (quaternion)[inputs]: Add qtquickcontrols2.
[arguments]: Use WRAP-QT-PROGRAM.
---
 gnu/packages/messaging.scm | 22 ++++++++++------------
 1 file changed, 10 insertions(+), 12 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index c69f76893a..03cd529d8a 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -1779,25 +1779,23 @@ QMatrixClient project.")
        ("qtdeclarative" ,qtdeclarative)
        ("qtmultimedia" ,qtmultimedia)
        ("qtquickcontrols" ,qtquickcontrols)
+       ("qtquickcontrols2" ,qtquickcontrols2)
        ("qtsvg" ,qtsvg)
        ("qttools" ,qttools)))
     (arguments
      `(#:tests? #f                      ; no tests
+       #:modules ((guix build cmake-build-system)
+                  (guix build qt-utils)
+                  (guix build utils))
+       #:imported-modules (,@%cmake-build-system-modules
+                           (guix build qt-utils))
        #:phases
        (modify-phases %standard-phases
          (add-after 'install 'wrap-program
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (wrap-program (string-append (assoc-ref outputs "out")
-                                          "/bin/quaternion")
-               `("QT_PLUGIN_PATH" ":" prefix
-                 (,(string-append (assoc-ref inputs "qtsvg")
-                                  "/lib/qt5/plugins")))
-               `("QML2_IMPORT_PATH" ":" prefix
-                 ,(map (lambda (label)
-                         (string-append (assoc-ref inputs label)
-                                        "/lib/qt5/qml"))
-                       '("qtdeclarative" "qtquickcontrols"))))
-             #t)))))
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (wrap-qt-program out "quaternion")
+               #t))))))
     (home-page "https://matrix.org/docs/projects/client/quaternion.html")
     (synopsis "Graphical client for the Matrix instant messaging protocol")
     (description "Quaternion is a Qt5 desktop client for the Matrix instant
-- 
cgit 1.4.1


From faa78e8850d7b025a13bd48e4ac0caefc77ba9cd Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Mon, 14 Oct 2019 23:59:12 +0200
Subject: gnu: xfsprogs: Update to 5.2.1.

* gnu/packages/linux.scm (xfsprogs): Update to 5.2.1.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 6cfe47f90c..ddbdd24fe4 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -5854,7 +5854,7 @@ IP addresses and routes, and configure IPsec.")
 (define-public xfsprogs
   (package
     (name "xfsprogs")
-    (version "4.20.0")
+    (version "5.2.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -5862,7 +5862,7 @@ IP addresses and routes, and configure IPsec.")
                     "xfsprogs-" version ".tar.gz"))
               (sha256
                (base32
-                "0ss0r6jlxxinf9fhpc0fgf7b89n9mzirpa85xxjmi1ix9l6cls6x"))))
+                "0q5xd4gb9g83h82mg68cx616ifzl8qkzzlgg5xna698117ph3wky"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f    ;kernel/user integration tests are in package "xfstests"
-- 
cgit 1.4.1


From c78778e779127f4ec2d49d6ad1ed8cb0f9e8b96e Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 00:45:40 +0200
Subject: gnu: xfsprogs: Install Python script to :python output.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/linux.scm (xfsprogs)[outputs]: Add ‘python’.
[arguments]: Move ‘xfs_scrub_all’ to :python.
[inputs]: Add python-wrapper to make it actually run.
---
 gnu/packages/linux.scm | 25 ++++++++++++++++++++-----
 1 file changed, 20 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index ddbdd24fe4..989d55f8aa 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -5864,15 +5864,30 @@ IP addresses and routes, and configure IPsec.")
                (base32
                 "0q5xd4gb9g83h82mg68cx616ifzl8qkzzlgg5xna698117ph3wky"))))
     (build-system gnu-build-system)
+    (outputs (list "out" "python"))
     (arguments
-     `(#:tests? #f    ;kernel/user integration tests are in package "xfstests"
-       #:phases (modify-phases %standard-phases
-                  (add-after 'install 'install-headers
-                    (lambda _
-                      (invoke "make" "install-dev"))))))
+     `(#:tests? #f   ; kernel/user integration tests are in package "xfstests"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'install 'separate-python-output
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out    (assoc-ref outputs "out"))
+                   (python (assoc-ref outputs "python")))
+               (for-each
+                (lambda (script)
+                  (mkdir-p (string-append python (dirname script)))
+                  (rename-file (string-append out script)
+                               (string-append python script)))
+                (list "/sbin/xfs_scrub_all"))
+               #t)))
+         (add-after 'install 'install-headers
+           (lambda _
+             (invoke "make" "install-dev"))))))
     (native-inputs
      `(("gettext" ,gettext-minimal)
        ("util-linux" ,util-linux)))
+    (inputs
+     `(("python" ,python-wrapper)))
     (home-page "https://xfs.wiki.kernel.org/")
     (synopsis "XFS file system tools")
     (description "This package provides commands to create and check XFS
-- 
cgit 1.4.1


From a7ba534ca638b00495b11ba5c8f681331c77bb14 Mon Sep 17 00:00:00 2001
From: Eric Bavier <bavier@member.fsf.org>
Date: Mon, 14 Oct 2019 23:12:48 -0500
Subject: gnu: clamav: Update to 0.102.0.

* gnu/packages/antivirus.scm (clamav): Update to 0.102.0.
---
 gnu/packages/antivirus.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/antivirus.scm b/gnu/packages/antivirus.scm
index 5127ba1741..a723e8bebe 100644
--- a/gnu/packages/antivirus.scm
+++ b/gnu/packages/antivirus.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2016, 2017, 2018, 2019 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2018 Christopher Baines <mail@cbaines.net>
 ;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
@@ -44,14 +44,14 @@
 (define-public clamav
   (package
     (name "clamav")
-    (version "0.101.2")
+    (version "0.102.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.clamav.net/downloads/production/"
                                   "clamav-" version ".tar.gz"))
               (sha256
                (base32
-                "0d3n4y8i5q594h4cjglmvpk4jd73r9ajpp1bvq5lr9zpdzgyn4ha"))
+                "1qdyj4r39266bmbsd2nwyspm20k9wh3c30awrg8c54y78s61izj8"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
cgit 1.4.1


From 2254373ebd7617bafb15bb1a93a3ed1db431a439 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 16:53:41 -0700
Subject: gnu: emacs-markdown-preview: Fix synopsis.

* gnu/packages/emacs-xyz.scm (emacs-markdown-preview): Fix synopsis.
---
 gnu/packages/emacs-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 2a0c4832ed..b068ae1ca1 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -18052,7 +18052,7 @@ url-encoded parameters, as well as web sockets.")
        ("emacs-web-server" ,emacs-web-server)))
     (arguments '(#:include '("\\.el$" "\\.html$")))
     (home-page "https://github.com/ancane/markdown-preview-mode")
-    (synopsis "Live web development in Emacs")
+    (synopsis "Preview Markdown files")
     (description "This package provides a minor mode for preview of Markdown
 files, and sends rendered Markdown to a web browser.")
     (license license:gpl3+)))
-- 
cgit 1.4.1


From 1695b6ca68fc68ea353e8537c2cab367186b9bad Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 16:56:22 -0700
Subject: gnu: emacs-ghub: Update to 3.2.0-2.e19cd86.

* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.2.0-2.e19cd86.
[propagated-inputs]: Add emacs-let-alist.
---
 gnu/packages/emacs-xyz.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index b068ae1ca1..86ecd574e6 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -566,8 +566,8 @@ deliver data to mobile and web apps.")
 
 (define-public emacs-ghub
   ;; We need a newer commit to avoid problems in emacs-forge.
-  (let ((commit "cf0b13aeba4df3798e49c205cac2d8fefd53a137")
-        (revision "1"))
+  (let ((commit "e19cd86ca4768a6d89285123933baa3f1460d696")
+        (revision "2"))
     (package
       (name "emacs-ghub")
       (version (git-version "3.2.0" revision commit))
@@ -579,7 +579,7 @@ deliver data to mobile and web apps.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "0fzayvcysk80vv4q332axcjf80x6gsnpcbl0svmpb017ii6wxhid"))))
+                  "1d6f8sxlsl0fpkzwbpnaw77d1a5pkg63zfvf6a2fxir357lbdizx"))))
       (build-system emacs-build-system)
       (arguments
        `(#:phases
@@ -591,6 +591,7 @@ deliver data to mobile and web apps.")
        `(("texinfo" ,texinfo)))
       (propagated-inputs
        `(("dash" ,emacs-dash)
+         ("emacs-let-alist" ,emacs-let-alist)
          ("treepy" ,emacs-treepy)))
       (home-page "https://github.com/magit/ghub")
       (synopsis "Emacs client libraries for the APIs of various Git forges")
-- 
cgit 1.4.1


From ddf6e9bdb14f709df8ec72317217d9128764a8e5 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 18:50:50 -0700
Subject: gnu: emacs-prescient: Update to 3.3-1.9505658.

* gnu/packages/emacs-xyz.scm (emacs-prescient): Update to 3.3-1.9505658.
---
 gnu/packages/emacs-xyz.scm | 46 +++++++++++++++++++++++++---------------------
 1 file changed, 25 insertions(+), 21 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 86ecd574e6..3d8aafd3e6 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -4938,29 +4938,33 @@ them easier to distinguish from other, less important buffers.")
     (license license:expat)))
 
 (define-public emacs-prescient
-  (package
-    (name "emacs-prescient")
-    (version "3.3")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/raxod502/prescient.el/")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1wqk1g8fjpcbpiz32k7arnisncd4n9zs84dn3qn9y8ggjzldqy91"))))
-    (build-system emacs-build-system)
-    (propagated-inputs
-     `(("emacs-company" ,emacs-company)
-       ("emacs-ivy" ,emacs-ivy)))
-    (home-page "https://github.com/raxod502/prescient.el/")
-    (synopsis "Library that sorts and filters lists of candidates")
-    (description
-     "This package provides a library for sorting and filtering, as well as
+  ;; XXX: emacs-ivy introduced a commit that disables sorting for counsel-M-x
+  ;; by default, so we use a non-release version ahead by one commit
+  (let ((commit "95056580ed743da92b05aaf86f943ee05600c28d")
+        (revision "1"))
+    (package
+      (name "emacs-prescient")
+      (version (git-version "3.3" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/raxod502/prescient.el/")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "06qxs8p66jr4gg9m1gd27v5may32f3n28la56cv4f4prinqyyfj7"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("emacs-company" ,emacs-company)
+         ("emacs-ivy" ,emacs-ivy)))
+      (home-page "https://github.com/raxod502/prescient.el/")
+      (synopsis "Library that sorts and filters lists of candidates")
+      (description
+       "This package provides a library for sorting and filtering, as well as
 extensions for @code{ivy-mode} and @code{company-mode} that make use of the
 library.")
-    (license license:gpl3+)))
+      (license license:gpl3+))))
 
 (define-public emacs-smartparens
   (package
-- 
cgit 1.4.1


From dbaa829ec680a2c19c8860a5e3f30c428f99f531 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Mon, 14 Oct 2019 21:40:16 -0700
Subject: gnu: emacs-magit: Add patch for compatibility with emacs-forge.

* gnu/local.mk (emacs-magit-format-author-margin.patch): Add patch.
* gnu/packages/emacs-xyz.scm: Add.
* gnu/packages/patches/emacs-magit-log-format-author-margin.patch: Add.
---
 gnu/local.mk                                       |  1 +
 gnu/packages/emacs-xyz.scm                         |  5 ++
 .../emacs-magit-log-format-author-margin.patch     | 72 ++++++++++++++++++++++
 3 files changed, 78 insertions(+)
 create mode 100644 gnu/packages/patches/emacs-magit-log-format-author-margin.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 6ec1bbf2e4..ba8cc1ee1f 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -794,6 +794,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/emacs-fix-scheme-indent-function.patch	\
   %D%/packages/patches/emacs-json-reformat-fix-tests.patch	\
   %D%/packages/patches/emacs-highlight-stages-add-gexp.patch	\
+  %D%/packages/patches/emacs-magit-log-format-author-margin.patch	\
   %D%/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch	\
   %D%/packages/patches/emacs-source-date-epoch.patch		\
   %D%/packages/patches/emacs-undohist-ignored.patch	\
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 3d8aafd3e6..ddaaa01727 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -281,6 +281,11 @@ on stdout instead of using a socket as the Emacsclient does.")
                 (sha256
                  (base32
                   "16qx0404l05q1m6w7y5j8ck1z5nfmpinm00w0p2yh1hn5zzwy6dd"))
+                ;; FIXME: emacs-forge uses a function defined in this patch,
+                ;; which is newer than the current commit.
+                (patches
+                 (search-patches
+                  "emacs-magit-log-format-author-margin.patch"))
                 (modules '((guix build utils)))
                 (snippet
                  '(begin
diff --git a/gnu/packages/patches/emacs-magit-log-format-author-margin.patch b/gnu/packages/patches/emacs-magit-log-format-author-margin.patch
new file mode 100644
index 0000000000..fc52157a32
--- /dev/null
+++ b/gnu/packages/patches/emacs-magit-log-format-author-margin.patch
@@ -0,0 +1,72 @@
+From 94914ca4690c0cff12d600a0c8ba6bfb3fb38dc5 Mon Sep 17 00:00:00 2001
+From: Jonas Bernoulli <jonas@bernoul.li>
+Date: Tue, 25 Jun 2019 21:44:32 +0200
+Subject: [PATCH] magit-log-format-author-margin: New function
+
+Split it from `magit-log-format-margin'.
+---
+ lisp/magit-log.el | 48 +++++++++++++++++++++++++----------------------
+ 1 file changed, 26 insertions(+), 22 deletions(-)
+
+diff --git a/lisp/magit-log.el b/lisp/magit-log.el
+index c8e6ef63..c0a79b19 100644
+--- a/lisp/magit-log.el
++++ b/lisp/magit-log.el
+@@ -1374,28 +1374,32 @@ The shortstat style is experimental and rather slow."
+   (when-let ((option (magit-margin-option)))
+     (if magit-log-margin-show-shortstat
+         (magit-log-format-shortstat-margin rev)
+-      (pcase-let ((`(,_ ,style ,width ,details ,details-width)
+-                   (or magit-buffer-margin
+-                       (symbol-value option))))
+-        (magit-make-margin-overlay
+-         (concat (and details
+-                      (concat (propertize (truncate-string-to-width
+-                                           (or author "")
+-                                           details-width
+-                                           nil ?\s (make-string 1 magit-ellipsis))
+-                                          'face 'magit-log-author)
+-                              " "))
+-                 (propertize
+-                  (if (stringp style)
+-                      (format-time-string
+-                       style
+-                       (seconds-to-time (string-to-number date)))
+-                    (pcase-let* ((abbr (eq style 'age-abbreviated))
+-                                 (`(,cnt ,unit) (magit--age date abbr)))
+-                      (format (format (if abbr "%%2i%%-%ic" "%%2i %%-%is")
+-                                      (- width (if details (1+ details-width) 0)))
+-                              cnt unit)))
+-                  'face 'magit-log-date)))))))
++      (magit-log-format-author-margin author date))))
++
++(defun magit-log-format-author-margin (author date &optional previous-line)
++  (pcase-let ((`(,_ ,style ,width ,details ,details-width)
++               (or magit-buffer-margin
++                   (symbol-value option))))
++    (magit-make-margin-overlay
++     (concat (and details
++                  (concat (propertize (truncate-string-to-width
++                                       (or author "")
++                                       details-width
++                                       nil ?\s (make-string 1 magit-ellipsis))
++                                      'face 'magit-log-author)
++                          " "))
++             (propertize
++              (if (stringp style)
++                  (format-time-string
++                   style
++                   (seconds-to-time (string-to-number date)))
++                (pcase-let* ((abbr (eq style 'age-abbreviated))
++                             (`(,cnt ,unit) (magit--age date abbr)))
++                  (format (format (if abbr "%%2i%%-%ic" "%%2i %%-%is")
++                                  (- width (if details (1+ details-width) 0)))
++                          cnt unit)))
++              'face 'magit-log-date))
++     previous-line)))
+ 
+ (defun magit-log-format-shortstat-margin (rev)
+   (magit-make-margin-overlay
+-- 
+2.23.0
+
-- 
cgit 1.4.1


From 062158cd7e89ccd40381ca96ce016c841507cedb Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Tue, 15 Oct 2019 07:28:36 +0200
Subject: gnu: guix: Update to 88da011.

* gnu/packages/package-management.scm (guix): Update to 88da011.
---
 gnu/packages/package-management.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 3b7d4b18dd..cd1548b42d 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -110,8 +110,8 @@
   ;; Note: the 'update-guix-package.scm' script expects this definition to
   ;; start precisely like this.
   (let ((version "1.0.1")
-        (commit "fc1fe722a05318ac05a71a0b127f231631e2843f")
-        (revision 7))
+        (commit "88da011592a679776088b64b8d11575563c3f867")
+        (revision 8))
     (package
       (name "guix")
 
@@ -127,7 +127,7 @@
                       (commit commit)))
                 (sha256
                  (base32
-                  "0yx19hxvmkr6ar65ym87xd83n6hz02mr7ibwis7i8wah85ypfq26"))
+                  "1dg71acxgn2kj6kqr1hpp4v5vg7f9vl7v4d8w8ykxv84brpw4sc8"))
                 (file-name (string-append "guix-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
-- 
cgit 1.4.1


From da414ec6873b0b912002babe4385fbae51676b43 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludovic.courtes@inria.fr>
Date: Tue, 15 Oct 2019 11:18:49 +0200
Subject: gnu: Add ucx.

* gnu/packages/fabric-management.scm (ucx): New variable.
---
 gnu/packages/fabric-management.scm | 50 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 83520f1a74..9b30b09df5 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -2,6 +2,7 @@
 ;;; Copyright © 2017 Dave Love <fx@gnu.org>
 ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -22,6 +23,7 @@
   #:use-module (guix packages)
   #:use-module (guix licenses)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix build-system gnu)
   #:use-module (gnu packages)
@@ -175,3 +177,51 @@ interface to this library is not guaranteed to be stable.")
 testing InfiniBand networks.")
     (home-page "https://www.openfabrics.org/downloads/ibutils/")
     (license bsd-2)))
+
+(define-public ucx
+  (package
+    (name "ucx")
+    (version "1.6.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/openucx/ucx.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0x3clvy716i7va4m4adgx6ihjsfnzrkdizhxz5v52944dkglpc8n"))))
+    (build-system gnu-build-system)
+    (arguments
+     '( ;; These are the flags found in 'contrib/configure-release'.
+       #:configure-flags (list "--enable-optimizations"
+                               "--disable-logging"
+                               "--disable-debug"
+                               "--disable-assertions"
+                               "--disable-params-check"
+
+                               (string-append "--with-rdmacm="
+                                              (assoc-ref %build-inputs
+                                                         "rdma-core")))))
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("libtool" ,libtool)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("numactl" ,numactl)
+       ("rdma-core" ,rdma-core)))
+    (synopsis "Optimized communication layer for message passing in HPC")
+    (description
+     "Unified Communication X (UCX) provides an optimized communication layer
+for message passing (MPI), portable global address space (PGAS) languages and
+run-time support libraries, as well as RPC and data-centric applications.
+
+UCX utilizes high-speed networks for inter-node communication, and shared
+memory mechanisms for efficient intra-node communication.")
+    (home-page "https://www.openucx.org/")
+    (license bsd-3)
+
+    ;; <ucm/bistro/bistro.h> lists only PowerPC64, AArch64, and x86_64 as
+    ;; supported.
+    (supported-systems '("x86_64-linux" "aarch64-linux"))))
-- 
cgit 1.4.1


From 8ba94edd8f411d68338d6d063dc09cda6858b748 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Tue, 15 Oct 2019 13:56:06 +0200
Subject: gnu: openmpi: Add dependency on UCX when supported.

* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally.
---
 gnu/packages/mpi.scm | 4 ++++
 1 file changed, 4 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 079ac34dbf..914f8e975e 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -185,6 +185,10 @@ bind processes, and much more.")
                   (member (%current-system) (package-supported-systems psm2)))
              `(("psm2" ,psm2))
              '())
+       ,@(if (and (not (%current-target-system))
+                  (member (%current-system) (package-supported-systems psm2)))
+             `(("ucx" ,ucx))
+             '())
        ("rdma-core" ,rdma-core)
        ("valgrind" ,valgrind)
        ("slurm" ,slurm)))              ;for PMI support (launching via "srun")
-- 
cgit 1.4.1


From 16e2e4f27b4d6c3d58b9ba029c923994cdf9c140 Mon Sep 17 00:00:00 2001
From: zimoun <zimon.toutoune@gmail.com>
Date: Tue, 8 Oct 2019 19:35:16 +0200
Subject: gnu: Add r-htqpcr.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/bioconductor.scm (r-htqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bb28493935..dc06bcb52d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2,6 +2,7 @@
 ;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2019 Simon Tournier <zimon.toutoune@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -6078,3 +6079,36 @@ attributable to individual, tissue, time point, or technical variables.  The
 package includes dream differential expression analysis for repeated
 measures.")
     (license license:gpl2+)))
+
+(define-public r-htqpcr
+  (package
+    (name "r-htqpcr")
+    (version "1.38.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "HTqPCR" version))
+       (sha256
+        (base32
+         "09xgj797f0qsbm4jswxw7ijjwa4jxg06bfkq66xfhbvascyyrhg7"))))
+    (properties `((upstream-name . "HTqPCR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-affy" ,r-affy)
+       ("r-biobase" ,r-biobase)
+       ("r-gplots" ,r-gplots)
+       ("r-limma" ,r-limma)
+       ("r-rcolorbrewer" ,r-rcolorbrewer)))
+    (home-page "http://www.ebi.ac.uk/bertone/software")
+    (synopsis "Automated analysis of high-throughput qPCR data")
+    (description
+     "Analysis of Ct values from high throughput quantitative real-time
+PCR (qPCR) assays across multiple conditions or replicates.  The input data
+can be from spatially-defined formats such ABI TaqMan Low Density Arrays or
+OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad
+Laboratories; conventional 96- or 384-well plates; or microfluidic devices
+such as the Dynamic Arrays from Fluidigm Corporation.  HTqPCR handles data
+loading, quality assessment, normalization, visualization and parametric or
+non-parametric testing for statistical significance in Ct values between
+features (e.g.  genes, microRNAs).")
+    (license license:artistic2.0)))
-- 
cgit 1.4.1


From 86fb2c63bede56b164cf187ce36700fc8f48d41b Mon Sep 17 00:00:00 2001
From: zimoun <zimon.toutoune@gmail.com>
Date: Tue, 8 Oct 2019 19:35:18 +0200
Subject: gnu: Add r-unifiedwmwqpcr.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index dc06bcb52d..2187572117 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6112,3 +6112,28 @@ loading, quality assessment, normalization, visualization and parametric or
 non-parametric testing for statistical significance in Ct values between
 features (e.g.  genes, microRNAs).")
     (license license:artistic2.0)))
+
+(define-public r-unifiedwmwqpcr
+  (package
+    (name "r-unifiedwmwqpcr")
+    (version "1.20.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "unifiedWMWqPCR" version))
+       (sha256
+        (base32
+         "10j70bp5y1x2prz2iagqmwf04y79yqinq08wz4ilh8wggb9f7l8a"))))
+    (properties
+     `((upstream-name . "unifiedWMWqPCR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-htqpcr" ,r-htqpcr)))
+    (home-page "https://bioconductor.org/packages/unifiedWMWqPCR")
+    (synopsis "Unified Wilcoxon-Mann Whitney Test for differential expression in qPCR data")
+    (description
+     "This packages implements the unified Wilcoxon-Mann-Whitney Test for qPCR
+data.  This modified test allows for testing differential expression in qPCR
+data.")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From 93beace0e096ba28989a7ed18ffa731e560a9c77 Mon Sep 17 00:00:00 2001
From: David Wilson <david@daviwil.com>
Date: Sat, 12 Oct 2019 09:07:11 -0700
Subject: gnu: Add gnome-mahjongg.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/gnome.scm (gnome-mahjongg) New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/gnome.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index a442d57442..81cb2fb37f 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -41,6 +41,7 @@
 ;;; Copyright © 2019 Jonathan Frederickson <jonathan@terracrypt.net>
 ;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2019 Martin Becze <mjbecze@riseup.net>
+;;; Copyright © 2019 David Wilson <david@daviwil.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -8395,3 +8396,40 @@ access library.  It only implements the core plumbing functions, not really the
 higher level porcelain stuff.")
     (home-page "https://wiki.gnome.org/Projects/Libgit2-glib")
     (license license:gpl2+)))
+
+(define-public gnome-mahjongg
+  (package
+    (name "gnome-mahjongg")
+    (version "3.35.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://gitlab.gnome.org/GNOME/gnome-mahjongg.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "019a66a4m5w4kkb0sm6gxj0wi54n06zdxdlmyqw7h8kbakjizv7l"))))
+    (build-system meson-build-system)
+    (arguments
+     `(#:glib-or-gtk? #t))
+    (native-inputs
+     `(("appstream-glib" ,appstream-glib)
+       ("gettext" ,gettext-minimal)
+       ("glib:bin" ,glib "bin") ;; For glib-compile-resources
+       ("gtk+" ,gtk+ "bin")     ;; For gtk-update-icon-cache
+       ("itstool" ,itstool)
+       ("pkg-config" ,pkg-config)
+       ("vala" ,vala)))
+    (propagated-inputs
+     `(("dconf" ,dconf)))
+    (inputs
+     `(("glib" ,glib)
+       ("gtk+" ,gtk+)
+       ("librsvg" ,librsvg)))
+    (synopsis "Mahjongg tile-matching game")
+    (description "GNOME Mahjongg is a game based on the classic Chinese
+tile-matching game Mahjong.  It features multiple board layouts, tile themes,
+and a high score table.")
+    (home-page "https://wiki.gnome.org/Apps/Mahjongg")
+    (license license:gpl2+)))
-- 
cgit 1.4.1


From ba42a6bfc413f0398a3f33a5580059896debd69f Mon Sep 17 00:00:00 2001
From: Tanguy Le Carrour <tanguy@bioneland.org>
Date: Tue, 15 Oct 2019 09:37:59 +0200
Subject: gnu: Add python-jinja2-time.

* gnu/packages/python-xyz.scm (python-jinja2-time): New public variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
---
 gnu/packages/python-xyz.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d555512ed7..f924aafc92 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -66,6 +66,7 @@
 ;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com>
 ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org>
 ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
+;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2495,6 +2496,30 @@ written in pure Python.")
 (define-public python2-jinja2
   (package-with-python2 python-jinja2))
 
+(define-public python-jinja2-time
+  (package
+    (name "python-jinja2-time")
+    (version "0.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "jinja2-time" version))
+       (sha256
+        (base32
+         "0h0dr7cfpjnjj8bgl2vk9063a53649pn37wnlkd8hxjy656slkni"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-arrow" ,python-arrow)
+       ("python-jinja2" ,python-jinja2)))
+    (home-page
+     "https://github.com/hackebrot/jinja2-time")
+    (synopsis "Jinja2 Extension for Dates and Times")
+    (description
+     "This package provides an extension for the template engine Jinja2.  It
+adds a 'now' tag providing a convenient access to the arrow.now() API from
+templates.  A format string can be provided to control the output.")
+    (license license:expat)))
+
 (define-public python-pystache
   (package
     (name "python-pystache")
-- 
cgit 1.4.1


From 6830120e5822a4f3bb6927613dd624ef3d565980 Mon Sep 17 00:00:00 2001
From: Tanguy Le Carrour <tanguy@bioneland.org>
Date: Tue, 15 Oct 2019 09:38:24 +0200
Subject: gnu: Add python-poyo.

* gnu/packages/python-xyz.scm (python-poyo): New public variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
---
 gnu/packages/python-xyz.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f924aafc92..145de90d8e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1572,6 +1572,27 @@ existing ones.")
                    ;; Tests don't work with python2.
                    #:tests? #f)))))
 
+(define-public python-poyo
+  (package
+    (name "python-poyo")
+    (version "0.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "poyo" version))
+       (sha256
+        (base32
+         "1pflivs6j22frz0v3dqxnvc8yb8fb52g11lqr88z0i8cg2m5csg2"))))
+    (build-system python-build-system)
+    (home-page "https://github.com/hackebrot/poyo")
+    (synopsis "Lightweight YAML Parser for Python")
+    (description
+     "This package provides a lightweight YAML Parser for Python.  It supports
+only a chosen subset of the YAML format that is required to parse cookiecutter
+user configuration files.  It does not have support for serializing into YAML
+and is not compatible with JSON.")
+    (license license:expat)))
+
 (define-public scons
   (package
     (name "scons")
-- 
cgit 1.4.1


From b2b23d124271c4578bfab15ebf967c46b4c6b3dd Mon Sep 17 00:00:00 2001
From: Tanguy Le Carrour <tanguy@bioneland.org>
Date: Tue, 15 Oct 2019 09:40:59 +0200
Subject: gnu: Add python-whichcraft.

* gnu/packages/python-xyz.scm (python-whichcraft): New public variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
---
 gnu/packages/python-xyz.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 145de90d8e..3699a4ced5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9127,6 +9127,27 @@ server with very acceptable performance.")
 (define-public python2-waitress
   (package-with-python2 python-waitress))
 
+(define-public python-whichcraft
+  (package
+    (name "python-whichcraft")
+    (version "0.6.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "whichcraft" version))
+       (sha256
+        (base32
+         "11yfkzyplizdgndy34vyd5qlmr1n5mxis3a3svxmx8fnccdvknxc"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python-pytest" ,python-pytest)))
+    (home-page "https://github.com/pydanny/whichcraft")
+    (synopsis "Cross-platform cross-python shutil.which functionality")
+    (description
+     "This package provides a shim of the shutil.which function that's
+designed to work across multiple versions of Python.")
+    (license license:bsd-3)))
+
 (define-public python-pyquery
   (package
     (name "python-pyquery")
-- 
cgit 1.4.1


From 1133ca44608c0df15e1a9888ad026e13a6eca6f7 Mon Sep 17 00:00:00 2001
From: Tanguy Le Carrour <tanguy@bioneland.org>
Date: Tue, 15 Oct 2019 09:41:28 +0200
Subject: gnu: Add python-cookiecutter.

* gnu/packages/python-xyz.scm (python-cookiecutter): New public variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
---
 gnu/packages/python-xyz.scm | 36 ++++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3699a4ced5..4ea426d0d7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9148,6 +9148,42 @@ server with very acceptable performance.")
 designed to work across multiple versions of Python.")
     (license license:bsd-3)))
 
+(define-public python-cookiecutter
+  (package
+    (name "python-cookiecutter")
+    (version "1.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "cookiecutter" version))
+       (sha256
+        (base32
+         "0glsvaz8igi2wy1hsnhm9fkn6560vdvdixzvkq6dn20z3hpaa5hk"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python-freezegun" ,python-freezegun)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-catchlog" ,python-pytest-catchlog)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-pytest-mock" ,python-pytest-mock)))
+    (propagated-inputs
+     `(("python-binaryornot" ,python-binaryornot)
+       ("python-click" ,python-click)
+       ("python-future" ,python-future)
+       ("python-jinja2" ,python-jinja2)
+       ("python-jinja2-time" ,python-jinja2-time)
+       ("python-poyo" ,python-poyo)
+       ("python-requests" ,python-requests)
+       ("python-whichcraft" ,python-whichcraft)))
+    (home-page "https://github.com/audreyr/cookiecutter")
+    (synopsis
+     "Command-line utility that creates projects from project templates")
+    (description
+     "This package provides a command-line utility that creates projects from
+project templates, e.g. creating a Python package project from a Python package
+project template.")
+    (license license:bsd-3)))
+
 (define-public python-pyquery
   (package
     (name "python-pyquery")
-- 
cgit 1.4.1


From 559e06b61c66af8cfee8fdf9bc356466ad55486e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 15 Oct 2019 16:04:48 +0200
Subject: gnu: patchmatrix: Update to 0.16.0.

* gnu/packages/music.scm (patchmatrix): Update to 0.16.0.
[arguments]: Remove custom phase make-gzip-archive-writable.
---
 gnu/packages/music.scm | 59 ++++++++++++++++++++------------------------------
 1 file changed, 24 insertions(+), 35 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 250f3136bb..22db0cf604 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -4053,43 +4053,32 @@ notation and includes basic support for digital audio.")
     (license license:gpl2)))
 
 (define-public patchmatrix
-  ;; There have been no releases for more than a year.
-  (let ((commit "a0b0b1e791f4574d5abd059cfe1819c71e8b18d5")
-        (revision "1"))
-    (package
-      (name "patchmatrix")
-      (version (git-version "0.12.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/OpenMusicKontrollers/patchmatrix.git")
-                      (commit commit)))
-                (file-name (string-append "patchmatrix-" version "-checkout"))
-                (sha256
-                 (base32
-                  "0pph4ra7aci3rbpqvvr564pi16vxrk448bmvp8985cd9lbjlrp3m"))))
-      (build-system meson-build-system)
-      (arguments
-       '(#:tests? #f          ; no test target
-         #:phases
-         (modify-phases %standard-phases
-           (add-before 'reset-gzip-timestamps 'make-gzip-archive-writable
-             (lambda* (#:key outputs #:allow-other-keys)
-               (map make-file-writable
-                    (find-files (assoc-ref outputs "out") ".*\\.gz$"))
-               #t)))))
-      (inputs
-       `(("jack" ,jack-1)
-         ("lv2" ,lv2)
-         ("mesa" ,mesa)))
-      (native-inputs
-       `(("pkg-config" ,pkg-config)))
-      (home-page "https://github.com/OpenMusicKontrollers/patchmatrix")
-      (synopsis "Simple JACK patch bay")
-      (description "PatchMatrix is a patch bay for the JACK audio connection
+  (package
+    (name "patchmatrix")
+    (version "0.16.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/OpenMusicKontrollers/patchmatrix.git")
+                    (commit version)))
+              (file-name (git-file-name "patchmatrix" version))
+              (sha256
+               (base32
+                "020vp7zzxxzzjfic57vkpg68dm8hi98ilr1bj88xjsv6i47xmjbn"))))
+    (build-system meson-build-system)
+    (arguments '(#:tests? #f))          ; no test target
+    (inputs
+     `(("jack" ,jack-1)
+       ("lv2" ,lv2)
+       ("mesa" ,mesa)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "https://github.com/OpenMusicKontrollers/patchmatrix")
+    (synopsis "Simple JACK patch bay")
+    (description "PatchMatrix is a patch bay for the JACK audio connection
 kit.  It provides a patch bay in flow matrix style for audio, MIDI, CV, and
 OSC connections.")
-      (license license:artistic2.0))))
+    (license license:artistic2.0)))
 
 (define-public sorcer
   (package
-- 
cgit 1.4.1


From be1c4b079e15a69193e0c2b4a6dd93d01934b8c6 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 15:51:50 +0200
Subject: gnu: network-manager-applet: Build libnm-gtk.

Fixes network-manager-openvpn <https://issues.guix.gnu.org/issue/37759>.

* gnu/packages/gnome.scm (network-manager-applet)[arguments]:
Set libnm_gtk=true in #:configure-flags.
---
 gnu/packages/gnome.scm | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 81cb2fb37f..20c050f984 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -5487,6 +5487,7 @@ services.")
 (define-public network-manager-openvpn
   (package
     (name "network-manager-openvpn")
+    ;; Updating?  Check whether network-manager-applet still needs libnm_gtk.
     (version "1.8.4")
     (source (origin
               (method url-fetch)
@@ -5671,7 +5672,10 @@ Cisco's AnyConnect SSL VPN.")
                 "1gzvz4wfqfsfclqg56y954al8x6fmz71cnxlx1i4nqr7a25bp2qi"))))
     (build-system meson-build-system)
     (arguments
-     '(#:glib-or-gtk? #t))
+     '(#:configure-flags
+       ;; ‘Nobody should be using this’ but network-manager-openvpn 1.8.10 does.
+       (list "-Dlibnm_gtk=true")
+       #:glib-or-gtk? #t))
     (native-inputs
      `(("intltool" ,intltool)
        ("glib:bin" ,glib "bin") ; for glib-compile-resources, etc.
-- 
cgit 1.4.1


From 3df63444f3542d32265990e6c91950bb0625ffec Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 15:52:30 +0200
Subject: gnu: network-manager-applet: Don't use NAME in source URI.

* gnu/packages/gnome.scm (network-manager-applet)[source]: Hard-code NAME.
---
 gnu/packages/gnome.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 20c050f984..71a8be8a4e 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -5664,9 +5664,9 @@ Cisco's AnyConnect SSL VPN.")
     (version "1.8.24")
     (source (origin
               (method url-fetch)
-              (uri (string-append "mirror://gnome/sources/" name "/"
+              (uri (string-append "mirror://gnome/sources/network-manager-applet/"
                                   (version-major+minor version) "/"
-                                  name "-" version ".tar.xz"))
+                                  "network-manager-applet-" version ".tar.xz"))
               (sha256
                (base32
                 "1gzvz4wfqfsfclqg56y954al8x6fmz71cnxlx1i4nqr7a25bp2qi"))))
-- 
cgit 1.4.1


From 7d87eede5d7b309d27556fc1614ceba98be2f577 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 15:52:39 +0200
Subject: gnu: network-manager-openvpn: Update to 1.8.10.

* gnu/packages/gnome.scm (network-manager-openvpn): Update to 1.8.10.
---
 gnu/packages/gnome.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 71a8be8a4e..f17bd941cd 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -5488,7 +5488,7 @@ services.")
   (package
     (name "network-manager-openvpn")
     ;; Updating?  Check whether network-manager-applet still needs libnm_gtk.
-    (version "1.8.4")
+    (version "1.8.10")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -5497,7 +5497,7 @@ services.")
                     "/NetworkManager-openvpn-" version ".tar.xz"))
               (sha256
                (base32
-                "0gyrv46h9k17qym48qacq4zpxbap6hi17shn921824zm98m2bdvr"))))
+                "1vri49yff4lj13dnzkpq9nx3a4z1bmbrv807r151plj8m1mwhg5g"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--enable-absolute-paths" "--localstatedir=/var")
-- 
cgit 1.4.1


From 8fcba3be282b4df60eec99338e5afee061d87242 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Mon, 14 Oct 2019 20:50:47 +0200
Subject: gnu: ruby-concurrent: Do not use unstable source tarball.

* gnu/packages/ruby.scm (ruby-concurrent)[source]: Switch to GIT-FETCH.
---
 gnu/packages/ruby.scm | 13 ++++++-------
 1 file changed, 6 insertions(+), 7 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 7d736c7c27..bb8a9d535b 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -7173,17 +7173,16 @@ call.")
     (version "1.0.5")
     (source
      (origin
-       (method url-fetch)
+       (method git-fetch)
        ;; Download from GitHub because the rubygems version does not contain
        ;; Rakefile.
-       (uri (string-append
-             "https://github.com/ruby-concurrency/concurrent-ruby/archive/v"
-             version
-             ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (uri (git-reference
+             (url "https://github.com/ruby-concurrency/concurrent-ruby")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "0qhv0qzsby4iijgwa4s9r88zj8123pmyz1dwaqzdk57xgqll9pny"))
+         "1618ald6mhz86hapgw9hs3cvb518k48fk6fxficdrdg3zcx8n302"))
        ;; Exclude failing test reported at
        ;; https://github.com/ruby-concurrency/concurrent-ruby/issues/534
        (patches (search-patches "ruby-concurrent-ignore-broken-test.patch"
-- 
cgit 1.4.1


From 1007640a63de6749a93e94a2751f66af56b01d07 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Mon, 14 Oct 2019 20:52:28 +0200
Subject: gnu: ruby-concurrent: Update to 1.1.5.

* gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch,
gnu/packages/patches/ruby-concurrent-test-arm.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ruby.scm (ruby-concurrent): Update to 1.1.5.
[source](patches): Remove.
[arguments]: Set #:test-target to "ci".  Remove obsolete phases.  Remove
dependencies on 'rake_compiler_dock' and concurrent_ruby.jar.
---
 gnu/local.mk                                       |  2 --
 .../ruby-concurrent-ignore-broken-test.patch       | 16 ---------
 .../patches/ruby-concurrent-test-arm.patch         | 36 -------------------
 gnu/packages/ruby.scm                              | 42 ++++++++++++++--------
 4 files changed, 27 insertions(+), 69 deletions(-)
 delete mode 100644 gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch
 delete mode 100644 gnu/packages/patches/ruby-concurrent-test-arm.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index ba8cc1ee1f..3fbfe0f2bb 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1302,8 +1302,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/rtags-separate-rct.patch			\
   %D%/packages/patches/racket-store-checksum-override.patch	\
   %D%/packages/patches/ruby-rubygems-276-for-ruby24.patch	\
-  %D%/packages/patches/ruby-concurrent-ignore-broken-test.patch	\
-  %D%/packages/patches/ruby-concurrent-test-arm.patch		\
   %D%/packages/patches/ruby-rack-ignore-failing-test.patch      \
   %D%/packages/patches/ruby-safe-yaml-add-require-time.patch	\
   %D%/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch\
diff --git a/gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch b/gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch
deleted file mode 100644
index 4e801c3225..0000000000
--- a/gnu/packages/patches/ruby-concurrent-ignore-broken-test.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-This test appears to fail in GNU Guix and elsewhere.  It has been reported
-upstream at https://github.com/puma/puma/issues/995
-
-diff --git a/spec/concurrent/channel_spec.rb b/spec/concurrent/channel_spec.rb
-index d70fba8..4f29a8b 100644
---- a/spec/concurrent/channel_spec.rb
-+++ b/spec/concurrent/channel_spec.rb
-@@ -598,7 +598,7 @@ module Concurrent
-           }.to raise_error(ArgumentError)
-         end
- 
--        it 'loops until the block returns false' do
-+        xit 'loops until the block returns false' do
-           actual = 0
-           expected = 3
-           latch = Concurrent::CountDownLatch.new(expected)
diff --git a/gnu/packages/patches/ruby-concurrent-test-arm.patch b/gnu/packages/patches/ruby-concurrent-test-arm.patch
deleted file mode 100644
index 06d5657814..0000000000
--- a/gnu/packages/patches/ruby-concurrent-test-arm.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Work around two test suite failures on ARM:
-
-  https://github.com/ruby-concurrency/concurrent-ruby/issues/547
-
-The regexps here assume addresses like "0x1234" but on ARM (32-bit)
-we get something like "0x-7db1e810" (notice the dash).
-
-diff --git a/spec/concurrent/edge/promises_spec.rb b/spec/concurrent/edge/promises_spec.rb
-index 727210f..149f7cd 100644
---- a/spec/concurrent/edge/promises_spec.rb
-+++ b/spec/concurrent/edge/promises_spec.rb
-@@ -371,9 +371,9 @@ describe 'Concurrent::Promises' do
-       four  = three.delay.then(&:succ)
- 
-       # meaningful to_s and inspect defined for Future and Promise
--      expect(head.to_s).to match /<#Concurrent::Promises::Future:0x[\da-f]+ pending>/
-+      expect(head.to_s).to match /<#Concurrent::Promises::Future:0x-?[\da-f]+ pending>/
-       expect(head.inspect).to(
--          match(/<#Concurrent::Promises::Future:0x[\da-f]+ pending>/))
-+          match(/<#Concurrent::Promises::Future:0x-?[\da-f]+ pending>/))
- 
-       # evaluates only up to three, four is left unevaluated
-       expect(three.value!).to eq 3
-diff --git a/spec/concurrent/map_spec.rb b/spec/concurrent/map_spec.rb
-index c4050be..0a9095d 100644
---- a/spec/concurrent/map_spec.rb
-+++ b/spec/concurrent/map_spec.rb
-@@ -794,7 +794,7 @@ module Concurrent
-     end
- 
-     it '#inspect' do
--      regexp = /\A#<Concurrent::Map:0x[0-9a-f]+ entries=[0-9]+ default_proc=.*>\Z/i
-+      regexp = /\A#<Concurrent::Map:0x-?[0-9a-f]+ entries=[0-9]+ default_proc=.*>\Z/i
-       expect(Concurrent::Map.new.inspect).to match(regexp)
-       expect((Concurrent::Map.new {}).inspect).to match(regexp)
-       map = Concurrent::Map.new
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index bb8a9d535b..d5f7fa59c6 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -6,7 +6,7 @@
 ;;; Copyright © 2015, 2019 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017 ng0 <ng0@n0.is>
-;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2017, 2019 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
@@ -7170,7 +7170,7 @@ call.")
 (define-public ruby-concurrent
   (package
     (name "ruby-concurrent")
-    (version "1.0.5")
+    (version "1.1.5")
     (source
      (origin
        (method git-fetch)
@@ -7182,14 +7182,10 @@ call.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1618ald6mhz86hapgw9hs3cvb518k48fk6fxficdrdg3zcx8n302"))
-       ;; Exclude failing test reported at
-       ;; https://github.com/ruby-concurrency/concurrent-ruby/issues/534
-       (patches (search-patches "ruby-concurrent-ignore-broken-test.patch"
-                                "ruby-concurrent-test-arm.patch"))))
+         "193q2k47vk7qdvv9hlhmmdxgy91xl4imapyk1ijdg9vgf46knyzj"))))
     (build-system ruby-build-system)
     (arguments
-     `(#:test-target "spec"
+     `(#:test-target "ci"
        #:phases
        (modify-phases %standard-phases
          (add-before 'replace-git-ls-files 'remove-extra-gemspecs
@@ -7199,15 +7195,31 @@ call.")
              (delete-file "concurrent-ruby-edge.gemspec")
              (delete-file "concurrent-ruby-ext.gemspec")
              #t))
-         (add-before 'build 'replace-git-ls-files2
+         (replace 'replace-git-ls-files
+           (lambda _
+             ;; XXX: The default substitution made by this phase is not fully
+             ;; compatible with "git ls-files".  The latter produces file names
+             ;; such as "lib/foo", whereas ruby-build-system uses "find . [...]"
+             ;; which gives "./lib/foo".  That difference in turn breaks the
+             ;; comparison against a glob pattern in this script.
+             (substitute* "concurrent-ruby.gemspec"
+               (("git ls-files") "find * -type f | sort"))
+             #t))
+         (add-before 'build 'remove-jar-from-gemspec
            (lambda _
-             (substitute* "support/file_map.rb"
-               (("git ls-files") "find * |sort"))
+             ;; The gemspec wants to include a JAR file that we do not build
+             ;; nor need.
+             (substitute* "concurrent-ruby.gemspec"
+               (("'lib/concurrent/concurrent_ruby.jar'")
+                ""))
+             #t))
+         (add-before 'build 'remove-rake_compiler_dock-dependency
+           (lambda _
+             ;; This library is only used when building for non-MRI targets.
+             (substitute* "Rakefile"
+               (("require 'rake_compiler_dock'")
+                ""))
              #t))
-         (add-before 'check 'rake-compile
-           ;; Fix the test error described at
-           ;; https://github.com/ruby-concurrency/concurrent-ruby/pull/408
-           (lambda _ (invoke "rake" "compile")))
          (add-before 'check 'remove-timecop-dependency
            ;; Remove timecop-dependent tests as having timecop as a depedency
            ;; causes circular depedencies.
-- 
cgit 1.4.1


From d5329de9ac776087153025b0f407d406a86970b3 Mon Sep 17 00:00:00 2001
From: "tanguy@bioneland.org" <tanguy@bioneland.org>
Date: Mon, 14 Oct 2019 10:10:27 +0200
Subject: gnu: polybar: Update to 3.4.0.

* gnu/packages/wm.scm (polybar): Update to 3.4.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/wm.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 6cecc06130..7a68c5c335 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -23,6 +23,7 @@
 ;;; Copyright © 2019 Gábor Boskovits <boskovits@gmail.com>
 ;;; Copyright © 2019 Kyle Andrews <kyle.c.andrews@gmail.com>
 ;;; Copyright © 2019 Ingo Ruhnke <grumbel@gmail.com>
+;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -1194,14 +1195,14 @@ its size
 (define-public polybar
   (package
     (name "polybar")
-    (version "3.3.1")
+    (version "3.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://github.com/jaagr/polybar/releases/"
                            "download/" version "/polybar-" version ".tar"))
        (sha256
-        (base32 "0758na059vpgnsrcdrxmh9wsahs80wnmizb9g7bmixlrkxr2m65h"))
+        (base32 "06yd9ffak53qbhpw35xh422v2lhjh23zdbrh81cynwks5pr9i839"))
        (file-name (string-append name "-" version ".tar"))))
     (build-system cmake-build-system)
     (arguments
-- 
cgit 1.4.1


From 44b7352073eb6304179e0aa106f381dc8702c9e0 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 21:34:27 +0300
Subject: gnu: polybar: Update source uri.

* gnu/packages/wm.scm (polybar)[source]: Update source uri. Remove
file-name.
---
 gnu/packages/wm.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 7a68c5c335..cd5655f1d1 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -1199,11 +1199,10 @@ its size
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "https://github.com/jaagr/polybar/releases/"
+       (uri (string-append "https://github.com/polybar/polybar/releases/"
                            "download/" version "/polybar-" version ".tar"))
        (sha256
-        (base32 "06yd9ffak53qbhpw35xh422v2lhjh23zdbrh81cynwks5pr9i839"))
-       (file-name (string-append name "-" version ".tar"))))
+        (base32 "06yd9ffak53qbhpw35xh422v2lhjh23zdbrh81cynwks5pr9i839"))))
     (build-system cmake-build-system)
     (arguments
      ;; Test is disabled because it requires downloading googletest from the
-- 
cgit 1.4.1


From 005c2ccf2bbd165fb12bbb285ce2849dc05ca926 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 21:51:07 +0300
Subject: gnu: polybar: Add jsoncpp.

* gnu/packages/wm.scm (polybar)[inputs]: Add jsoncpp.
---
 gnu/packages/wm.scm | 1 +
 1 file changed, 1 insertion(+)

(limited to 'gnu')

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index cd5655f1d1..05642cf450 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -1212,6 +1212,7 @@ its size
      `(("alsa-lib" ,alsa-lib)
        ("cairo" ,cairo)
        ("i3-wm" ,i3-wm)
+       ("jsoncpp" ,jsoncpp)
        ("libmpdclient" ,libmpdclient)
        ("libnl" ,libnl)
        ("libxcb" ,libxcb)
-- 
cgit 1.4.1


From 40cad6b956ad250eaa1b3bd259d048e152ce2674 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 21:55:09 +0300
Subject: gnu: wm.scm: Sort module imports.

* gnu/packages/wm.scm: Sort module imports.
---
 gnu/packages/wm.scm | 65 ++++++++++++++++++++++++++---------------------------
 1 file changed, 32 insertions(+), 33 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 05642cf450..7c573337d4 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -43,57 +43,56 @@
 (define-module (gnu packages wm)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
-  #:use-module (gnu packages)
-  #:use-module (gnu packages linux)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system haskell)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system python)
-  #:use-module (gnu packages haskell-check)
-  #:use-module (gnu packages haskell-web)
-  #:use-module (gnu packages haskell-xyz)
+  #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
-  #:use-module (gnu packages bison)
-  #:use-module (gnu packages gawk)
   #:use-module (gnu packages base)
-  #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages pulseaudio)
-  #:use-module (gnu packages xorg)
-  #:use-module (gnu packages xdisorg)
-  #:use-module (gnu packages documentation)
-  #:use-module (gnu packages xml)
-  #:use-module (gnu packages m4)
+  #:use-module (gnu packages bison)
   #:use-module (gnu packages docbook)
-  #:use-module (gnu packages image)
-  #:use-module (gnu packages pcre)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages gtk)
-  #:use-module (gnu packages libevent)
-  #:use-module (gnu packages fribidi)
-  #:use-module (gnu packages maths)
-  #:use-module (gnu packages web)
+  #:use-module (gnu packages documentation)
   #:use-module (gnu packages fontutils)
   #:use-module (gnu packages freedesktop)
+  #:use-module (gnu packages fribidi)
+  #:use-module (gnu packages gawk)
+  #:use-module (gnu packages gl)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gperf)
+  #:use-module (gnu packages gtk)
+  #:use-module (gnu packages haskell-check)
+  #:use-module (gnu packages haskell-web)
+  #:use-module (gnu packages haskell-xyz)
+  #:use-module (gnu packages image)
   #:use-module (gnu packages imagemagick)
-  #:use-module (gnu packages lua)
+  #:use-module (gnu packages libevent)
   #:use-module (gnu packages linux)
-  #:use-module (gnu packages suckless)
-  #:use-module (gnu packages mpd)
-  #:use-module (gnu packages gl)
-  #:use-module (gnu packages video)
-  #:use-module (gnu packages version-control)
+  #:use-module (gnu packages logging)
+  #:use-module (gnu packages lua)
+  #:use-module (gnu packages m4)
   #:use-module (gnu packages man)
-  #:use-module (gnu packages textutils)
+  #:use-module (gnu packages maths)
+  #:use-module (gnu packages mpd)
+  #:use-module (gnu packages pcre)
+  #:use-module (gnu packages perl)
+  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages pretty-print)
-  #:use-module (gnu packages logging)
+  #:use-module (gnu packages pulseaudio)
+  #:use-module (gnu packages python)
   #:use-module (gnu packages serialization)
-  #:use-module (guix download)
-  #:use-module (guix git-download))
+  #:use-module (gnu packages suckless)
+  #:use-module (gnu packages textutils)
+  #:use-module (gnu packages version-control)
+  #:use-module (gnu packages video)
+  #:use-module (gnu packages web)
+  #:use-module (gnu packages xdisorg)
+  #:use-module (gnu packages xml)
+  #:use-module (gnu packages xorg))
 
 (define-public bspwm
   (package
-- 
cgit 1.4.1


From 747aa6c46baeb02bb75e5c199dd005eb9dd52785 Mon Sep 17 00:00:00 2001
From: Tim Gesthuizen <tim.gesthuizen@yahoo.de>
Date: Tue, 15 Oct 2019 19:45:13 +0200
Subject: gnu: pwsafe: Update to 3.5.0

* gnu/packages/password-utils.scm (pwsafe): Update to 3.5.0.
[source]: Use git-file-name.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/password-utils.scm | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm
index ff13be24db..ba488dde27 100644
--- a/gnu/packages/password-utils.scm
+++ b/gnu/packages/password-utils.scm
@@ -21,7 +21,7 @@
 ;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
 ;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
-;;; Copyright © 2018 Tim Gesthuizen <tim.gesthuizen@yahoo.de>
+;;; Copyright © 2018, 2019 Tim Gesthuizen <tim.gesthuizen@yahoo.de>
 ;;; Copyright © 2019 Jens Mølgaard <jens@zete.tk>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -183,16 +183,17 @@ algorithms AES or Twofish.")
 (define-public pwsafe
   (package
     (name "pwsafe")
-    (version "3.48.0")
-    (home-page "https://www.pwsafe.org/" )
+    (version "3.50.0")
+    (home-page "https://www.pwsafe.org/")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/pwsafe/pwsafe.git")
              (commit version)))
-       (sha256 (base32 "0hxv23yh76liggxbjn4m132z15sklra8ms341xgzl4n5vjx30ihi"))
-       (file-name (string-append name "-" version "-checkout"))))
+       (sha256
+        (base32 "01kfssd2vr64yh4dqhch58x36n3aj3hpj5n560f41rsxym69c6qs"))
+       (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (native-inputs `(("gettext" ,gettext-minimal)
                      ("perl" ,perl)
-- 
cgit 1.4.1


From 50bfb70b73b5137fa156d25cc7b54f700cc91f08 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 22:30:49 +0300
Subject: gnu: pwsafe: Move googletest to native-inputs.

* gnu/packages/password-utils.scm (pwsafe)[inputs]: Move googletest ...
[native-inputs]: ... to here.
---
 gnu/packages/password-utils.scm | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm
index ba488dde27..efca02ff68 100644
--- a/gnu/packages/password-utils.scm
+++ b/gnu/packages/password-utils.scm
@@ -195,12 +195,13 @@ algorithms AES or Twofish.")
         (base32 "01kfssd2vr64yh4dqhch58x36n3aj3hpj5n560f41rsxym69c6qs"))
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
-    (native-inputs `(("gettext" ,gettext-minimal)
-                     ("perl" ,perl)
-                     ("zip" ,zip)))
+    (native-inputs
+     `(("gettext" ,gettext-minimal)
+       ("gtest" ,googletest)
+       ("perl" ,perl)
+       ("zip" ,zip)))
     (inputs `(("curl" ,curl)
               ("file" ,file)
-              ("gtest" ,googletest)
               ("libuuid" ,util-linux)
               ("libxt" ,libxt)
               ("libxtst" ,libxtst)
-- 
cgit 1.4.1


From ba8551ec79471ac402e6211d16e617bcb13e8d97 Mon Sep 17 00:00:00 2001
From: Arun Isaac <arunisaac@systemreboot.net>
Date: Wed, 16 Oct 2019 01:29:10 +0530
Subject: gnu: ansible: Work around issues with Guix wrapper scripts.

* gnu/packages/admin.scm (ansible)[arguments]: Remove fix-symlinks phase. Add
replace-symlinks phase.
---
 gnu/packages/admin.scm | 19 +++++++------------
 1 file changed, 7 insertions(+), 12 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 35dae2d056..0e4fb3947c 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -19,7 +19,7 @@
 ;;; Copyright © 2017 Ethan R. Jones <doubleplusgood23@gmail.com>
 ;;; Copyright © 2017 Christopher Allan Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2017, 2018 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2018, 2019 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
 ;;; Copyright © 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
@@ -1880,21 +1880,16 @@ import re
 sys.argv[0] = re.sub(r'\\.([^/]*)-real$', r'\\1', sys.argv[0])
 ")))
              #t))
-         (add-after 'wrap 'fix-symlinks
+         (add-after 'install 'replace-symlinks
            (lambda* (#:key outputs #:allow-other-keys)
+             ;; Replace symlinks with duplicate copies of the ansible
+             ;; executable.
              (let ((out (assoc-ref outputs "out")))
                (for-each
                 (lambda (subprogram)
-                  ;; The symlinks point to the ansible wrapper script. Make
-                  ;; them point to the real executable (.ansible-real).
-                  (delete-file (string-append out "/bin/.ansible-" subprogram "-real"))
-                  (symlink (string-append out "/bin/.ansible-real")
-                           (string-append out "/bin/.ansible-" subprogram "-real"))
-                  ;; The wrapper scripts of the symlinks invoke the ansible
-                  ;; wrapper script. Fix them to invoke the correct executable.
-                  (substitute* (string-append out "/bin/ansible-" subprogram)
-                    (("/bin/ansible")
-                     (string-append "/bin/.ansible-" subprogram "-real"))))
+                  (delete-file (string-append out "/bin/ansible-" subprogram))
+                  (copy-file (string-append out "/bin/ansible")
+                             (string-append out "/bin/ansible-" subprogram)))
                 (list "config" "console" "doc" "galaxy"
                       "inventory" "playbook" "pull" "vault")))
              #t)))))
-- 
cgit 1.4.1


From 131e967699245862f4b6c8df996cdba460823b06 Mon Sep 17 00:00:00 2001
From: Arun Isaac <arunisaac@systemreboot.net>
Date: Wed, 16 Oct 2019 01:30:18 +0530
Subject: gnu: ansible: Update to 2.8.5.

* gnu/packages/admin.scm (ansible): Update to 2.8.5.
---
 gnu/packages/admin.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 0e4fb3947c..083257767a 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -1839,13 +1839,13 @@ of supported upstream metrics systems simultaneously.")
 (define-public ansible
   (package
     (name "ansible")
-    (version "2.8.1")
+    (version "2.8.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ansible" version))
        (sha256
-        (base32 "0ia4x17ywym3r1m96ar4h0wc2xlylhbjp6x4wzwkh4p2i0x1vmg1"))))
+        (base32 "11k94ifp42psivzx147xwbmq1ak7qnjdgkb6c1xz53nfapkh754f"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-bcrypt" ,python-bcrypt)
-- 
cgit 1.4.1


From 0309e004e9dee5329e339bf7c53efdbce5f7ae73 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 23:29:54 +0300
Subject: gnu: xl2tpd: Fix install directory.

* gnu/packages/vpn.scm (xl2tpd)[arguments]: Unset DESTDIR, set PREFIX.
---
 gnu/packages/vpn.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index bc875b1c99..1694486908 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -530,7 +530,7 @@ WireGuard support.")
                 "1c2ahxz2zmmxwmk951d2qhijgz67zhwa1hn0r59fgz0y14w22myi"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:make-flags (list (string-append "DESTDIR=" %output)
+     `(#:make-flags (list (string-append "PREFIX=" %output)
                           "CC=gcc")
        #:phases (modify-phases %standard-phases
                   (delete 'configure))  ; no configure script
-- 
cgit 1.4.1


From 1f3700a43cab137ca3c90a60183ad377e2fad888 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 23:30:28 +0300
Subject: gnu: xl2tpd: Update to 1.3.15.

* gnu/packages/vpn.scm (xl2tpd): Update to 1.3.15.
---
 gnu/packages/vpn.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 1694486908..67980f76c3 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -518,7 +518,7 @@ WireGuard support.")
 (define-public xl2tpd
   (package
     (name "xl2tpd")
-    (version "1.3.14")
+    (version "1.3.15")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -527,7 +527,7 @@ WireGuard support.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1c2ahxz2zmmxwmk951d2qhijgz67zhwa1hn0r59fgz0y14w22myi"))))
+                "0ppwza8nwm1av1vldw40gin9wrjrs4l9si50jad414js3k8ycaag"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags (list (string-append "PREFIX=" %output)
-- 
cgit 1.4.1


From 4eb639ccf991858926c778769bff9f3b75c7a547 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 23:45:45 +0300
Subject: gnu: connman: Update build inputs.

* gnu/packages/connman.scm (connman)[arguments]: Don't enable pptp, it
isn't available.
[native-inputs]: Remove python-2, add python-wrapper.
[inputs]: Remove polkit, add xl2tpd.
---
 gnu/packages/connman.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/connman.scm b/gnu/packages/connman.scm
index df5aa7bb6d..013be97bbe 100644
--- a/gnu/packages/connman.scm
+++ b/gnu/packages/connman.scm
@@ -56,11 +56,10 @@
     (arguments
      `(#:configure-flags
        (list "--enable-nmcompat"
-             "--enable-polkit"
+             "--enable-polkit" ; Polkit doesn't need to be present at build time.
              "--enable-openconnect"
              "--enable-openvpn"
              "--enable-vpnc"
-             "--enable-pptp"
              "--enable-l2tp"
              "--localstatedir=/var"
              (string-append
@@ -69,13 +68,12 @@
               "--with-dbusdatadir=" (assoc-ref %outputs "out") "/share"))))
     (native-inputs
      `(("pkg-config" ,pkg-config)
-       ("python" ,python-2)))
+       ("python" ,python-wrapper)))
     (inputs
      `(("dbus" ,dbus)
        ("glib" ,glib)
        ("gnutls" ,gnutls)
        ("iptables" ,iptables)
-       ("polkit" ,polkit)        ;so connman can be used by unprivileged users
        ("readline" ,readline)
        ;; These inputs are needed for connman to include the interface to
        ;; these technologies so IF they are installed they can be used.
@@ -84,7 +82,8 @@
        ("openvpn" ,openvpn)
        ("ppp" ,ppp)
        ("vpnc" ,vpnc)
-       ("wpa-supplicant" ,wpa-supplicant)))
+       ("wpa-supplicant" ,wpa-supplicant)
+       ("xl2tpd" ,xl2tpd)))
     (home-page "https://01.org/connman")
     (synopsis "Connection management daemon")
     (description "Connman provides a daemon for managing Internet connections.
-- 
cgit 1.4.1


From 11af54466c2b001cf3aeb729197e1c3ebefab363 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Tue, 15 Oct 2019 23:47:33 +0300
Subject: gnu: econnman: Build with python.

* gnu/packages/connman.scm (econnman)[inputs]: Remove python-2,
python2-dbus, python2-efl. Add python-wrapper, python-dbus, python-efl.
---
 gnu/packages/connman.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/connman.scm b/gnu/packages/connman.scm
index 013be97bbe..1185561bc4 100644
--- a/gnu/packages/connman.scm
+++ b/gnu/packages/connman.scm
@@ -125,9 +125,9 @@ sharing) to clients via USB, ethernet, WiFi, cellular and Bluetooth.")
     (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs
      `(("efl" ,efl)
-       ("python-2" ,python-2)
-       ("python2-dbus" ,python2-dbus)
-       ("python2-efl" ,python2-efl)))
+       ("python" ,python-wrapper)
+       ("python-dbus" ,python-dbus)
+       ("python-efl" ,python-efl)))
     (home-page "https://www.enlightenment.org")
     (synopsis "Connman User Interface written using the EFL")
     (description
-- 
cgit 1.4.1


From 808dd2d0abb89f953c41b28a7ab209ff0b7984d3 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Tue, 15 Oct 2019 15:06:58 -0700
Subject: gnu: python-language-server: Update to 0.29.1.

* gnu/packages/python-xyz.scm (python-language-server): Update to 0.29.1.
[inputs]: Add python-flake8
---
 gnu/packages/python-xyz.scm | 63 +++++++++++++++++++++------------------------
 1 file changed, 29 insertions(+), 34 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4ea426d0d7..57d581990a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3121,44 +3121,39 @@ Language (TOML) configuration files.")
 Server (PLS).")
     (license license:expat)))
 
-;; XXX: We must use a non-release version since the latest release version
-;; requires python-jedi version < 0.15.
 (define-public python-language-server
-  (let ((commit "c3cab77a85b1de4af1aec1bafea6a7320d6baec5")
-        (revision "1"))
-    (package
-      (name "python-language-server")
-      (version (git-version "0.28.3" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/palantir/python-language-server.git")
-               (commit commit)))
-         (sha256
-          (base32
-           "1q0xdwgln09sh58j0ryygj92hfgdhwcs57zjvqihya23jr5v0bz4"))))
-      (build-system python-build-system)
-      (propagated-inputs
-       `(("python-pluggy" ,python-pluggy)
-         ("python-jsonrpc-server" ,python-jsonrpc-server)
-         ("python-jedi" ,python-jedi)
-         ("python-yapf" ,python-yapf)
-         ("python-pyflakes" ,python-pyflakes)
-         ("python-pydocstyle" ,python-pydocstyle)
-         ("python-pycodestyle" ,python-pycodestyle)
-         ("python-mccabe" ,python-mccabe)
-         ("python-rope" ,python-rope)
-         ("python-autopep8" ,python-autopep8)
-         ("python-pylint" ,python-pylint)))
-      (home-page "https://github.com/palantir/python-language-server")
-      (synopsis "Python implementation of the Language Server Protocol")
-      (description
-       "The Python Language Server (pyls) is an implementation of the Python 3
+  (package
+    (name "python-language-server")
+    (version "0.29.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "python-language-server" version))
+       (sha256
+        (base32
+         "1f8qlflh6j3s7qfmzhirpl8fgidl6f0qbakdmiml96wdxzvka0s3"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-pluggy" ,python-pluggy)
+       ("python-jsonrpc-server" ,python-jsonrpc-server)
+       ("python-jedi" ,python-jedi)
+       ("python-yapf" ,python-yapf)
+       ("python-pyflakes" ,python-pyflakes)
+       ("python-pydocstyle" ,python-pydocstyle)
+       ("python-pycodestyle" ,python-pycodestyle)
+       ("python-mccabe" ,python-mccabe)
+       ("python-rope" ,python-rope)
+       ("python-autopep8" ,python-autopep8)
+       ("python-flake8" ,python-flake8)
+       ("python-pylint" ,python-pylint)))
+    (home-page "https://github.com/palantir/python-language-server")
+    (synopsis "Python implementation of the Language Server Protocol")
+    (description
+     "The Python Language Server (pyls) is an implementation of the Python 3
 language specification for the Language Server Protocol (LSP).  This tool is
 used in text editing environments to provide a complete and integrated
 feature-set for programming Python effectively.")
-      (license license:expat))))
+    (license license:expat)))
 
 (define-public python-black
   (package
-- 
cgit 1.4.1


From 3268fba3d2a13971e1c3d6306985a4fe8c425351 Mon Sep 17 00:00:00 2001
From: Eric Bavier <bavier@member.fsf.org>
Date: Tue, 15 Oct 2019 22:31:11 -0500
Subject: gnu: onionshare: Update to 2.2.

* gnu/packages/tor.scm (onionshare): Update to 2.2.
[inputs]: Add python-flask-httpauth.
[arguments]: Adjust 'fix-install-path' to new file name.
[description]: Improve wording and clarity.
[license]: Add expat license for bundled jquery.
---
 gnu/packages/tor.scm | 25 +++++++++++++------------
 1 file changed, 13 insertions(+), 12 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index 27090c14cf..a82654be0a 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -158,7 +158,7 @@ networks.")
 (define-public onionshare
   (package
     (name "onionshare")
-    (version "2.1")
+    (version "2.2")
     (source
       (origin
         (method git-fetch)
@@ -167,7 +167,7 @@ networks.")
               (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "1lx21p12888qnbhsyin4lrnn4xizb39ldk77r71y53hn8mfxi54z"))))
+         (base32 "0m8ygxcyp3nfzzhxs2dfnpqwh1vx0aws44lszpnnczz4fks3a5j4"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -181,7 +181,7 @@ networks.")
                (substitute* "setup.py"
                  ;; For the nautilus plugin.
                  (("/usr/share/nautilus") "share/nautilus"))
-               (substitute* "install/onionshare.desktop"
+               (substitute* "install/org.onionshare.OnionShare.desktop"
                  (("/usr") out))
                #t)))
          (delete 'check)
@@ -196,6 +196,7 @@ networks.")
     (inputs
      `(("python-pycrypto" ,python-pycrypto)
        ("python-flask" ,python-flask)
+       ("python-flask-httpauth" ,python-flask-httpauth)
        ("python-nautilus" ,python-nautilus)
        ("python-sip" ,python-sip)
        ("python-stem" ,python-stem)
@@ -203,15 +204,15 @@ networks.")
        ("python-pyqt" ,python-pyqt)))
     (home-page "https://onionshare.org/")
     (synopsis "Securely and anonymously share files")
-    (description "OnionShare lets you securely and anonymously share files of
-any size.  It works by starting a web server, making it accessible as a Tor
-hidden service, and generating an unguessable URL to access and download the
-files.  It doesn't require setting up a server on the internet somewhere or
-using a third party filesharing service.  You host the file on your own computer
-and use a Tor hidden service to make it temporarily accessible over the
-internet.  The other user just needs to use Tor Browser to download the file
-from you.")
-    (license license:gpl3+)))
+    (description "OnionShare is a tool for securely and anonymously sending
+and receiving files using Tor onion services.  It works by starting a web
+server directly on your computer and making it accessible as an unguessable
+Tor web address that others can load in a Tor-enabled web browser to download
+files from you, or upload files to you.  It doesn't require setting up a
+separate server, using a third party file-sharing service, or even logging
+into an account.")
+    ;; Bundled, minified jquery is expat licensed.
+    (license (list license:gpl3+ license:expat))))
 
 (define-public nyx
   (package
-- 
cgit 1.4.1


From 5051ef95b82a33bee8d71f742edc9b28c56793ef Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 03:27:17 +0200
Subject: gnu: python-tornado-http-auth: Update to 1.1.1.

* gnu/packages/python-web.scm (python-tornado-http-auth): Update to 1.1.1.
---
 gnu/packages/python-web.scm | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index ffef3319f7..6e924dd7e4 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -817,21 +817,18 @@ connection to each user.")
 (define-public python-tornado-http-auth
   (package
     (name "python-tornado-http-auth")
-    (version "1.1.0")
+    (version "1.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "tornado-http-auth" version))
        (sha256
-        (base32
-         "0znrgqd7k2s4ia474xizi6h3061zj4sn5n6cq76bkwl3wwshifn5"))))
+        (base32 "0hyc5f0a09i5yb99pk4bxpg6w9ichbrb5cv7hc9hff7rxd8w0v0x"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-tornado" ,python-tornado)))
-    (home-page
-     "https://github.com/gvalkov/tornado-http-auth")
-    (synopsis
-     "Digest and basic authentication module for Tornado")
+    (home-page "https://github.com/gvalkov/tornado-http-auth")
+    (synopsis "Digest and basic authentication module for Tornado")
     (description
      "Provides support for adding authentication to services using the Tornado
 web framework, either via the basic or digest authentication schemes.")
-- 
cgit 1.4.1


From 79bc917685eefa3c34dc50479b2ab55860af7543 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 02:24:07 +0200
Subject: gnu: python-pylibmc: Update to 1.6.1.

* gnu/packages/databases.scm (python-pylibmc): Update to 1.6.1.
---
 gnu/packages/databases.scm | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 690f5a38ad..f8e72565a0 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -377,14 +377,13 @@ the API, and provides features such as:
 (define-public python-pylibmc
   (package
     (name "python-pylibmc")
-    (version "1.6.0")
+    (version "1.6.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pylibmc" version))
        (sha256
-        (base32
-         "1n6nvvhl0g52gpzzwdj1my6049xljkfwyxxygnwda9smrbj7pyay"))))
+        (base32 "1sg7d9j0v6g3xg3finf4l1hb72c13vcyyi6rqrc9shbx903d93ca"))))
     (build-system python-build-system)
     (arguments
      '(#:phases
@@ -400,10 +399,8 @@ the API, and provides features such as:
      `(("libmemcached" ,libmemcached)
        ("zlib" ,zlib)
        ("cyrus-sasl" ,cyrus-sasl)))
-    (home-page
-     "http://sendapatch.se/projects/pylibmc/")
-    (synopsis
-     "Python client for memcached")
+    (home-page "http://sendapatch.se/projects/pylibmc/")
+    (synopsis "Python client for memcached")
     (description
      "@code{pylibmc} is a client in Python for memcached.  It is a wrapper
 around TangentOrg’s libmemcached library, and can be used as a drop-in
-- 
cgit 1.4.1


From ee70f49b77011a89a64a4b4e380f90fb67b0002b Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 18:47:37 +0200
Subject: gnu: kakoune: Update to 2019.07.01.

* gnu/packages/text-editors.scm (kakoune): Update to 2019.07.01.
---
 gnu/packages/text-editors.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm
index e5dee2f4e5..e83bcad509 100644
--- a/gnu/packages/text-editors.scm
+++ b/gnu/packages/text-editors.scm
@@ -114,7 +114,7 @@ based command language.")
 (define-public kakoune
   (package
     (name "kakoune")
-    (version "2019.01.20")
+    (version "2019.07.01")
     (source
      (origin
        (method url-fetch)
@@ -122,7 +122,7 @@ based command language.")
                            "releases/download/v" version "/"
                            "kakoune-" version ".tar.bz2"))
        (sha256
-        (base32 "15drk7i17qdiqxqkjxhrxfclryj9qzb5ymxd20dwl05y4yi064cr"))))
+        (base32 "1lvgxnih4xfrkcmcc476qi9nz6dxcdbfxsinhykp3g80j14piycc"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags
-- 
cgit 1.4.1


From 8524b1b8b4ba973864b67354d5d81ad1a691e764 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 03:06:10 +0200
Subject: gnu: perl-gtk2: Update to 1.24993.

* gnu/packages/gtk.scm (perl-gtk2): Update to 1.24993.
---
 gnu/packages/gtk.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 8f991a347b..74f61967f6 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -1319,14 +1319,14 @@ produces identical output on all those targets.")
 (define-public perl-gtk2
   (package
     (name "perl-gtk2")
-    (version "1.24992")
+    (version "1.24993")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://cpan/authors/id/X/XA/XAOC/Gtk2-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1044rj3wbfmgaif2jb0k28m2aczli6ai2n5yvn6pr7zjyw16kvd2"))))
+                "0ry9jfvfgdwzalxcvwsgr7plhk3agx7p40l0fqdf3vrf7ds47i29"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-extutils-depends" ,perl-extutils-depends)
-- 
cgit 1.4.1


From dedb10b24b5bfe656932213b7555481544e71730 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 03:08:19 +0200
Subject: gnu: perl-test-runvalgrind: Update to 0.2.1.

* gnu/packages/perl-check.scm (perl-test-runvalgrind): Update to 0.2.1.
---
 gnu/packages/perl-check.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl-check.scm b/gnu/packages/perl-check.scm
index 5eac984423..2d2a24b6b0 100644
--- a/gnu/packages/perl-check.scm
+++ b/gnu/packages/perl-check.scm
@@ -1170,7 +1170,7 @@ reported, and the tests skipped.")
 (define-public perl-test-runvalgrind
   (package
     (name "perl-test-runvalgrind")
-    (version "0.2.0")
+    (version "0.2.1")
     (source
      (origin
        (method url-fetch)
@@ -1179,8 +1179,7 @@ reported, and the tests skipped.")
              version
              ".tar.gz"))
        (sha256
-        (base32
-         "0cfndkn2k9pcx290wcblwmrwh1ybs0grxjlsrp8fbqqbmmjpb53h"))))
+        (base32 "175hlycrhgwrp7j4rwx5bk4fd6775242wjdqv107rvgsrszsi915"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-module-build" ,perl-module-build)))
-- 
cgit 1.4.1


From 0910bf508fbc2037c37b45270b5ee622255b4eb3 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 04:22:40 +0200
Subject: gnu: perl-yaml-libyaml: Update to 0.80.

* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.80.
---
 gnu/packages/perl.scm | 13 +++++--------
 1 file changed, 5 insertions(+), 8 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 5290e22d9b..006a23b2af 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -9416,21 +9416,18 @@ on the YAML 1.0 specification.")
 (define-public perl-yaml-libyaml
   (package
     (name "perl-yaml-libyaml")
-    (version "0.78")
+    (version "0.80")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
              "mirror://cpan/authors/id/T/TI/TINITA/YAML-LibYAML-"
-             version
-             ".tar.gz"))
+             version ".tar.gz"))
        (sha256
-        (base32 "03plv3wfqqqf7g8mxr8f6wlki2af8w3rg9xcfii1z5l1f1iarxx1"))))
+        (base32 "1nhn4w52kpq757rxl052f61h36rdzsy416k740m3fy5ih7axhq4x"))))
     (build-system perl-build-system)
-    (home-page
-     "https://metacpan.org/release/YAML-LibYAML")
-    (synopsis
-     "Perl YAML Serialization using XS and libyaml")
+    (home-page "https://metacpan.org/release/YAML-LibYAML")
+    (synopsis "Perl YAML Serialization using XS and libyaml")
     (description
      "@code{YAML::XS} is a Perl XS binding to libyaml which offers Perl the
 best YAML support to date.")
-- 
cgit 1.4.1


From c1abd9d7e78aa10264c9dd643106bb7511dac9aa Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 04:47:19 +0200
Subject: gnu: perl-yaml: Update to 1.29.

* gnu/packages/perl.scm (perl-yaml): Update to 1.29.
---
 gnu/packages/perl.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 006a23b2af..3f20c8d058 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -9395,15 +9395,14 @@ neither visible nor modifiable from Perl space).")
 (define-public perl-yaml
   (package
     (name "perl-yaml")
-    (version "1.27")
+    (version "1.29")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://cpan/authors/id/T/TI/TINITA/"
                            "YAML-" version ".tar.gz"))
        (sha256
-        (base32
-         "1yc2yqjyrcdlhp209f3a63f9xx6v5klisli25fv221yy43la34n9"))))
+        (base32 "0gl5ssvrdajlbc85cy6z873n9cwlssk5q8z97a31vyiikhw5fp4w"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-yaml" ,perl-test-yaml)))
-- 
cgit 1.4.1


From 803b9736689e2e3a772848f8a41c24488fb692b4 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Tue, 15 Oct 2019 18:46:30 +0200
Subject: gnu: perl-net-dns: Update to 1.21.

* gnu/packages/networking.scm (perl-net-dns): Update to 1.21.
---
 gnu/packages/networking.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index c0597c7e45..17c7c65a25 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -1077,7 +1077,7 @@ private (reserved).")
 (define-public perl-net-dns
  (package
   (name "perl-net-dns")
-  (version "1.20")
+  (version "1.21")
   (source
     (origin
       (method url-fetch)
@@ -1088,7 +1088,7 @@ private (reserved).")
         (string-append "mirror://cpan/authors/id/N/NL/NLNETLABS/Net-DNS-"
                        version ".tar.gz")))
       (sha256
-       (base32 "06z09igd42s0kg2ps5k7vpypg77zswfryqzbyalbllvjd0mnknbz"))))
+       (base32 "0yknrsh0wqr9s43c0wf3dyzrsi2r7k0v75hay74gqkq850xy3vyx"))))
   (build-system perl-build-system)
   (inputs
     `(("perl-digest-hmac" ,perl-digest-hmac)))
-- 
cgit 1.4.1


From ae3f3090333bb42c967055a909f107d102920eb3 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 05:12:51 +0200
Subject: gnu: perl-datetime-format-flexible: Update to 0.32.

* gnu/packages/perl.scm (perl-datetime-format-flexible): Update to 0.32.
[native-inputs]: Add perl-test-exception and perl-test-nowarnings.
---
 gnu/packages/perl.scm | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 3f20c8d058..83b8960845 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -2390,16 +2390,18 @@ to do this without writing reams of structural code.")
 (define-public perl-datetime-format-flexible
   (package
     (name "perl-datetime-format-flexible")
-    (version "0.28")
+    (version "0.32")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://cpan/authors/id/T/TH/THINC/"
                            "DateTime-Format-Flexible-" version ".tar.gz"))
        (sha256
-        (base32
-         "1g63zs0q2x40h29r7in50c55g6kxiw3m2faw2p6c4rg74sj2k2b5"))))
+        (base32 "1vnq3a8bwhidcv3z9cvcmfiq2qa84hikr993ffr19fw7nbzbk9sh"))))
     (build-system perl-build-system)
+    (native-inputs
+     `(("perl-test-exception" ,perl-test-exception)
+       ("perl-test-nowarnings" ,perl-test-nowarnings)))
     (propagated-inputs
      `(("perl-datetime" ,perl-datetime)
        ("perl-datetime-format-builder" ,perl-datetime-format-builder)
-- 
cgit 1.4.1


From f2eacb3b33cceec99e8216a6061a5134668cc26c Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 05:21:27 +0200
Subject: gnu: perl-datetime-format-flexible: Fix typo in synopsis.

* gnu/packages/perl.scm (perl-datetime-format-flexible)[synopsis]: Fix typo.
---
 gnu/packages/perl.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 83b8960845..08a25fc503 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -2410,7 +2410,7 @@ to do this without writing reams of structural code.")
        ("perl-module-pluggable" ,perl-module-pluggable)
        ("perl-test-mocktime" ,perl-test-mocktime)))
     (home-page "https://metacpan.org/release/DateTime-Format-Flexible")
-    (synopsis "Parse data/time strings")
+    (synopsis "Parse date and time strings")
     (description "DateTime::Format::Flexible attempts to take any string you
 give it and parse it into a DateTime object.")
     (license (package-license perl))))
-- 
cgit 1.4.1


From 6f2697f748a83146d0611ed315cdbb364c3935a9 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 05:20:29 +0200
Subject: gnu: perl-datetime-format-flexible: Make test input native.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/perl.scm (perl-datetime-format-flexible)
[native-inputs]: Move perl-test-mocktime here…
[propagated-inputs]: …from here.
---
 gnu/packages/perl.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 08a25fc503..f172617a13 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -2401,14 +2401,14 @@ to do this without writing reams of structural code.")
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-exception" ,perl-test-exception)
-       ("perl-test-nowarnings" ,perl-test-nowarnings)))
+       ("perl-test-nowarnings" ,perl-test-nowarnings)
+       ("perl-test-mocktime" ,perl-test-mocktime)))
     (propagated-inputs
      `(("perl-datetime" ,perl-datetime)
        ("perl-datetime-format-builder" ,perl-datetime-format-builder)
        ("perl-datetime-timezone" ,perl-datetime-timezone)
        ("perl-list-moreutils" ,perl-list-moreutils)
-       ("perl-module-pluggable" ,perl-module-pluggable)
-       ("perl-test-mocktime" ,perl-test-mocktime)))
+       ("perl-module-pluggable" ,perl-module-pluggable)))
     (home-page "https://metacpan.org/release/DateTime-Format-Flexible")
     (synopsis "Parse date and time strings")
     (description "DateTime::Format::Flexible attempts to take any string you
-- 
cgit 1.4.1


From 9ffbc2456babcc8e61e5291bef1f04037145bd95 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 04:49:30 +0200
Subject: gnu: perl-file-find-object-rule: Update to 0.0311.

* gnu/packages/perl.scm (perl-file-find-object-rule): Update to 0.0311.
---
 gnu/packages/perl.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index f172617a13..ead68d18d7 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -9705,7 +9705,7 @@ File::Find replacement in Perl.")
 (define-public perl-file-find-object-rule
  (package
   (name "perl-file-find-object-rule")
-  (version "0.0309")
+  (version "0.0311")
   (source
     (origin
       (method url-fetch)
@@ -9714,7 +9714,7 @@ File::Find replacement in Perl.")
              version
              ".tar.gz"))
       (sha256
-        (base32 "1qr1rrp9gn0bpsixsrkan710sxc7bnhirh0anjsw2ihn4wdy3151"))))
+        (base32 "0gjzfd5fz7mhr5abafxr7qic7nwhk7y9iv17as6l880973j952h3"))))
   (build-system perl-build-system)
   (native-inputs
     `(("perl-module-build" ,perl-module-build)))
-- 
cgit 1.4.1


From 655ffa6ab33604e4c3faf101884ee206f7225436 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 05:05:16 +0200
Subject: gnu: perl-class-c3-adopt-next: Update to 0.14.

* gnu/packages/perl.scm (perl-class-c3-adopt-next): Update to 0.14.
[native-inputs]: Add perl-module-build and perl-module-build-tiny.
---
 gnu/packages/perl.scm | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index ead68d18d7..d03e67037b 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -935,18 +935,19 @@ sophisticated C3 method resolution order.")
 (define-public perl-class-c3-adopt-next
   (package
     (name "perl-class-c3-adopt-next")
-    (version "0.13")
+    (version "0.14")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/F/FL/FLORA/"
+       (uri (string-append "mirror://cpan/authors/id/E/ET/ETHER/"
                            "Class-C3-Adopt-NEXT-" version ".tar.gz"))
        (sha256
-        (base32
-         "1rwgbx6dsy4rpas94p8wakzj7hrla1p15jnbm24kwhsv79gp91ld"))))
+        (base32 "1xsbydmiskpa1qbmnf6n39cb83nlb432xgkad9kfhxnvm8jn4rw5"))))
     (build-system perl-build-system)
     (native-inputs
-     `(("perl-test-exception" ,perl-test-exception)))
+     `(("perl-module-build" ,perl-module-build)
+       ("perl-module-build-tiny" ,perl-module-build-tiny)
+       ("perl-test-exception" ,perl-test-exception)))
     (propagated-inputs
      `(("perl-list-moreutils" ,perl-list-moreutils)
        ("perl-mro-compat" ,perl-mro-compat)))
-- 
cgit 1.4.1


From 1ee0ac3f0dc6d904eba842bad94410b2181626f8 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 04:00:57 +0200
Subject: gnu: man-pages: Update to 5.03.

* gnu/packages/man.scm (man-pages): Update to 5.03.
---
 gnu/packages/man.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm
index 42e1918597..de2377a14e 100644
--- a/gnu/packages/man.scm
+++ b/gnu/packages/man.scm
@@ -162,7 +162,7 @@ the traditional flat-text whatis databases.")
 (define-public man-pages
   (package
     (name "man-pages")
-    (version "5.02")
+    (version "5.03")
     (source
      (origin
        (method url-fetch)
@@ -172,7 +172,7 @@ the traditional flat-text whatis databases.")
               (string-append "mirror://kernel.org/linux/docs/man-pages/Archive/"
                              "man-pages-" version ".tar.xz")))
        (sha256
-        (base32 "1s4pdz2pwf0kvhdwx2s6lqn3xxzi38yz5jfyq5ymdmswc9gaiyn2"))))
+        (base32 "082i9258rl9xxjgpxpz3v8jcwk96dsk704ki9h9lq7q8z7m3mqbz"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases (delete 'configure))
-- 
cgit 1.4.1


From 4fcb6a3558b4212462c7c2afd2f5a834342f41be Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 16 Oct 2019 09:19:50 +0300
Subject: gnu: aspell: Update to 0.60.8.

* gnu/packages/aspell.scm (aspell): Update to 0.60.8.
[source]: Remove patch.
* gnu/packages/patches/aspell-gcc-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
---
 gnu/local.mk                                 |  1 -
 gnu/packages/aspell.scm                      |  9 ++++----
 gnu/packages/patches/aspell-gcc-compat.patch | 31 ----------------------------
 3 files changed, 4 insertions(+), 37 deletions(-)
 delete mode 100644 gnu/packages/patches/aspell-gcc-compat.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 3fbfe0f2bb..559655abc5 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -695,7 +695,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch	\
   %D%/packages/patches/apr-skip-getservbyname-test.patch	\
   %D%/packages/patches/aspell-default-dict-dir.patch		\
-  %D%/packages/patches/aspell-gcc-compat.patch			\
   %D%/packages/patches/ath9k-htc-firmware-binutils.patch	\
   %D%/packages/patches/ath9k-htc-firmware-gcc.patch		\
   %D%/packages/patches/ath9k-htc-firmware-objcopy.patch		\
diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm
index 4f6f1a1cca..8e0edf2774 100644
--- a/gnu/packages/aspell.scm
+++ b/gnu/packages/aspell.scm
@@ -38,7 +38,7 @@
 (define-public aspell
   (package
     (name "aspell")
-    (version "0.60.6.1")
+    (version "0.60.8")
     (source
      (origin
       (method url-fetch)
@@ -46,9 +46,8 @@
                           version ".tar.gz"))
       (sha256
        (base32
-        "1qgn5psfyhbrnap275xjfrzppf5a83fb67gpql0kfqv37al869gm"))
-      (patches (search-patches "aspell-default-dict-dir.patch"
-                               "aspell-gcc-compat.patch"))))
+        "1wi60ankalmh8ds7nplz434jd7j94gdvbahdwsr539rlad8pxdzr"))
+      (patches (search-patches "aspell-default-dict-dir.patch"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -144,7 +143,7 @@ dictionaries, including personal ones.")
 (define-public aspell-dict-ar
   (aspell-dictionary "ar" "Arabic"
                      #:version "1.2-0"
-		     #:prefix "aspell6-"
+                     #:prefix "aspell6-"
                      #:sha256
                      (base32
                       "1avw40bp8yi5bnkq64ihm2rldgw34lk89yz281q9bmndh95a47h4")))
diff --git a/gnu/packages/patches/aspell-gcc-compat.patch b/gnu/packages/patches/aspell-gcc-compat.patch
deleted file mode 100644
index 94c44f8fb6..0000000000
--- a/gnu/packages/patches/aspell-gcc-compat.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-Fix GCC7 warnings.
-
-Taken from upstream:
-https://git.savannah.gnu.org/cgit/aspell.git/commit/?id=8089fa02122fed0a6394eba14bbedcb1d18e2384
-
-diff --git a/modules/filter/tex.cpp b/modules/filter/tex.cpp
-index a979539..19ab63c 100644
---- a/modules/filter/tex.cpp
-+++ b/modules/filter/tex.cpp
-@@ -174,7 +174,7 @@ namespace {
- 
-     if (c == '{') {
- 
--      if (top.in_what == Parm || top.in_what == Opt || top.do_check == '\0')
-+      if (top.in_what == Parm || top.in_what == Opt || *top.do_check == '\0')
- 	push_command(Parm);
- 
-       top.in_what = Parm;
-diff --git a/prog/check_funs.cpp b/prog/check_funs.cpp
-index db54f3d..89ee09d 100644
---- a/prog/check_funs.cpp
-+++ b/prog/check_funs.cpp
-@@ -647,7 +647,7 @@ static void print_truncate(FILE * out, const char * word, int width) {
-     }
-   }
-   if (i == width-1) {
--    if (word == '\0')
-+    if (*word == '\0')
-       put(out,' ');
-     else if (word[len] == '\0')
-       put(out, word, len);
-- 
cgit 1.4.1


From 4dfc73692bf94d58c962ff0971e8e83e99da2b62 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 16 Oct 2019 09:22:23 +0300
Subject: gnu: aspell-dict-de: Update to 20161207-7-0.

* gnu/packages/aspell.scm (aspell-dict-de): Update to 20161207-7-0.
---
 gnu/packages/aspell.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm
index 8e0edf2774..5119a5a2cd 100644
--- a/gnu/packages/aspell.scm
+++ b/gnu/packages/aspell.scm
@@ -165,10 +165,10 @@ dictionaries, including personal ones.")
 
 (define-public aspell-dict-de
   (aspell-dictionary "de" "German"
-                     #:version "20030222-1"
+                     #:version "20161207-7-0"
                      #:sha256
                      (base32
-                      "01p92qj66cqb346gk7hjfynaap5sbcn85xz07kjfdq623ghr8v5s")))
+                      "0wamclvp66xfmv5wff96v6gdlnfv4y8lx3f8wvxyzm5imwgms4n2")))
 
 (define-public aspell-dict-da
   (aspell-dictionary "da" "Danish"
-- 
cgit 1.4.1


From 9d0abf0f2ee39dfa03f16a117476c67f48a7eebc Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 16 Oct 2019 09:23:37 +0300
Subject: gnu: aspell-dict-en: Upgrade to 2019.10.06-0.

* gnu/packages/aspell.scm (aspell-dict-en): Upgrade to 2019.10.06-0.
---
 gnu/packages/aspell.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm
index 5119a5a2cd..9ce2187fb5 100644
--- a/gnu/packages/aspell.scm
+++ b/gnu/packages/aspell.scm
@@ -188,10 +188,10 @@ dictionaries, including personal ones.")
 
 (define-public aspell-dict-en
   (aspell-dictionary "en" "English"
-                     #:version "2018.04.16-0"
+                     #:version "2019.10.06-0"
                      #:sha256
                      (base32
-                      "0bxxdzkk9g27plg22y9qzsx9cfjw3aa29w5bmzs561qc9gkp247i")))
+                      "1zai9wrqwgb9z9vfgb22qhrvxvg73jg0ix44j1khm2f6m96lncr4")))
 
 (define-public aspell-dict-eo
   (aspell-dictionary "eo" "Esperanto"
-- 
cgit 1.4.1


From 947141fdefeda9cbddf826633a521d0f2b9039a2 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 16 Oct 2019 09:25:58 +0300
Subject: gnu: aspell-dict-pt-br: Upgrade to 20131030-12-0.

* gnu/packages/aspell.scm (aspell-dict-pt-br): Upgrade to 20131030-12-0.
---
 gnu/packages/aspell.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm
index 9ce2187fb5..9181bae9f8 100644
--- a/gnu/packages/aspell.scm
+++ b/gnu/packages/aspell.scm
@@ -290,11 +290,10 @@ dictionaries, including personal ones.")
 
 (define-public aspell-dict-pt-br
   (aspell-dictionary "pt_BR" "Brazilian Portuguese"
-                     #:version "20090702-0"
-                     #:prefix "aspell6-"
+                     #:version "20131030-12-0"
                      #:sha256
                      (base32
-                      "1y09lx9zf2rnp55r16b2vgj953l3538z1vaqgflg9mdvm555bz3p")))
+                      "1xqlpk21s93c6blkdnpk7l62q9fxjvzdv2x86chl8p2x1gdrj3gb")))
 
 (define-public aspell-dict-pt-pt
   (aspell-dictionary "pt_PT" "Portuguese"
-- 
cgit 1.4.1


From 9eb6d7125bc122aed1faff21ac7aa4a04e55ff74 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 16 Oct 2019 09:26:59 +0300
Subject: gnu: aspell-dict-pt-pt: Upgrade to 20190329-1-0.

* gnu/packages/aspell.scm (aspell-dict-pt-pt): Upgrade to 20190329-1-0.
---
 gnu/packages/aspell.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm
index 9181bae9f8..d3015617ec 100644
--- a/gnu/packages/aspell.scm
+++ b/gnu/packages/aspell.scm
@@ -297,11 +297,10 @@ dictionaries, including personal ones.")
 
 (define-public aspell-dict-pt-pt
   (aspell-dictionary "pt_PT" "Portuguese"
-                     #:version "20070510-0"
-                     #:prefix "aspell6-"
+                     #:version "20190329-1-0"
                      #:sha256
                      (base32
-                      "1mnr994cwlag6shy8865ky99lymysiln07mbldcncahg90dagdxq")))
+                      "0ld0d0ily4jqifjfsxfv4shbicz6ymm2gk56fq9gbzra1j4qnw75")))
 
 (define-public aspell-dict-ru
   (aspell-dictionary "ru" "Russian"
-- 
cgit 1.4.1


From 4a822462ef66c4c61d2f3351cc2d91dd76e1a701 Mon Sep 17 00:00:00 2001
From: Efraim Flashner <efraim@flashner.co.il>
Date: Wed, 16 Oct 2019 09:31:54 +0300
Subject: Revert "gnu: aspell: Update to 0.60.8."

This reverts commit 4fcb6a3558b4212462c7c2afd2f5a834342f41be.

aspell causes about 1400 packages to be rebuilt.
---
 gnu/local.mk                                 |  1 +
 gnu/packages/aspell.scm                      |  9 ++++----
 gnu/packages/patches/aspell-gcc-compat.patch | 31 ++++++++++++++++++++++++++++
 3 files changed, 37 insertions(+), 4 deletions(-)
 create mode 100644 gnu/packages/patches/aspell-gcc-compat.patch

(limited to 'gnu')

diff --git a/gnu/local.mk b/gnu/local.mk
index 559655abc5..3fbfe0f2bb 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -695,6 +695,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch	\
   %D%/packages/patches/apr-skip-getservbyname-test.patch	\
   %D%/packages/patches/aspell-default-dict-dir.patch		\
+  %D%/packages/patches/aspell-gcc-compat.patch			\
   %D%/packages/patches/ath9k-htc-firmware-binutils.patch	\
   %D%/packages/patches/ath9k-htc-firmware-gcc.patch		\
   %D%/packages/patches/ath9k-htc-firmware-objcopy.patch		\
diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm
index d3015617ec..9482e641cf 100644
--- a/gnu/packages/aspell.scm
+++ b/gnu/packages/aspell.scm
@@ -38,7 +38,7 @@
 (define-public aspell
   (package
     (name "aspell")
-    (version "0.60.8")
+    (version "0.60.6.1")
     (source
      (origin
       (method url-fetch)
@@ -46,8 +46,9 @@
                           version ".tar.gz"))
       (sha256
        (base32
-        "1wi60ankalmh8ds7nplz434jd7j94gdvbahdwsr539rlad8pxdzr"))
-      (patches (search-patches "aspell-default-dict-dir.patch"))))
+        "1qgn5psfyhbrnap275xjfrzppf5a83fb67gpql0kfqv37al869gm"))
+      (patches (search-patches "aspell-default-dict-dir.patch"
+                               "aspell-gcc-compat.patch"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -143,7 +144,7 @@ dictionaries, including personal ones.")
 (define-public aspell-dict-ar
   (aspell-dictionary "ar" "Arabic"
                      #:version "1.2-0"
-                     #:prefix "aspell6-"
+		     #:prefix "aspell6-"
                      #:sha256
                      (base32
                       "1avw40bp8yi5bnkq64ihm2rldgw34lk89yz281q9bmndh95a47h4")))
diff --git a/gnu/packages/patches/aspell-gcc-compat.patch b/gnu/packages/patches/aspell-gcc-compat.patch
new file mode 100644
index 0000000000..94c44f8fb6
--- /dev/null
+++ b/gnu/packages/patches/aspell-gcc-compat.patch
@@ -0,0 +1,31 @@
+Fix GCC7 warnings.
+
+Taken from upstream:
+https://git.savannah.gnu.org/cgit/aspell.git/commit/?id=8089fa02122fed0a6394eba14bbedcb1d18e2384
+
+diff --git a/modules/filter/tex.cpp b/modules/filter/tex.cpp
+index a979539..19ab63c 100644
+--- a/modules/filter/tex.cpp
++++ b/modules/filter/tex.cpp
+@@ -174,7 +174,7 @@ namespace {
+ 
+     if (c == '{') {
+ 
+-      if (top.in_what == Parm || top.in_what == Opt || top.do_check == '\0')
++      if (top.in_what == Parm || top.in_what == Opt || *top.do_check == '\0')
+ 	push_command(Parm);
+ 
+       top.in_what = Parm;
+diff --git a/prog/check_funs.cpp b/prog/check_funs.cpp
+index db54f3d..89ee09d 100644
+--- a/prog/check_funs.cpp
++++ b/prog/check_funs.cpp
+@@ -647,7 +647,7 @@ static void print_truncate(FILE * out, const char * word, int width) {
+     }
+   }
+   if (i == width-1) {
+-    if (word == '\0')
++    if (*word == '\0')
+       put(out,' ');
+     else if (word[len] == '\0')
+       put(out, word, len);
-- 
cgit 1.4.1


From b2dcfaf2d194ead8d39afc20834a3ff2d9b4e541 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Wed, 16 Oct 2019 13:34:50 +0200
Subject: gnu: rkrlv2: Update to 0-2.7edcb4e.

* gnu/packages/music.scm (rkrlv2): Update to 0-2.7edcb4e.
---
 gnu/packages/music.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 22db0cf604..040dfad506 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -3403,8 +3403,9 @@ slow gear audio effect to produce volume swells."))))
 a simulation of an analog Wah pedal with switchless activation."))))
 
 (define-public rkrlv2
-  (let ((commit "d8c17d3c976107e5c012970276d7cf0aa059f15b")
-        (revision "1"))
+  ;; This commit corresponds to the beta_3 tag
+  (let ((commit "7edcb4e29a358623bfd57fa2c27e5da60adfcec3")
+        (revision "2"))
     (package
       (name "rkrlv2")
       (version (git-version "0" revision commit))
@@ -3415,7 +3416,7 @@ a simulation of an analog Wah pedal with switchless activation."))))
                       (commit commit)))
                 (sha256
                  (base32
-                  "035z068rlafb7ibgqf34ck2lm4fab8yzlx41qh061x2xi4hxkvp0"))
+                  "16i4ajrib7kb0abdcn4901g8a4lkwkp2fyqyms38dhqq84slyfjs"))
                 (file-name (git-file-name name version))))
       (build-system cmake-build-system)
       (arguments '(#:tests? #f)) ; there are no tests
-- 
cgit 1.4.1


From 11a9b945ccae3a14e1f54805da91e55489efc005 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 17:24:30 +0200
Subject: gnu: sudo: Update to 1.8.28p1.

* gnu/packages/admin.scm (sudo): Update to 1.8.28p1.
---
 gnu/packages/admin.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 083257767a..21d105bfe5 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -1128,7 +1128,7 @@ system administrator.")
 (define-public sudo
   (package
     (name "sudo")
-    (version "1.8.28")
+    (version "1.8.28p1")
     (source (origin
               (method url-fetch)
               (uri
@@ -1138,7 +1138,7 @@ system administrator.")
                                     version ".tar.gz")))
               (sha256
                (base32
-                "188k3w67aflbmi4b5z23pxrvzfcfndi22b84w86gzjh8b9sglaci"))
+                "09xhx2k7j6wlqs9bl7snamd4k6lkyv9ycjwdspgbbqrimy25mfi3"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
cgit 1.4.1


From 8361b9011ae7bf85da72189fcbf6dcef73d5dd1b Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 05:42:29 +0200
Subject: gnu: perl-class-method-modifiers: Update to 2.13.

* gnu/packages/perl.scm (perl-class-method-modifiers): Update to 2.13.
[native-inputs]: Replace perl-test-requires with perl-test-needs.
---
 gnu/packages/perl.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index d03e67037b..baa29af22e 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -1158,19 +1158,18 @@ write accessor methods for your objects that perform standard tasks.")
 (define-public perl-class-method-modifiers
   (package
     (name "perl-class-method-modifiers")
-    (version "2.12")
+    (version "2.13")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://cpan/authors/id/E/ET/ETHER/"
                            "Class-Method-Modifiers-" version ".tar.gz"))
        (sha256
-        (base32
-         "1j3swa212wh14dq5r6zjarm2lzpx6mrdfplpjy65px8b09ri0k74"))))
+        (base32 "0qzx83mgd71hlc2m1kpw15dqsjzjq7b2cj3sdgg45a0q23vhfn5b"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-fatal" ,perl-test-fatal)
-       ("perl-test-requires" ,perl-test-requires)))
+       ("perl-test-needs" ,perl-test-needs)))
     (home-page "https://metacpan.org/release/Class-Method-Modifiers")
     (synopsis "Moose-like method modifiers")
     (description "Class::Method::Modifiers provides three modifiers:
-- 
cgit 1.4.1


From 8fc3116eebdcaff6723ef8cee76f8fcff729bff8 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 20:14:48 +0200
Subject: gnu: bind: Update to 9.14.7 [fixes CVE-2019-6475 & CVE-2019-6476].

* gnu/packages/dns.scm (isc-bind): Update to 9.14.7.
---
 gnu/packages/dns.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm
index 5167cf8379..b072a43e11 100644
--- a/gnu/packages/dns.scm
+++ b/gnu/packages/dns.scm
@@ -109,7 +109,7 @@ and BOOTP/TFTP for network booting of diskless machines.")
 (define-public isc-bind
   (package
     (name "bind")
-    (version "9.14.6")
+    (version "9.14.7")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -117,7 +117,7 @@ and BOOTP/TFTP for network booting of diskless machines.")
                     "/bind-" version ".tar.gz"))
               (sha256
                (base32
-                "1zpd47ckn5lf4qbscfkj7krngwn2gwsp961v5401h3lhxm0a0rw9"))))
+                "07998nx0yv3xy8c62b1ira9qygsgvpljwcgb47ypzxq8b57gb86f"))))
     (build-system gnu-build-system)
     (outputs `("out" "utils"))
     (inputs
-- 
cgit 1.4.1


From abca6cf85a7b43897fa8705ccf93794c40404f87 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Wed, 16 Oct 2019 21:26:53 +0200
Subject: gnu: emacs-lpy: Update to 0.1.0-3.43b401f.

* gnu/packages/emacs-xyz.scm (emacs-lpy): Update to 0.1.0-3.43b401f.
---
 gnu/packages/emacs-xyz.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index ddaaa01727..7287a4d8f9 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -5669,8 +5669,8 @@ state and will work even without lispy being enabled.")
       (license license:gpl3+))))
 
 (define-public emacs-lpy
-  (let ((commit "dfd9a0fc8f84674fc669eab2942cfa038d7dc590")
-        (revision "2"))
+  (let ((commit "43b401fe15f0f0d01edb189378b9498121e9f766")
+        (revision "3"))
     (package
       (name "emacs-lpy")
       (version (git-version "0.1.0" revision commit))
@@ -5682,7 +5682,7 @@ state and will work even without lispy being enabled.")
                (commit commit)))
          (sha256
           (base32
-           "15y1fvn1sjngpiqlq090hxqhmxp32f88rspfapwcisxa3hcg5r5a"))
+           "0xj1r7cn1rivaxhvawvmgx9fg3xilpfw4lkf2x2aqplr4s85ijas"))
          (file-name (git-file-name name version))))
       (propagated-inputs
        `(("emacs-zoutline" ,emacs-zoutline)
-- 
cgit 1.4.1


From 65ecf3a7afcfcb96ec90dc0cabb6b2d1a1d54398 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Wed, 16 Oct 2019 22:23:50 +0200
Subject: gnu: emacs-yasnippet: Don't use unstable tarball.

* gnu/packages/emacs-xyz.scm (emacs-yasnippet)[source]: Use GIT-FETCH and
  GIT-FILE-NAME.
[source]: Enable tests.
---
 gnu/packages/emacs-xyz.scm | 31 +++++++++++++++++++++++++++----
 1 file changed, 27 insertions(+), 4 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 7287a4d8f9..d9bceac497 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -8325,13 +8325,14 @@ been adapted to work with mu4e.")
     (name "emacs-yasnippet")
     (version "0.13.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/joaotavora/yasnippet/"
-                                  "archive/" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/joaotavora/yasnippet.git")
+                    (commit version)))
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "12ls2x17agzbrj1xynjbmfa11igqxia4hj4fv6fpr66yci2r1plc"))
+                "0fkkplycrw8f8r30hjjxl1wm7p2irq2ipzzc1g7cc52abaal796p"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -8345,6 +8346,28 @@ been adapted to work with mu4e.")
                      "))\n"))
                   #t))))
     (build-system emacs-build-system)
+    (arguments
+     `(#:tests? #t
+       #:test-command '("emacs" "--batch"
+                        "-l" "yasnippet-tests.el"
+                        "-f" "ert-run-tests-batch-and-exit")
+       ;; FIXME: one failing test
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'make-tests-writable
+           (lambda _
+             (make-file-writable "yasnippet-tests.el")
+             #t))
+         (add-before 'check 'delete-rebinding-test
+           (lambda _
+             (emacs-batch-edit-file "yasnippet-tests.el"
+               `(progn (progn (goto-char (point-min))
+                              (re-search-forward
+                               "ert-deftest test-rebindings")
+                              (beginning-of-line)
+                              (kill-sexp))
+                       (basic-save-buffer)))
+             #t)))))
     (home-page "https://github.com/joaotavora/yasnippet")
     (synopsis "Yet another snippet extension for Emacs")
     (description
-- 
cgit 1.4.1


From e63b31443b29b7793e73ab04798220edc6e564fc Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Wed, 16 Oct 2019 23:37:00 +0200
Subject: gnu: guix: Update to f63e493.

* gnu/packages/package-management.scm (guix): Update to f63e493.
---
 gnu/packages/package-management.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index cd1548b42d..202fb36174 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -110,8 +110,8 @@
   ;; Note: the 'update-guix-package.scm' script expects this definition to
   ;; start precisely like this.
   (let ((version "1.0.1")
-        (commit "88da011592a679776088b64b8d11575563c3f867")
-        (revision 8))
+        (commit "f63e49342bb8536d24b35ed57a2be978556f149e")
+        (revision 9))
     (package
       (name "guix")
 
@@ -127,7 +127,7 @@
                       (commit commit)))
                 (sha256
                  (base32
-                  "1dg71acxgn2kj6kqr1hpp4v5vg7f9vl7v4d8w8ykxv84brpw4sc8"))
+                  "18bxcbxcwxlgfgdapjyxg0d98c9g00ivjhhb2xyg42dbmbkh6nqy"))
                 (file-name (string-append "guix-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
-- 
cgit 1.4.1


From 749e38d762364eeb121a74f5abf4893d0bcb670e Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 21:14:31 +0200
Subject: gnu: python-pygithub: Update to 1.43.8.

* gnu/packages/python-xyz.scm (python-pygithub): Update to 1.43.8.
---
 gnu/packages/python-xyz.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 57d581990a..6a78b9d8c9 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2760,7 +2760,7 @@ to deprecate classes, functions or methods.")
 (define-public python-pygithub
   (package
     (name "python-pygithub")
-    (version "1.43.7")
+    (version "1.43.8")
     (source
      ;; We fetch from the Git repo because there are no tests in the PyPI
      ;; archive.
@@ -2771,8 +2771,7 @@ to deprecate classes, functions or methods.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32
-         "0ww92zz0ja9w6rw83vphmn8rwmcn6abg16j4q7zxjc0rrg2cfj9i"))))
+        (base32 "1625v558xga5mwhl9jqmibywy5qafmg1vqrirqz6zfq1la1d22mw"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
-- 
cgit 1.4.1


From eb80a3008f19cfb1e1292f2484cd67afd6aa81bf Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Wed, 16 Oct 2019 21:41:31 +0200
Subject: gnu: python-unidecode: Update to 1.1.1.

* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.1.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6a78b9d8c9..f27fa4f871 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2195,13 +2195,13 @@ cutting and pasting that code over and over.")
 (define-public python-unidecode
   (package
     (name "python-unidecode")
-    (version "1.1.0")
+    (version "1.1.1")
     (source (origin
              (method url-fetch)
              (uri (pypi-uri "Unidecode" version))
              (sha256
               (base32
-               "00pi0czzwvbf7djhkkjyvimj60wqdx0llbddzfnax650g9b8yscc"))))
+               "1s6cp2lv4m0f00hjckjz8p6m7d3n3v16jvg353llf5ia1iqsnsib"))))
     (build-system python-build-system)
     (home-page "https://pypi.python.org/pypi/Unidecode")
     (synopsis "ASCII transliterations of Unicode text")
-- 
cgit 1.4.1


From 321ef7c5b302b67468e16cecc83bf7f336159aa8 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Thu, 17 Oct 2019 01:27:38 +0200
Subject: gnu: emacs-ivy: Update to 0.13.0.

* gnu/packages/emacs-xyz.scm (emacs-ivy): Update to 0.13.0.
---
 gnu/packages/emacs-xyz.scm | 91 ++++++++++++++++++++++------------------------
 1 file changed, 43 insertions(+), 48 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index d9bceac497..e2f2f3cf1f 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -5311,59 +5311,54 @@ automatically.")
     (license license:gpl3+)))
 
 (define-public emacs-ivy
-  ;; The latest release version introduced a new feature, swiper-isearch, that
-  ;; generally works well but had some noticeable bugs; this later commit
-  ;; includes fixes for several of them.
-  (let ((commit "79333e9edfee38ec3b367c33711a68bdf7783259")
-        (revision "2"))
-    (package
-      (name "emacs-ivy")
-      (version (git-version "0.12.0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/abo-abo/swiper.git")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32
-           "0dyclc51sprhmr5fi4lylhwsrn8v1jgyblwk9ly60jj84lj6278z"))))
-      (build-system emacs-build-system)
-      (arguments
-       `(#:phases
-         (modify-phases %standard-phases
-           (add-after 'install 'install-doc
-             (lambda* (#:key outputs #:allow-other-keys)
-               (let* ((out (assoc-ref outputs "out"))
-                      (info (string-append out "/share/info")))
-                 (with-directory-excursion "doc"
-                   (invoke "makeinfo" "ivy.texi")
-                   (install-file "ivy.info" info)
-                   #t))))
-           (add-before 'check 'make-dummy-git-directory
-             (lambda _
-               (mkdir-p ".git")))
-           (add-after 'check 'delete-dummy-git-directory
-             (lambda _
-               (delete-file-recursively ".git"))))
-         #:tests? #t
-         #:test-command '("make" "test")))
-      (propagated-inputs
-       `(("emacs-hydra" ,emacs-hydra)))
-      (native-inputs
-       `(("texinfo" ,texinfo)
-         ("emacs-wgrep" ,emacs-wgrep)))
-      (home-page "http://oremacs.com/swiper/")
-      (synopsis "Incremental vertical completion for Emacs")
-      (description
-       "This package provides @code{ivy-read} as an alternative to
+  (package
+    (name "emacs-ivy")
+    (version "0.13.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/abo-abo/swiper.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0ghcwrg8a6r5q6fw2x8s08cwlmnz2d8qjhisnjwbnc2l4cgqpd9p"))))
+    (build-system emacs-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'install 'install-doc
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (info (string-append out "/share/info")))
+               (with-directory-excursion "doc"
+                 (invoke "makeinfo" "ivy.texi")
+                 (install-file "ivy.info" info)
+                 #t))))
+         (add-before 'check 'make-dummy-git-directory
+           (lambda _
+             (mkdir-p ".git")))
+         (add-after 'check 'delete-dummy-git-directory
+           (lambda _
+             (delete-file-recursively ".git"))))
+       #:tests? #t
+       #:test-command '("make" "test")))
+    (propagated-inputs
+     `(("emacs-hydra" ,emacs-hydra)))
+    (native-inputs
+     `(("texinfo" ,texinfo)
+       ("emacs-wgrep" ,emacs-wgrep)))
+    (home-page "http://oremacs.com/swiper/")
+    (synopsis "Incremental vertical completion for Emacs")
+    (description
+     "This package provides @code{ivy-read} as an alternative to
 @code{completing-read} and similar functions.  No attempt is made to determine
 the best candidate.  Instead, the user can navigate candidates with
 @code{ivy-next-line} and @code{ivy-previous-line}.  The matching is done by
 splitting the input text by spaces and re-building it into a regular
 expression.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public emacs-ivy-pass
   (let ((commit "5b523de1151f2109fdd6a8114d0af12eef83d3c5")
-- 
cgit 1.4.1


From ce756b97ecc9298624c51adbaa8c86a9f6768663 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 00:34:40 +0200
Subject: gnu: r-bayesm: Update to 3.1-4.

* gnu/packages/cran.scm (r-bayesm): Update to 3.1-4.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3c97b083ae..e1a1394f52 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -11629,14 +11629,13 @@ identifying outliers.")
 (define-public r-bayesm
   (package
     (name "r-bayesm")
-    (version "3.1-3")
+    (version "3.1-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bayesm" version))
        (sha256
-        (base32
-         "041ach2f2vrqzd5kz17v7wmkjz6z8cjjihpk4qvczm4cr9z85r2i"))))
+        (base32 "154glks7rsjkza0sfi1kj7wj727py9sl1ba6sswflwmwc9n226q6"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-rcpp" ,r-rcpp)
-- 
cgit 1.4.1


From b66f2211b9356933332ac4c27837eed46b35990e Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 02:20:11 +0200
Subject: gnu: tiled: Update to 1.2.5.

* gnu/packages/game-development.scm (tiled): Update to 1.2.5.
---
 gnu/packages/game-development.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm
index 7fc0122faa..eb92443e0d 100644
--- a/gnu/packages/game-development.scm
+++ b/gnu/packages/game-development.scm
@@ -445,7 +445,7 @@ support.")
 (define-public tiled
   (package
     (name "tiled")
-    (version "1.2.4")
+    (version "1.2.5")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -454,7 +454,7 @@ support.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "04v738h298pvcwb70mwd1r2yj7578f6gkfzs0165j9fqy7avwm18"))))
+                "14v2zfka2y3h0r0biw1rl59585lji5074x958s4xnb352jm5h9b9"))))
     (build-system gnu-build-system)
     (inputs
      `(("qtbase" ,qtbase)
-- 
cgit 1.4.1


From c0fb663e19c0201cee8d47b3b831880e8f9066f8 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 02:25:33 +0200
Subject: gnu: telegram-purple: Update to 1.4.2.

* gnu/packages/messaging.scm (telegram-purple): Update to 1.4.2.
---
 gnu/packages/messaging.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index 03cd529d8a..741b3285e2 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -1853,7 +1853,7 @@ messaging that aren’t available to clients that connect over XMPP.")
 (define-public telegram-purple
   (package
     (name "telegram-purple")
-    (version "1.4.1")
+    (version "1.4.2")
     (home-page "https://github.com/majn/telegram-purple")
     (source (origin
               (method git-fetch)
@@ -1863,7 +1863,7 @@ messaging that aren’t available to clients that connect over XMPP.")
                     (recursive? #t)))
               (sha256
                (base32
-                "0xlmqnlp2dqkgsq052d6dwgvqbwch2w0dnwpjslk5na4ih3lfr7k"))
+                "0imbzhhq9qbj6gvkckrnjhls2vvmmy8db7l6gsd7lng2pbfcn522"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
cgit 1.4.1


From a75c97ac08672edd6d9de43382b6b372125c4bea Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 02:27:15 +0200
Subject: gnu: kitty: Update to 0.14.6.

* gnu/packages/terminals.scm (kitty): Update to 0.14.6.
---
 gnu/packages/terminals.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index 98e964fa44..cd40ce3744 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -956,7 +956,7 @@ tmux.")
 (define-public kitty
   (package
     (name "kitty")
-    (version "0.14.5")
+    (version "0.14.6")
     (home-page "https://sw.kovidgoyal.net/kitty/")
     (source
      (origin
@@ -966,8 +966,7 @@ tmux.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32
-         "0qx3wj4n3zgjcpd1vjjwdlz8d1vp8bkxihsg2khlla1izandgxxa"))
+        (base32 "1rb5ys9xsdhd2qa3kz5gqzz111c6b14za98va6hlglk69wqlmb51"))
        (modules '((guix build utils)))
        (snippet
         '(begin
-- 
cgit 1.4.1


From 837b3c5d69456ddff4fda4b781a0c3924a462b5c Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 03:03:36 +0200
Subject: gnu: python-genshi: Update to 0.7.2.

* gnu/packages/python-web.scm (python-genshi): Update to 0.7.2.
---
 gnu/packages/python-web.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 6e924dd7e4..5c9da7c89d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -2613,7 +2613,7 @@ for Flask programs that are using @code{python-alembic}.")
 (define-public python-genshi
   (package
     (name "python-genshi")
-    (version "0.7.1")
+    (version "0.7.2")
     (source
      (origin
        (method git-fetch)
@@ -2622,7 +2622,7 @@ for Flask programs that are using @code{python-alembic}.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "01fx8fnpay5w048ppyjivg2dgfpp5rybn07y3pfsgj2knram3nhl"))))
+        (base32 "06rch30x10l105k5b6rahd839lkhmgrzn6691wbci0cb2fzps32w"))))
     (build-system python-build-system)
     (home-page "https://genshi.edgewall.org/")
     (synopsis "Toolkit for generation of output for the web")
-- 
cgit 1.4.1


From c3704ecaa537f96dfca2f820c3af5357a6208ce6 Mon Sep 17 00:00:00 2001
From: Vagrant Cascadian <vagrant@reproducible-builds.org>
Date: Wed, 16 Oct 2019 18:18:00 -0700
Subject: gnu: diffoscope: Update to 126.

* gnu/packages/diffoscope (diffoscope): Update to 126.
  [arguments]: Remove add-known-tools phase, merged upstream.
---
 gnu/packages/diffoscope.scm | 16 ++--------------
 1 file changed, 2 insertions(+), 14 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm
index 15d5a5787e..23acf0aeb8 100644
--- a/gnu/packages/diffoscope.scm
+++ b/gnu/packages/diffoscope.scm
@@ -67,7 +67,7 @@
   #:use-module (ice-9 match))
 
 (define-public diffoscope
-  (let ((version "125"))
+  (let ((version "126"))
     (package
       (name "diffoscope")
       (version version)
@@ -79,7 +79,7 @@
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "02kwisp9j63w27hhcwpdhg66dgxzz61q4fcyfz8z4hwlz6r0gyqy"))))
+                  "0lmn2116g5l05nns8qd2kwsnnd144zrqhs53fsr88inzf0mkqwhj"))))
       (build-system python-build-system)
       (arguments
        `(#:phases (modify-phases %standard-phases
@@ -90,18 +90,6 @@
                       (lambda _
                         (substitute* "setup.py"
                           (("'python-magic',") ""))))
-                    ;; Patch in support for known tools
-                    (add-after 'unpack 'add-known-tools
-                      (lambda _
-                        (substitute* "diffoscope/external_tools.py"
-                          (("'arch': 'enjarify'},")
-                           "'arch': 'enjarify', 'guix': 'enjarify'},"))
-                        (substitute* "diffoscope/external_tools.py"
-                          (("'arch': 'python-jsbeautifier'},")
-                           "'arch': 'python-jsbeautifier', 'guix': 'python-jsbeautifier'},"))
-                        (substitute* "diffoscope/external_tools.py"
-                          (("'arch': 'wabt'},")
-                           "'arch': 'wabt', 'guix': 'wabt'},"))))
                     ;; This test is broken because our `file` package has a
                     ;; bug in berkeley-db file type detection.
                     (add-after 'unpack 'remove-berkeley-test
-- 
cgit 1.4.1


From 19f219fef1b6389757e112ba7a618de262972530 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 05:43:06 +0200
Subject: gnu: linux-libre@4.4: Update to 4.4.196.

* gnu/packages/linux.scm (deblob-scripts-4.4)
(linux-libre-4.4-version, linux-libre-4.4-pristine-sources):
Update to 4.4.196.
---
 gnu/packages/linux.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 989d55f8aa..bb5caa62be 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -213,7 +213,7 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
 
 (define deblob-scripts-4.4
   (linux-libre-deblob-scripts
-   "4.4.194"
+   "4.4.196"
    (base32 "0x2j1i88am54ih2mk7gyl79g25l9zz4r08xhl482l3fvjj2irwbw")
    (base32 "12ac4g3ky8yma8sylmxvvysqvd4hnaqjiwmxrxb6wlxggfd7zkbx")))
 
@@ -397,10 +397,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
 
-(define-public linux-libre-4.4-version "4.4.194")
+(define-public linux-libre-4.4-version "4.4.196")
 (define-public linux-libre-4.4-pristine-source
   (let ((version linux-libre-4.4-version)
-        (hash (base32 "0kvlp2v4nvkilaanhpgwf8dkyfj24msaw0m38rbc4y51y69yhqvz")))
+        (hash (base32 "0vd7fra22ky4sqp6vamracp5xd4900md5vdx0n4i6dhkf03kz7hn")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.4)))
-- 
cgit 1.4.1


From c21d5141c28f4ea8a7179445da2eddfccae0c432 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:02:22 +0200
Subject: gnu: linux-libre@4.9: Update to 4.9.196.

* gnu/packages/linux.scm (deblob-scripts-4.9)
(linux-libre-4.9-version, linux-libre-4.9-pristine-sources):
Update to 4.9.196.
---
 gnu/packages/linux.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index bb5caa62be..1346bd3cb9 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -207,7 +207,7 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
 
 (define deblob-scripts-4.9
   (linux-libre-deblob-scripts
-   "4.9.195"
+   "4.9.196"
    (base32 "1wvldzlv7q2xdbadas87dh593nxr4a8p5n0f8zpm72lja6w18hmg")
    (base32 "0is8gn4qdd7h5l6lacvhqdch26lmrbgxfm8ab7fx8n85ha7y358w")))
 
@@ -389,10 +389,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
 
-(define-public linux-libre-4.9-version "4.9.195")
+(define-public linux-libre-4.9-version "4.9.196")
 (define-public linux-libre-4.9-pristine-source
   (let ((version linux-libre-4.9-version)
-        (hash (base32 "0s4xj8f1dpnz3fbrqmgwq02smhcrq1ni8hgn2bbfqvm15lm5dgjl")))
+        (hash (base32 "1vy6j9ycl5aw0dmj4n9kih5i8igybk0ilahlwbn30mlp9aq15az0")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
-- 
cgit 1.4.1


From 4f7dd07e5816bca47b54eeda82bafe499311b552 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:02:51 +0200
Subject: gnu: linux-libre@4.14: Update to 4.14.149.

* gnu/packages/linux.scm (deblob-scripts-4.14)
(linux-libre-4.14-version, linux-libre-4.14-pristine-sources):
Update to 4.14.149.
---
 gnu/packages/linux.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 1346bd3cb9..3d0c79132d 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -201,7 +201,7 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
 
 (define deblob-scripts-4.14
   (linux-libre-deblob-scripts
-   "4.14.147"
+   "4.14.149"
    (base32 "091jk9jkn9jf39bxpc7395bhcb7p96nkg3a8047380ki06lnfxh6")
    (base32 "0x9nd3hnyrm753cbgdqmy92mbnyw86w64g4hvyibnkpq5n7s3z9n")))
 
@@ -381,10 +381,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
 
-(define-public linux-libre-4.14-version "4.14.147")
+(define-public linux-libre-4.14-version "4.14.149")
 (define-public linux-libre-4.14-pristine-source
   (let ((version linux-libre-4.14-version)
-        (hash (base32 "04jvp05spszcxmkdsl21dylbcf76ns9bwxf1zlk4x7cxiil97mwg")))
+        (hash (base32 "15pjngy3j5vnisv462ll7wsg78qv7q2cz86da0bcwh446v9ap7g6")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
-- 
cgit 1.4.1


From e4d8d19470c231a0d070a4561786ce7d93e3178e Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:03:09 +0200
Subject: gnu: linux-libre@4.19: Update to 4.19.79.

* gnu/packages/linux.scm (deblob-scripts-4.19)
(linux-libre-4.19-version, linux-libre-4.19-pristine-sources):
Update to 4.19.79.
---
 gnu/packages/linux.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 3d0c79132d..8a03da9ba8 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -195,7 +195,7 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
 
 (define deblob-scripts-4.19
   (linux-libre-deblob-scripts
-   "4.19.77"
+   "4.19.79"
    (base32 "02zs405awaxydbapka4nz8h6lmnc0dahgczqsrs5s2bmzjyyqkcy")
    (base32 "1fyacg28aym6virxyn7wk99qil2fjbks3iwm7p3hxy51pccn34za")))
 
@@ -373,10 +373,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.2)))
 
-(define-public linux-libre-4.19-version "4.19.77")
+(define-public linux-libre-4.19-version "4.19.79")
 (define-public linux-libre-4.19-pristine-source
   (let ((version linux-libre-4.19-version)
-        (hash (base32 "1agksl35amjzc6g6d9zjwz6p5qir2cligb5c1d9s2bag9766jav1")))
+        (hash (base32 "0d2bcg0krahia2ylgqaxdppyr9idq2pi6y1si6h8n9sg6rj3a57i")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
-- 
cgit 1.4.1


From c478870b7f097f2dc750aeb0ea62e0e6e9a03cf1 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:12:26 +0200
Subject: gnu: linux-libre@5.2: Update to 5.2.21.

* gnu/packages/linux.scm (deblob-scripts-5.2)
(linux-libre-5.2-version, linux-libre-5.2-pristine-sources):
Update to 5.2.21.
---
 gnu/packages/linux.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 8a03da9ba8..ac9df8e938 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -189,7 +189,7 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
 
 (define deblob-scripts-5.2
   (linux-libre-deblob-scripts
-   "5.2.19"
+   "5.2.21"
    (base32 "076fwxlm6jq6z4vg1xq3kr474zz7qk71r90sf9dnfia3rw2pb4fa")
    (base32 "1vghzpvlsvz5q8baxjza8jdryjmcx61g2pmnm6dd1k7glr6jy1a9")))
 
@@ -365,10 +365,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.3)))
 
-(define-public linux-libre-5.2-version "5.2.19")
+(define-public linux-libre-5.2-version "5.2.21")
 (define-public linux-libre-5.2-pristine-source
   (let ((version linux-libre-5.2-version)
-        (hash (base32 "12mi857lyd5vj8qhj2f505hqnwzsnd829hxd78n9kk88iv1f966y")))
+        (hash (base32 "0f1mick15d0m7yhhhdwai03wmczvkm9cg38w2ivgmgysfpzy73ls")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.2)))
-- 
cgit 1.4.1


From 2c19c5d86e7728f6e8b6e52c4116b73ad6ab171b Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:12:37 +0200
Subject: gnu: linux-libre@5.3: Update to 5.3.6.

* gnu/packages/linux.scm (deblob-scripts-5.3)
(linux-libre-5.3-version, linux-libre-5.3-pristine-sources):
Update to 5.3.6.
---
 gnu/packages/linux.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index ac9df8e938..ad3c5972a8 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -183,7 +183,7 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
 
 (define deblob-scripts-5.3
   (linux-libre-deblob-scripts
-   "5.3.4"
+   "5.3.6"
    (base32 "15n09zq38d69y1wl28s3nasf3377qp2yil5b887zpqrm00dif7i4")
    (base32 "0nrimraf46nf6y1hwkg29fyl0a83wnj0mwq54ggxvffn9gk5h9pa")))
 
@@ -357,10 +357,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                         "linux-" version ".tar.xz"))
     (sha256 hash)))
 
-(define-public linux-libre-5.3-version "5.3.4")
+(define-public linux-libre-5.3-version "5.3.6")
 (define-public linux-libre-5.3-pristine-source
   (let ((version linux-libre-5.3-version)
-        (hash (base32 "0vi4bgcr921z5l6fbcrcgmhaji5gl2avpmp7njna6v0f7sxism0r")))
+        (hash (base32 "07zcfpj6ras7mmazny5xjwf8v6l5hwdgnla21sqpppl48ylj2h78")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.3)))
-- 
cgit 1.4.1


From 99791c53cb41661a366ded3355261b6196bbb28a Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:22:36 +0200
Subject: gnu: r-covr: Update to 3.3.2.

* gnu/packages/cran.scm (r-covr): Update to 3.3.2.
---
 gnu/packages/cran.scm | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e1a1394f52..77dd93aba9 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -15297,14 +15297,13 @@ function and interfaces to external frameworks.")
 (define-public r-covr
   (package
     (name "r-covr")
-    (version "3.3.1")
+    (version "3.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "covr" version))
        (sha256
-        (base32
-         "0fvd7v53w11x6kaw61hbml8n1j2ck9l2fv2wvqdsg689xic9rqcs"))))
+        (base32 "160w0m2d06kdd8dar57lpph39rxx55xwncbpl3b21l7j9drh1s5f"))))
     (properties `((upstream-name . "covr")))
     (build-system r-build-system)
     (propagated-inputs
-- 
cgit 1.4.1


From 0230b92fde80b2288028582434034ad0827a61b1 Mon Sep 17 00:00:00 2001
From: Tobias Geerinckx-Rice <me@tobias.gr>
Date: Thu, 17 Oct 2019 06:35:15 +0200
Subject: gnu: emacs-nhexl-mode: Update to 1.4.

* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode): Update to 1.4.
---
 gnu/packages/emacs-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index e2f2f3cf1f..82787bcb0f 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -18542,7 +18542,7 @@ as:
 (define-public emacs-nhexl-mode
   (package
     (name "emacs-nhexl-mode")
-    (version "1.3")
+    (version "1.4")
     (source
      (origin
        (method url-fetch)
@@ -18550,7 +18550,7 @@ as:
              "https://elpa.gnu.org/packages/nhexl-mode-"
              version ".el"))
        (sha256
-        (base32 "1fcy4ybr12dvswmzaqkv4798snb1x1y7ldxwrsgjv5sx7bb5j60z"))))
+        (base32 "1c2q4w6hkvc7z4026hiqdcsm2scd6q35x7b0dk80h8qicsbi14c8"))))
     (build-system emacs-build-system)
     (home-page "https://elpa.gnu.org/packages/nhexl-mode.html")
     (synopsis "Minor mode to edit files via hex-dump format")
-- 
cgit 1.4.1


From 1635670c501f52263fd6e1d537ed18fa61085177 Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Thu, 17 Oct 2019 11:52:04 +0200
Subject: gnu: emacs-sly: Update to 20191016.

* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20191016.
---
 gnu/packages/emacs-xyz.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 82787bcb0f..be3c55689b 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7048,8 +7048,8 @@ CIDER).")
 ;; There hasn't been a tag or release since 2016, so we take the latest
 ;; commit.
 (define-public emacs-sly
-  (let ((commit "29dccc0735283897a6dbd97e0b6828a45c2985e2")
-        (revision "2"))
+  (let ((commit "0a3b81770e46b93b9ffd8b9ac5254e0b88d1b13d")
+        (revision "3"))
     (package
       (name "emacs-sly")
       (version (git-version "1.0.0" revision commit))
@@ -7062,7 +7062,7 @@ CIDER).")
          (file-name (git-file-name name version))
          (sha256
           (base32
-           "0d0skgyqn422130xn8lrdp04m5cjk3sl18w6lf2wrmrndc1crqxk"))))
+           "1q5ga4mxa0ffa4zb2y0zfwmgzjggx4fn1y4bl2x7ac6ynvb32zkj"))))
       (build-system emacs-build-system)
       (native-inputs
        `(("texinfo" ,texinfo)))
-- 
cgit 1.4.1


From 7d66e87a5d297f24ebb3883a4f5bbea46fdfcdac Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Thu, 17 Oct 2019 11:53:43 +0200
Subject: gnu: emacs-evil-collection: Update to 20191017.

* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20191017.
---
 gnu/packages/emacs-xyz.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index be3c55689b..97fd4f91f9 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -7349,8 +7349,8 @@ extensions.")
     (license license:gpl3+)))
 
 (define-public emacs-evil-collection
-  (let ((commit "bf4200a57c81c2302a3bf5b2058d74c6f90a3e6c")
-        (revision "11"))
+  (let ((commit "38e916d5d56b391f1ad4c72ad3909491e86cda3c")
+        (revision "12"))
     (package
       (name "emacs-evil-collection")
       (version (git-version "0.0.3" revision commit))
@@ -7362,7 +7362,7 @@ extensions.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "01xw0m5gj14ly42y8ikvldpab5my28sylf6l9gvwd5cf909bd445"))))
+                  "00a1ya3c92ymhfj4ai1ygljnxa147d4cgi6jmvccngicphn99782"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-evil" ,emacs-evil)
-- 
cgit 1.4.1


From 0cfdc7506be2d879d2b76050a4f4188422682831 Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Thu, 17 Oct 2019 12:02:44 +0200
Subject: gnu: Add emacs-helm-sly.

* gnu/packages/emacs-xyz.scm (emacs-helm-sly): New variable.
---
 gnu/packages/emacs-xyz.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 97fd4f91f9..4ced731edf 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -16346,6 +16346,36 @@ correctly.")
 @end itemize\n")
     (license license:gpl3+)))
 
+(define-public emacs-helm-sly
+  (package
+    (name "emacs-helm-sly")
+    (version "0.4.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/emacs-helm/helm-sly")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0agsigwnxm1czi7pzcfbjaks8kg63xskqqavvfqjwzj9xakh5id2"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("emacs-helm" ,emacs-helm)
+       ("emacs-sly" ,emacs-sly)))
+    (home-page "https://github.com/emacs-helm/helm-sly")
+    (synopsis "Helm for SLY, a Common Lisp interaction mode for Emacs")
+    (description "Helm-SLY defines a few new commands:
+
+@itemize
+@item helm-sly-list-connections: Yet another Lisp connection list with Helm.
+@item: helm-sly-apropos: Yet another @command{apropos} with Helm.
+@item helm-sly-mini: Like @command{helm-sly-list-connections}, but include an
+extra source of Lisp-related buffers, like the events buffer or the scratch
+buffer.
+@end itemize\n")
+    (license license:gpl3+)))
+
 (define-public emacs-gtk-look
   (package
     (name "emacs-gtk-look")
-- 
cgit 1.4.1


From ba95233f84189ec0a51cde6aedd704a8f058d3e2 Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Thu, 17 Oct 2019 11:28:13 +0200
Subject: gnu: ucx: Disable optimizations specific to the build machine.

* gnu/packages/fabric-management.scm (ucx)[arguments]: Replace
"--enable-optimizations" with "--disable-optimizations".
---
 gnu/packages/fabric-management.scm | 23 ++++++++++++++---------
 1 file changed, 14 insertions(+), 9 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 9b30b09df5..e822a3fb20 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -193,16 +193,21 @@ testing InfiniBand networks.")
                 "0x3clvy716i7va4m4adgx6ihjsfnzrkdizhxz5v52944dkglpc8n"))))
     (build-system gnu-build-system)
     (arguments
-     '( ;; These are the flags found in 'contrib/configure-release'.
-       #:configure-flags (list "--enable-optimizations"
-                               "--disable-logging"
-                               "--disable-debug"
-                               "--disable-assertions"
-                               "--disable-params-check"
+     '( ;; These are some of the flags found in 'contrib/configure-release'.
+       #:configure-flags (list
+                          ;; XXX: Disable optimizations specific to the build
+                          ;; machine (AVX, etc.)  There's apparently no way to
+                          ;; have them picked up at load time.
+                          "--disable-optimizations"
 
-                               (string-append "--with-rdmacm="
-                                              (assoc-ref %build-inputs
-                                                         "rdma-core")))))
+                          "--disable-logging"
+                          "--disable-debug"
+                          "--disable-assertions"
+                          "--disable-params-check"
+
+                          (string-append "--with-rdmacm="
+                                         (assoc-ref %build-inputs
+                                                    "rdma-core")))))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
-- 
cgit 1.4.1


From 5fdf3737019bd07a1f12b4c4c524d410425e5b0c Mon Sep 17 00:00:00 2001
From: Ludovic Courtès <ludo@gnu.org>
Date: Thu, 17 Oct 2019 11:31:38 +0200
Subject: gnu: ucx: Build verbosely.

* gnu/packages/fabric-management.scm (ucx)[arguments]: Add #:make-flags.
---
 gnu/packages/fabric-management.scm | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index e822a3fb20..56ff18f4c5 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -207,7 +207,10 @@ testing InfiniBand networks.")
 
                           (string-append "--with-rdmacm="
                                          (assoc-ref %build-inputs
-                                                    "rdma-core")))))
+                                                    "rdma-core")))
+
+       ;; Be verbose so that compiler flags are displayed.
+       #:make-flags '("V=1")))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
-- 
cgit 1.4.1


From bfaa06171842225c8bf4c839e35ac36a0b2c2d59 Mon Sep 17 00:00:00 2001
From: Tanguy Le Carrour <tanguy@bioneland.org>
Date: Thu, 17 Oct 2019 10:09:54 +0200
Subject: gnu: Add minisign.

* gnu/packages/crypto.scm (minisign): New public variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
---
 gnu/packages/crypto.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index 9592d18011..e8cf8157d5 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -13,6 +13,7 @@
 ;;; Copyright © 2018 Nicolò Balzarotti <nicolo@nixo.xyz>
 ;;; Copyright © 2018 Tim Gesthuizen <tim.gesthuizen@yahoo.de>
 ;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
+;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -974,3 +975,36 @@ pre-shared keys out of band.  It is designed to handle large amounts of data
 quickly by using all your CPU cores and hardware acceleration.")
     (home-page "https://github.com/vstakhov/hpenc")
     (license license:bsd-3)))
+
+(define-public minisign
+  (package
+    (name "minisign")
+    (version "0.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri
+        (string-append "https://github.com/jedisct1/minisign/releases/download/"
+                       version "/minisign-" version ".tar.gz"))
+       (sha256
+        (base32
+         "10hhgwxf9rcdlr00shrkcyxndrc22dh5lj8k5z27xg3nc0jba3hk"))))
+    (build-system cmake-build-system)
+    (arguments
+     ; No test suite
+     `(#:tests? #f))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("libsodium" ,libsodium)))
+    (home-page "https://jedisct1.github.io/minisign")
+    (synopsis "Tool to sign files and verify signatures")
+    (description
+     "Minisign is a dead simple tool to sign files and verify signatures.  It is
+portable, lightweight, and uses the highly secure Ed25519 public-key signature
+system.  Signature written by minisign can be verified using OpenBSD's
+signify tool: public key files and signature files are compatible.  However,
+minisign uses a slightly different format to store secret keys.  Minisign
+signatures include trusted comments in addition to untrusted comments.
+Trusted comments are signed, thus verified, before being displayed.")
+    (license license:isc)))
-- 
cgit 1.4.1


From bf67988070f61b048cad15f6eb53791e048a1372 Mon Sep 17 00:00:00 2001
From: Leo Famulari <leo@famulari.name>
Date: Thu, 17 Oct 2019 15:02:52 -0400
Subject: gnu: Exim: Update to 4.92.3 [fixes CVE-2019-16928].

* gnu/packages/mail.scm (exim): Update to 4.92.3.
---
 gnu/packages/mail.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index a994e4d344..64e8b771fc 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -1197,7 +1197,7 @@ delivery.")
 (define-public exim
   (package
     (name "exim")
-    (version "4.92.2")
+    (version "4.92.3")
     (source
      (origin
        (method url-fetch)
@@ -1206,7 +1206,8 @@ delivery.")
                   (string-append "https://ftp.exim.org/pub/exim/exim4/old/exim-"
                                  version ".tar.bz2")))
        (sha256
-        (base32 "1xnc5rdcg5mcrvjqp506a9frmcr89jwsh4c5vbks46awyz1rfzsm"))))
+        (base32
+         "0d0h0j9pl3yf089sc59ia60m3dqnkb3qh1qaz6vxfg2ja2mnm5i9"))))
     (build-system gnu-build-system)
     (inputs
      `(("bdb" ,bdb-5.3) ; ‘#error Version 6 and later BDB API is not supported’
-- 
cgit 1.4.1


From 9fbd0b17691dbe5f9ef76c5def4c1588bccd4a53 Mon Sep 17 00:00:00 2001
From: Julien Lepiller <julien@lepiller.eu>
Date: Thu, 17 Oct 2019 20:17:12 +0200
Subject: gnu: neovim: Remove unneeded reference.

gnu/packages/vim.scm (neovim)[arguments]: Add a phase to remove a
reference to the compiler.
---
 gnu/packages/vim.scm | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index 9515b1765b..63bd50390c 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -775,7 +775,15 @@ are detected, the user is notified.")))
                        (string-join (map lua-path-spec lua-inputs) ";"))
                (setenv "LUA_CPATH"
                        (string-join (map lua-cpath-spec lua-inputs) ";"))
-               #t))))))
+               #t)))
+         (add-after 'unpack 'prevent-embedding-gcc-store-path
+           (lambda _
+             ;; nvim remembers its build options, including the compiler with
+             ;; its complete path.  This adds gcc to the closure of nvim, which
+             ;; doubles its size.  We remove the refirence here.
+             (substitute* "cmake/GetCompileFlags.cmake"
+               (("\\$\\{CMAKE_C_COMPILER\\}") "/gnu/store/.../bin/gcc"))
+             #t)))))
     (inputs
      `(("libuv" ,libuv)
        ("msgpack" ,msgpack)
-- 
cgit 1.4.1


From 919c5e1b43ca440fa0128f21f7d75780b6c238a4 Mon Sep 17 00:00:00 2001
From: Danny Milosavljevic <dannym@scratchpost.org>
Date: Fri, 18 Oct 2019 01:49:58 +0200
Subject: gnu: sunxi-tools: Adapt to cross-compiler toolchain changes.

* gnu/packages/admin.scm (sunxi-tools)[arguments]<#:phases>[set-environment-up]:
Adapt to cross-compiler toolchain changes.
---
 gnu/packages/admin.scm | 20 +++++++++++---------
 1 file changed, 11 insertions(+), 9 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 21d105bfe5..82f1bb4eb8 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -2606,22 +2606,24 @@ Kerberos and Heimdal and FAST is supported with recent MIT Kerberos.")
                                           environment-variable-names)
                (for-each
                 (lambda (env-name)
-                  (let* ((env-value (getenv env-name))
-                         (search-path (search-path-as-string->list env-value))
-                         (new-search-path (filter filter-predicate
-                                                  search-path))
-                         (new-env-value (list->search-path-as-string
-                                         new-search-path ":")))
-                    (setenv env-name new-env-value)))
+                  (when (getenv env-name)
+                    (let* ((env-value (getenv env-name))
+                           (search-path (search-path-as-string->list env-value))
+                           (new-search-path (filter filter-predicate
+                                                    search-path))
+                           (new-env-value (list->search-path-as-string
+                                           new-search-path ":")))
+                      (setenv env-name new-env-value))))
                 environment-variable-names))
+             (setenv "CROSS_CPATH" (getenv "CPATH"))
              (setenv "CROSS_C_INCLUDE_PATH" (getenv "C_INCLUDE_PATH"))
              (setenv "CROSS_CPLUS_INCLUDE_PATH" (getenv "CPLUS_INCLUDE_PATH"))
              (setenv "CROSS_LIBRARY_PATH" (getenv "LIBRARY_PATH"))
              (filter-environment! cross?
-              '("CROSS_C_INCLUDE_PATH" "CROSS_CPLUS_INCLUDE_PATH"
+              '("CROSS_CPATH" "CROSS_C_INCLUDE_PATH" "CROSS_CPLUS_INCLUDE_PATH"
                 "CROSS_LIBRARY_PATH"))
              (filter-environment! (lambda (e) (not (cross? e)))
-              '("C_INCLUDE_PATH" "CPLUS_INCLUDE_PATH"
+              '("CPATH" "C_INCLUDE_PATH" "CPLUS_INCLUDE_PATH"
                 "LIBRARY_PATH"))
              #t))
          (replace 'build
-- 
cgit 1.4.1


From fec41bceb8d98f74baa2392d45bb46102bad5ddf Mon Sep 17 00:00:00 2001
From: Joseph LaFreniere <joseph@lafreniere.xyz>
Date: Tue, 15 Oct 2019 22:12:32 -0500
Subject: gnu: Add emacs-minibuffer-line.

* gnu/packages/emacs-xyz.scm (emacs-minibuffer-line): New variable.
---
 gnu/packages/emacs-xyz.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 4ced731edf..31899c1f86 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -19430,3 +19430,29 @@ nondestructively, and computes the dimmed faces dynamically such that your
 overall color scheme is shown in a muted form without requiring you to define
 what is a \"dim\" version of every face.")
     (license license:gpl3+)))
+
+(define-public emacs-minibuffer-line
+  (package
+    (name "emacs-minibuffer-line")
+    (version "0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://elpa.gnu.org/packages/minibuffer-line-"
+             version
+             ".el"))
+       (sha256
+        (base32 "1ny4iirp26na5118wfgxlv6fxlrdclzdbd9m0lkrv51w0qw7spil"))))
+    (build-system emacs-build-system)
+    (home-page "https://elpa.gnu.org/packages/minibuffer-line.html")
+    (synopsis "Display status info in the minibuffer window")
+    (description
+     "This package lets you display various status information in the
+minibuffer window instead of the mode-line.  Of course, this is only displayed
+when the minibuffer window is not already used for other things (e.g. a
+minibuffer or an each area message).
+
+The contents and aspect is controlled by the @code{minibuffer-line-format}
+variable and the @code{minibuffer-line} face.")
+    (license license:gpl3+)))
-- 
cgit 1.4.1


From d133bdbcaf6f40423a60ef475265b3accf7516f6 Mon Sep 17 00:00:00 2001
From: Brian Leung <leungbk@mailfence.com>
Date: Fri, 18 Oct 2019 00:26:21 -0700
Subject: gnu: emacs-helm-sly: Fix hash.

* gnu/packages/emacs-xyz.scm (emacs-helm-sly): Fix hash.
---
 gnu/packages/emacs-xyz.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 31899c1f86..729e2c7a33 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -16358,7 +16358,7 @@ correctly.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0agsigwnxm1czi7pzcfbjaks8kg63xskqqavvfqjwzj9xakh5id2"))))
+                "0b2dx9nzh5233lkix3lz81c9cv626lk2hjpcjiikwvyp6y0q92ys"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-helm" ,emacs-helm)
-- 
cgit 1.4.1


From 99190575a0a37115a11e561ae8a9bbdb5398dfd8 Mon Sep 17 00:00:00 2001
From: Florian Pelz <pelzflorian@pelzflorian.de>
Date: Fri, 18 Oct 2019 08:52:12 +0200
Subject: Fix documentation of delete_after in the getmail service.

* doc/guix.texi (Getmail service): Remove the word `not'.
* gnu/services/getmail.scm (getmail-options-configuration): Ditto.
---
 doc/guix.texi            | 2 +-
 gnu/services/getmail.scm | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/doc/guix.texi b/doc/guix.texi
index e99ca3f563..6eccbb971f 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -17414,7 +17414,7 @@ Defaults to @samp{#f}.
 
 @deftypevr {@code{getmail-options-configuration} parameter} non-negative-integer delete-after
 Getmail will delete messages this number of days after seeing them, if
-they have not been delivered.  This means messages will be left on the
+they have been delivered.  This means messages will be left on the
 server this number of days after delivering them.  A value of @samp{0}
 disabled this feature.
 
diff --git a/gnu/services/getmail.scm b/gnu/services/getmail.scm
index b807bb3a5d..b3d86cb65c 100644
--- a/gnu/services/getmail.scm
+++ b/gnu/services/getmail.scm
@@ -176,8 +176,8 @@ server.")
   (delete-after
    (non-negative-integer 0)
    "Getmail will delete messages this number of days after seeing them, if
-they have not been delivered.  This means messages will be left on the server
-this number of days after delivering them.  A value of @samp{0} disabled this
+they have been delivered.  This means messages will be left on the server this
+number of days after delivering them.  A value of @samp{0} disabled this
 feature.")
   (delete-bigger-than
    (non-negative-integer 0)
-- 
cgit 1.4.1


From 3de2031097a6804a0b899f34b49fb130e43dd337 Mon Sep 17 00:00:00 2001
From: Guillaume Le Vaillant <glv@posteo.net>
Date: Tue, 15 Oct 2019 10:37:09 +0200
Subject: gnu: cl+ssl: Update to 0.0.0-1.141ae91.

* gnu/packages/lisp.scm (sbcl-cl+ssl): Update to 0.0.0-1.141ae91.
  [inputs]: Add alexandria and trivial-features.
---
 gnu/packages/lisp.scm | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 2bdebed04e..34e935bda5 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -3992,7 +3992,7 @@ RFC 1321 by R. Rivest, published April 1992.")
   (sbcl-package->cl-source-package sbcl-md5))
 
 (define-public sbcl-cl+ssl
-  (let ((commit "b81c1135cf5700e870ce2573d5035d249e491788")
+  (let ((commit "141ae91416bc40f1618dc07e48429b84388aa599")
         (revision "1"))
     (package
       (name "sbcl-cl+ssl")
@@ -4005,7 +4005,7 @@ RFC 1321 by R. Rivest, published April 1992.")
                (commit commit)))
          (file-name (git-file-name "cl+ssl" version))
          (sha256
-          (base32 "1845i1pafmqb6cdlr53yaqy67kjrhkvbx6c37ca15cw70vhdr3z9"))))
+          (base32 "1s0hg1h9sf8q89v0yrxmzg5f5sng29rgx3n21r9h9yql8351myan"))))
       (build-system asdf-build-system/sbcl)
       (arguments
        '(#:phases
@@ -4022,7 +4022,9 @@ RFC 1321 by R. Rivest, published April 1992.")
          ("sbcl-trivial-gray-streams" ,sbcl-trivial-gray-streams)
          ("sbcl-flexi-streams" ,sbcl-flexi-streams)
          ("sbcl-bordeaux-threads" ,sbcl-bordeaux-threads)
-         ("sbcl-trivial-garbage" ,sbcl-trivial-garbage)))
+         ("sbcl-trivial-garbage" ,sbcl-trivial-garbage)
+         ("sbcl-alexandria" ,sbcl-alexandria)
+         ("sbcl-trivial-features" ,sbcl-trivial-features)))
       (home-page "http://common-lisp.net/project/cl-plus-ssl/")
       (synopsis "Common Lisp bindings to OpenSSL")
       (description
-- 
cgit 1.4.1


From f733862cc9307b155f23c101b274891255236304 Mon Sep 17 00:00:00 2001
From: Guillaume Le Vaillant <glv@posteo.net>
Date: Tue, 15 Oct 2019 13:54:15 +0200
Subject: gnu: Add arrows.

* gnu/packages/lisp.scm (cl-arrows, sbcl-arrows, ecl-arrows): New variables.
---
 gnu/packages/lisp.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 34e935bda5..77b36ef5bd 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -7720,3 +7720,35 @@ supplement, not a competitor, to Alexandria.")
 
 (define-public cl-serapeum
   (sbcl-package->cl-source-package sbcl-serapeum))
+
+(define-public sbcl-arrows
+  (let ((commit "df7cf0067e0132d9697ac8b1a4f1b9c88d4f5382")
+        (revision "0"))
+    (package
+      (name "sbcl-arrows")
+      (version (git-version "0.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://gitlab.com/Harleqin/arrows.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "042k9vkssrqx9nhp14wdzm942zgdxvp35mba0p2syz98i75im2yy"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs
+       `(("hu.dwim.stefil" ,sbcl-hu.dwim.stefil)))
+      (synopsis "Clojure-like arrow macros for Common Lisp")
+      (description
+       "This library implements the @code{->} and @code{->>} macros from
+Clojure, as well as several expansions on the idea.")
+      (home-page "https://gitlab.com/Harleqin/arrows")
+      (license license:public-domain))))
+
+(define-public cl-arrows
+  (sbcl-package->cl-source-package sbcl-arrows))
+
+(define-public ecl-arrows
+  (sbcl-package->ecl-package sbcl-arrows))
-- 
cgit 1.4.1


From 55af9fe0f4cee368565ffdc5a07856ee8674a26f Mon Sep 17 00:00:00 2001
From: Guillaume Le Vaillant <glv@posteo.net>
Date: Thu, 17 Oct 2019 16:43:10 +0200
Subject: gnu: sbcl-trivial-mimes: Fix 'fix-paths' phase.

* gnu/packages/lisp.scm (sbcl-trivial-mimes)[arguments]: Use '(%lisp-type)'
  instead of hard coded 'sbcl' in 'fix-paths' phase.
---
 gnu/packages/lisp.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 77b36ef5bd..6c4491a985 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -5132,7 +5132,9 @@ performance and simplicity in mind.")
                    ((anchor all)
                     (string-append
                      anchor "\n"
-                     "(asdf:system-relative-pathname :trivial-mimes \"../../share/common-lisp/sbcl-source/trivial-mimes/mime.types\")")))))))))
+                     "(asdf:system-relative-pathname :trivial-mimes "
+                     "\"../../share/common-lisp/" (%lisp-type)
+                     "-source/trivial-mimes/mime.types\")")))))))))
       (native-inputs
        `(("stefil" ,sbcl-hu.dwim.stefil)))
       (inputs
-- 
cgit 1.4.1


From 85a898536c14c718c259e6c4ec07922eda3ab9cc Mon Sep 17 00:00:00 2001
From: Guillaume Le Vaillant <glv@posteo.net>
Date: Thu, 17 Oct 2019 16:43:11 +0200
Subject: gnu: Add ecl-trivial-mimes.

* gnu/packages/lisp.scm (ecl-trivial-mimes): New variable.
---
 gnu/packages/lisp.scm | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 6c4491a985..a868e0123b 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -5149,6 +5149,9 @@ mime-type of a file.")
 (define-public cl-trivial-mimes
   (sbcl-package->cl-source-package sbcl-trivial-mimes))
 
+(define-public ecl-trivial-mimes
+  (sbcl-package->ecl-package sbcl-trivial-mimes))
+
 (define-public sbcl-lack-middleware-static
   (let ((commit "abff8efeb0c3a848e6bb0022f2b8b7fa3a1bc88b")
         (revision "1"))
-- 
cgit 1.4.1


From 63729d92774a07c66c06010fee4a6e6a138b277a Mon Sep 17 00:00:00 2001
From: Guillaume Le Vaillant <glv@posteo.net>
Date: Thu, 17 Oct 2019 16:43:12 +0200
Subject: gnu: Add ecl-dexador.

* gnu/packages/lisp.scm (ecl-dexador): New variable.
---
 gnu/packages/lisp.scm | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index a868e0123b..609c15f214 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -6258,6 +6258,9 @@ cookie headers, cookie creation, cookie jar creation and more.")
 neat APIs and connection-pooling.  It is meant to supersede Drakma.")
       (license license:expat))))
 
+(define-public ecl-dexador
+  (sbcl-package->ecl-package sbcl-dexador))
+
 (define-public sbcl-lisp-namespace
   (let ((commit "28107cafe34e4c1c67490fde60c7f92dc610b2e0")
         (revision "1"))
-- 
cgit 1.4.1


From ad8aaf47f50e3b0360b8c27557753333ae44ad5f Mon Sep 17 00:00:00 2001
From: "Boris A. Dekshteyn" <boris.dekshteyn@gmail.com>
Date: Fri, 16 Aug 2019 13:47:53 +1200
Subject: gnu: Add FontManager.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/fontutils.scm (fontmanager): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/fontutils.scm | 51 +++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 50 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index e355f7bb89..aba6f07537 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -46,6 +46,9 @@
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages xml)
+  #:use-module (gnu packages sqlite)
+  #:use-module (gnu packages gnome)
+  #:use-module (gnu packages freedesktop)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
@@ -53,7 +56,8 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
-  #:use-module (guix build-system python))
+  #:use-module (guix build-system python)
+  #:use-module (guix build-system meson))
 
 (define-public freetype
   (package
@@ -725,3 +729,48 @@ maintain the Noto Fonts project.")
                    (license:non-copyleft
                     "file://sample_texts/attributions.txt"
                     "See sample_texts/attributions.txt in the distribution.")))))
+
+(define-public fontmanager
+  (package
+   (name "fontmanager")
+   (version "0.7.5")
+   (source
+    (origin
+      (method git-fetch)
+      (uri (git-reference
+            (url "https://github.com/FontManager/font-manager")
+            (commit version)))
+      (file-name (git-file-name name version))
+      (sha256
+       (base32
+        "16hma8rrkam6ngn5vbdaryn31vdixvii6920g9z928gylz9xkd3g"))))
+   (build-system meson-build-system)
+   (arguments
+    `(#:glib-or-gtk? #t
+      #:build-type "release"
+      #:configure-flags
+      (list (string-append "-Dc_link_args=-Wl,-rpath="
+                           (assoc-ref %outputs "out")
+                           "/lib/font-manager"))))
+   (native-inputs
+    `(("pkg-config" ,pkg-config)
+      ("vala" ,vala)
+      ("yelp-tools" ,yelp-tools)
+      ("gettext" ,gettext-minimal)
+      ("glib" ,glib "bin")
+      ("gobject-introspection" ,gobject-introspection)
+      ("desktop-file-utils" ,desktop-file-utils)))
+   (inputs
+    `(("json-glib" ,json-glib)
+      ("sqlite-with-column-metadata" ,sqlite-with-column-metadata)
+      ("fonconfig" ,fontconfig)
+      ("freetype" ,freetype)
+      ("gtk+" ,gtk+)))
+   (home-page "https://fontmanager.github.io/")
+   (synopsis "Simple font management for GTK+ desktop environments")
+   (description "Font Manager is intended to provide a way for users to
+easily manage desktop fonts, without having to resort to command-line
+tools or editing configuration files by hand.
+While designed primarily with the GNOME Desktop Environment in mind, it should
+work well with other GTK+ desktop environments.")
+   (license license:gpl3+)))
-- 
cgit 1.4.1


From b080b6d9378a6b23edfc46dcd4a96eb796db2927 Mon Sep 17 00:00:00 2001
From: Tonton <tonton@riseup.net>
Date: Tue, 15 Oct 2019 19:14:16 +0200
Subject: gnu: Add batctl.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* gnu/packages/networking.scm (batctl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
---
 gnu/packages/networking.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index 17c7c65a25..d9134ff910 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -31,6 +31,7 @@
 ;;; Copyright © 2019 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2019 Timotej Lazar <timotej.lazar@araneo.si>
 ;;; Copyright © 2019 Brice Waegeneire <brice@waegenei.re>
+;;; Copyright © 2019 Tonton <tonton@riseup.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2641,3 +2642,37 @@ Supplicant.  It optimizes resource utilization by not depending on any external
 libraries and instead utilizing features provided by the Linux kernel to the
 maximum extent possible.")
     (license license:lgpl2.1+)))
+
+(define-public batctl
+  (package
+   (name "batctl")
+   (version "2019.3")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (string-append "https://downloads.open-mesh.org/batman/releases/batman-adv-"
+                         version "/batctl-" version ".tar.gz"))
+     (sha256
+      (base32
+       "0307a01n72kg7vcm60mi8jna6bydiin2cr3ylrixra1596hkzn9b"))))
+   (inputs
+    `(("libnl" ,libnl)))
+   (native-inputs
+    `(("pkg-config" ,pkg-config)))
+   (build-system gnu-build-system)
+   (arguments
+    `(#:tests? #f
+      ;; Batctl only has a makefile. Thus we disable tests and
+      ;; configuration, passing in a few make-flags.
+      #:phases (modify-phases %standard-phases (delete 'configure))
+      #:make-flags
+      (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
+            (string-append "PKG_CONFIG=" (assoc-ref %build-inputs "pkg-config")
+                           "/bin/pkg-config")
+            "CC=gcc")))
+   (home-page "https://www.open-mesh.org/projects/batman-adv/wiki/Wiki")
+   (synopsis "Management tool for the mesh networking BATMAN protocol")
+   (description "This package provides a control tool for the
+B.A.T.M.A.N. mesh networking routing protocol provided by the Linux kernel
+module @code{batman-adv}, for Layer 2.")
+   (license license:gpl2+)))
-- 
cgit 1.4.1


From 6c16f1a5b34368d0d800e93c95d1787c113ee68f Mon Sep 17 00:00:00 2001
From: Pierre Neidhardt <mail@ambrevar.xyz>
Date: Fri, 18 Oct 2019 11:46:34 +0200
Subject: gnu: lisp: Add most missing source package for Common Lisp libraries.

* gnu/packages/lisp.scm (cl-parse-js, cl-parse-number, cl-iterate, cl-uglify,
  cl-cffi, cl-sqlite, cl-cffi-gtk, cl-webkit, cl-iolib, cl-ieee-floats,
  cl-xml, cl-reexport, cl-dexador, cl-cookie, cl-lisp-namespace,
  cl-trivial-cltl2, cl-introspect-environment, cl-type-i, cl-optima,
  cl-fare-quasiquote, cl-trivia, cl-mk-string-metrics, cl-str, cl-xmlspam):
  New variables.
---
 gnu/packages/lisp.scm | 75 ++++++++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 74 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 609c15f214..bb2a589578 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -1463,6 +1463,9 @@ multiple inspectors with independent history.")
 JavaScript (ECMAScript 3).  It has basic support for ECMAScript 5.")
       (license license:zlib))))
 
+(define-public cl-parse-js
+  (sbcl-package->cl-source-package sbcl-parse-js))
+
 (define-public sbcl-parse-number
   (package
     (name "sbcl-parse-number")
@@ -1486,6 +1489,9 @@ the string into one of the standard Common Lisp number types, if possible, or
 else @code{parse-number} signals an error of type @code{invalid-number}.")
     (license license:bsd-3)))
 
+(define-public cl-parse-number
+  (sbcl-package->cl-source-package sbcl-parse-number))
+
 (define-public sbcl-iterate
   (package
     (name "sbcl-iterate")
@@ -1515,6 +1521,9 @@ It is similar to the @code{CL:LOOP} macro, with these distinguishing marks:
 @end itemize\n")
     (license license:expat)))
 
+(define-public cl-iterate
+  (sbcl-package->cl-source-package sbcl-iterate))
+
 (define-public sbcl-cl-uglify-js
   ;; There have been many bug fixes since the 2010 release.
   (let ((commit "429c5e1d844e2f96b44db8fccc92d6e8e28afdd5")
@@ -1556,6 +1565,9 @@ compressor.  It works on data produced by @code{parse-js} to generate a
 @end itemize\n")
       (license license:zlib))))
 
+(define-public cl-uglify-js
+  (sbcl-package->cl-source-package sbcl-cl-uglify-js))
+
 (define-public uglify-js
   (package
     (inherit sbcl-cl-uglify-js)
@@ -3128,6 +3140,9 @@ package.")
        ("bordeaux-threads" ,sbcl-bordeaux-threads)
        ,@(package-native-inputs sbcl-cffi-bootstrap)))))
 
+(define-public cl-cffi
+  (sbcl-package->cl-source-package sbcl-cffi))
+
 (define-public sbcl-cl-sqlite
   (let ((commit "c738e66d4266ef63a1debc4ef4a1b871a068c112"))
     (package
@@ -3169,6 +3184,9 @@ package.")
 relational database engine.")
       (license license:public-domain))))
 
+(define-public cl-sqlite
+  (sbcl-package->cl-source-package sbcl-cl-sqlite))
+
 (define-public sbcl-parenscript
   (let ((commit "061d8e286c81c3f45c84fb2b11ee7d83f590a8f8"))
     (package
@@ -3543,6 +3561,9 @@ is a library for creating graphical user interfaces.")
        ;; See https://github.com/Ferada/cl-cffi-gtk/issues/24.
        #:tests? #f))))
 
+(define-public cl-cffi-gtk
+  (sbcl-package->cl-source-package sbcl-cl-cffi-gtk))
+
 (define-public sbcl-cl-webkit
   (let ((commit "cd2a9008e0c152e54755e8a7f07b050fe36bab31"))
     (package
@@ -3583,6 +3604,9 @@ browsing capabilities to an application, leveraging the full power of the
 WebKit browsing engine.")
       (license license:expat))))
 
+(define-public cl-webkit
+  (sbcl-package->cl-source-package sbcl-cl-webkit))
+
 (define-public sbcl-lparallel
   (package
     (name "sbcl-lparallel")
@@ -5949,6 +5973,9 @@ and @code{kqueue(2)}), a pathname library and file-system utilities.")
                 "")))))))
     (synopsis "Common Lisp I/O library")))
 
+(define-public cl-iolib
+  (sbcl-package->cl-source-package sbcl-iolib))
+
 (define sbcl-iolib+multiplex
   (package
     (inherit sbcl-iolib)
@@ -6006,6 +6033,9 @@ and @code{kqueue(2)}), a pathname library and file-system utilities.")
 floating point values to IEEE 754 binary representation.")
       (license license:bsd-3))))
 
+(define-public cl-ieee-floats
+  (sbcl-package->cl-source-package sbcl-ieee-floats))
+
 (define sbcl-closure-common
   (let ((commit "e3c5f5f454b72b01b89115e581c3c52a7e201e5c")
         (revision "1"))
@@ -6138,6 +6168,9 @@ offered, one SAX-like, the other similar to StAX.")
                  ((" *\\(\\(:compiled-file \"cxml--system\"\\)\\)")
                   ""))))))))))
 
+(define-public cl-cxml
+  (sbcl-package->cl-source-package sbcl-cxml))
+
 (define-public sbcl-cl-reexport
   (let ((commit "312f3661bbe187b5f28536cd7ec2956e91366c3b")
         (revision "1"))
@@ -6166,6 +6199,9 @@ offered, one SAX-like, the other similar to StAX.")
 cookie headers, cookie creation, cookie jar creation and more.")
       (license license:llgpl))))
 
+(define-public cl-reexport
+  (sbcl-package->cl-source-package sbcl-cl-reexport))
+
 (define-public sbcl-cl-cookie
   (let ((commit "cea55aed8b9ad25fafd13defbcb9fe8f41b29546")
         (revision "1"))
@@ -6201,6 +6237,9 @@ cookie headers, cookie creation, cookie jar creation and more.")
 cookie headers, cookie creation, cookie jar creation and more.")
       (license license:bsd-2))))
 
+(define-public cl-cookie
+  (sbcl-package->cl-source-package sbcl-cl-cookie))
+
 (define-public sbcl-dexador
   (let ((commit "a2714d126cc94bc7a9a6e1e3c08de455b3a66378")
         (revision "1"))
@@ -6243,7 +6282,6 @@ cookie headers, cookie creation, cookie jar creation and more.")
          ("clack" ,sbcl-clack)
          ("babel" ,sbcl-babel)
          ("alexandria" ,sbcl-alexandria)
-         ("quri" ,sbcl-quri)
          ("cl-ppcre" ,sbcl-cl-ppcre)
          ("local-time" ,sbcl-local-time)))
       (arguments
@@ -6258,6 +6296,17 @@ cookie headers, cookie creation, cookie jar creation and more.")
 neat APIs and connection-pooling.  It is meant to supersede Drakma.")
       (license license:expat))))
 
+(define-public cl-dexador
+  (package
+    (inherit (sbcl-package->cl-source-package sbcl-dexador))
+    (arguments
+     `(#:phases
+       ;; asdf-build-system/source has its own phases and does not inherit
+       ;; from asdf-build-system/sbcl phases.
+       (modify-phases %standard-phases/source
+         (add-after 'unpack 'fix-permissions
+           (lambda _ (make-file-writable "t/data/test.gz") #t)))))))
+
 (define-public ecl-dexador
   (sbcl-package->ecl-package sbcl-dexador))
 
@@ -6294,6 +6343,9 @@ more — e.g., class namespace.
 This library offers macros to deal with symbols from any namespace.")
       (license license:llgpl))))
 
+(define-public cl-lisp-namespace
+  (sbcl-package->cl-source-package sbcl-lisp-namespace))
+
 (define-public sbcl-trivial-cltl2
   (let ((commit "8eec8407df833e8f27df8a388bc10913f16d9e83")
         (revision "1"))
@@ -6319,6 +6371,9 @@ Edition\" (@url{https://www.cs.cmu.edu/Groups/AI/html/cltl/clm/node102.html})
 and it exports symbols from implementation-specific packages.")
       (license license:llgpl))))
 
+(define-public cl-trivial-cltl2
+  (sbcl-package->cl-source-package sbcl-trivial-cltl2))
+
 (define-public sbcl-introspect-environment
   (let ((commit "fff42f8f8fd0d99db5ad6c5812e53de7d660020b")
         (revision "1"))
@@ -6360,6 +6415,9 @@ implementations have implementations of the functions that do as much as they
 can and/or provide reasonable defaults.")
       (license license:wtfpl2))))
 
+(define-public cl-introspect-environment
+  (sbcl-package->cl-source-package sbcl-introspect-environment))
+
 (define-public sbcl-type-i
   (let ((commit "dea233f45f94064105ec09f0767de338f67dcbe2")
         (revision "1"))
@@ -6392,6 +6450,9 @@ type the given predicate is trying to check.  This is different from inferring
 the return type of a function.")
       (license license:llgpl))))
 
+(define-public cl-type-i
+  (sbcl-package->cl-source-package sbcl-type-i))
+
 (define-public sbcl-optima
   (let ((commit "373b245b928c1a5cce91a6cb5bfe5dd77eb36195")
         (revision "1"))
@@ -6424,6 +6485,9 @@ the return type of a function.")
 optimizing techniques widely used in the functional programming world.")
       (license license:expat))))
 
+(define-public cl-optima
+  (sbcl-package->cl-source-package sbcl-optima))
+
 (define-public sbcl-fare-quasiquote
   (package
     (name "sbcl-fare-quasiquote")
@@ -6698,6 +6762,9 @@ This system contains the CFFI foreign slot access extension.")))
 with Optima, another pattern matching library for Common Lisp.  It is meant to
 be faster and more extensible than Optima.")))
 
+(define-public cl-trivia
+  (sbcl-package->cl-source-package sbcl-trivia))
+
 (define-public sbcl-mk-string-metrics
   (package
     (name "sbcl-mk-string-metrics")
@@ -6729,6 +6796,9 @@ various string metrics in Common Lisp:
 @end itemize\n")
     (license license:x11)))
 
+(define-public cl-mk-string-metrics
+  (sbcl-package->cl-source-package sbcl-mk-string-metrics))
+
 (define-public sbcl-cl-str
   (let ((commit "3d5ec86e3a0199e5973aacde951086dfd754b5e5"))
     (package
@@ -6764,6 +6834,9 @@ discoverable library instead of many; consistency and composability, where
 arrows.")
       (license license:expat))))
 
+(define-public cl-str
+  (sbcl-package->cl-source-package sbcl-cl-str))
+
 (define-public sbcl-cl-xmlspam
   (let ((commit "ea06abcca2a73a9779bcfb09081e56665f94e22a"))
     (package
-- 
cgit 1.4.1


From 6f11d1b54e97dc142d08ed10c2aa4cace8840af6 Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Fri, 18 Oct 2019 07:46:55 -0400
Subject: gnu: linux-libre@4.4: Update to 4.4.197.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.197.
(linux-libre-4.4-pristine-source): Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index ad3c5972a8..9c2c33a634 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -397,10 +397,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
 
-(define-public linux-libre-4.4-version "4.4.196")
+(define-public linux-libre-4.4-version "4.4.197")
 (define-public linux-libre-4.4-pristine-source
   (let ((version linux-libre-4.4-version)
-        (hash (base32 "0vd7fra22ky4sqp6vamracp5xd4900md5vdx0n4i6dhkf03kz7hn")))
+        (hash (base32 "0ypfl1q1bdbk81hk0bm8a0grqzz4z5rp7z7asa3191ji3r8q9x4w")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.4)))
-- 
cgit 1.4.1


From b84d7ac06e5a7ee50103decb295c64eec97c2c1f Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Fri, 18 Oct 2019 07:48:03 -0400
Subject: gnu: linux-libre@4.9: Update to 4.9.197.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.197.
(linux-libre-4.9-pristine-source): Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 9c2c33a634..49ac7b5316 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -389,10 +389,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
 
-(define-public linux-libre-4.9-version "4.9.196")
+(define-public linux-libre-4.9-version "4.9.197")
 (define-public linux-libre-4.9-pristine-source
   (let ((version linux-libre-4.9-version)
-        (hash (base32 "1vy6j9ycl5aw0dmj4n9kih5i8igybk0ilahlwbn30mlp9aq15az0")))
+        (hash (base32 "032as6g4xvqjarqhvx7mr14yhn6idak4g0ps1skmsl4dfav6hdam")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
-- 
cgit 1.4.1


From e5df2dfce1347349f41554342c65da96e2d2889d Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Fri, 18 Oct 2019 07:48:38 -0400
Subject: gnu: linux-libre@4.14: Update to 4.14.150.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.150.
(linux-libre-4.14-pristine-source): Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 49ac7b5316..6a6c8c0a89 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -381,10 +381,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
 
-(define-public linux-libre-4.14-version "4.14.149")
+(define-public linux-libre-4.14-version "4.14.150")
 (define-public linux-libre-4.14-pristine-source
   (let ((version linux-libre-4.14-version)
-        (hash (base32 "15pjngy3j5vnisv462ll7wsg78qv7q2cz86da0bcwh446v9ap7g6")))
+        (hash (base32 "1c2pxfvv31af0mzcqnbfjk8pc0wrhg4yhspl8a3ab2w5dfwa9ib5")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
-- 
cgit 1.4.1


From b1b721186affb71e81a6e648bb8de9b64cd61221 Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Fri, 18 Oct 2019 07:49:26 -0400
Subject: gnu: linux-libre@4.19: Update to 4.19.80.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.80.
(linux-libre-4.19-pristine-source): Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 6a6c8c0a89..615ab142fa 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -373,10 +373,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.2)))
 
-(define-public linux-libre-4.19-version "4.19.79")
+(define-public linux-libre-4.19-version "4.19.80")
 (define-public linux-libre-4.19-pristine-source
   (let ((version linux-libre-4.19-version)
-        (hash (base32 "0d2bcg0krahia2ylgqaxdppyr9idq2pi6y1si6h8n9sg6rj3a57i")))
+        (hash (base32 "1v776s6q5wxn8ci86dwa8s8y41b94g09fnpgvzysg2h89rvbmac0")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
-- 
cgit 1.4.1


From e02c2f85b36ce1c733bd908a210ce1182bdd2560 Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Fri, 18 Oct 2019 07:50:14 -0400
Subject: gnu: linux-libre: Update to 5.3.7.

* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.7.
(linux-libre-5.3-pristine-source): Update hash.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 615ab142fa..e6e7960410 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -357,10 +357,10 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                         "linux-" version ".tar.xz"))
     (sha256 hash)))
 
-(define-public linux-libre-5.3-version "5.3.6")
+(define-public linux-libre-5.3-version "5.3.7")
 (define-public linux-libre-5.3-pristine-source
   (let ((version linux-libre-5.3-version)
-        (hash (base32 "07zcfpj6ras7mmazny5xjwf8v6l5hwdgnla21sqpppl48ylj2h78")))
+        (hash (base32 "00j8sdrmmppqf38vl50a4zas5gy7yv37n43b61f8472k45773jf6")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.3)))
-- 
cgit 1.4.1


From 4845dee706a1aee89917e5c7f25d3bce64f7e11c Mon Sep 17 00:00:00 2001
From: Mark H Weaver <mhw@netris.org>
Date: Fri, 18 Oct 2019 08:16:58 -0400
Subject: gnu: linux-libre@5.2: Remove.

The 5.2 release series has reached end-of-life,
and is no longer supported upstream.

* gnu/packages/linux.scm (deblob-scripts-5.2, linux-libre-5.2-version)
(linux-libre-5.2-pristine-source, linux-libre-5.2-source)
(linux-libre-headers-5.2, linux-libre-5.2): Remove variables.
---
 gnu/packages/linux.scm | 30 ------------------------------
 1 file changed, 30 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index e6e7960410..0070deeaa6 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -187,12 +187,6 @@ defconfig.  Return the appropriate make target if applicable, otherwise return
    (base32 "15n09zq38d69y1wl28s3nasf3377qp2yil5b887zpqrm00dif7i4")
    (base32 "0nrimraf46nf6y1hwkg29fyl0a83wnj0mwq54ggxvffn9gk5h9pa")))
 
-(define deblob-scripts-5.2
-  (linux-libre-deblob-scripts
-   "5.2.21"
-   (base32 "076fwxlm6jq6z4vg1xq3kr474zz7qk71r90sf9dnfia3rw2pb4fa")
-   (base32 "1vghzpvlsvz5q8baxjza8jdryjmcx61g2pmnm6dd1k7glr6jy1a9")))
-
 (define deblob-scripts-4.19
   (linux-libre-deblob-scripts
    "4.19.79"
@@ -365,14 +359,6 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.3)))
 
-(define-public linux-libre-5.2-version "5.2.21")
-(define-public linux-libre-5.2-pristine-source
-  (let ((version linux-libre-5.2-version)
-        (hash (base32 "0f1mick15d0m7yhhhdwai03wmczvkm9cg38w2ivgmgysfpzy73ls")))
-   (make-linux-libre-source version
-                            (%upstream-linux-source version hash)
-                            deblob-scripts-5.2)))
-
 (define-public linux-libre-4.19-version "4.19.80")
 (define-public linux-libre-4.19-pristine-source
   (let ((version linux-libre-4.19-version)
@@ -439,12 +425,6 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                              %boot-logo-patch
                              %linux-libre-arm-export-__sync_icache_dcache-patch)))
 
-(define-public linux-libre-5.2-source
-  (source-with-patches linux-libre-5.2-pristine-source
-                       (list (search-patch "linux-libre-active-entropy.patch")
-                             %boot-logo-patch
-                             %linux-libre-arm-export-__sync_icache_dcache-patch)))
-
 (define-public linux-libre-4.19-source
   (source-with-patches linux-libre-4.19-pristine-source
                        (list %boot-logo-patch
@@ -539,10 +519,6 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
   (make-linux-libre-headers* linux-libre-5.3-version
                              linux-libre-5.3-source))
 
-(define-public linux-libre-headers-5.2
-  (make-linux-libre-headers* linux-libre-5.2-version
-                             linux-libre-5.2-source))
-
 (define-public linux-libre-headers-4.19
   (make-linux-libre-headers* linux-libre-4.19-version
                              linux-libre-4.19-source))
@@ -804,12 +780,6 @@ It has been modified to remove all non-free binary blobs.")
 (define-public linux-libre-source          linux-libre-5.3-source)
 (define-public linux-libre                 linux-libre-5.3)
 
-(define-public linux-libre-5.2
-  (make-linux-libre* linux-libre-5.2-version
-                     linux-libre-5.2-source
-                     '("x86_64-linux" "i686-linux" "armhf-linux" "aarch64-linux")
-                     #:configuration-file kernel-config))
-
 (define-public linux-libre-4.19
   (make-linux-libre* linux-libre-4.19-version
                      linux-libre-4.19-source
-- 
cgit 1.4.1


From a31b745756669631285da474e838081965c7b892 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Thu, 17 Oct 2019 15:23:39 +0200
Subject: gnu: opensubdiv: Use a regular versioning pattern.

* gnu/packages/graphics.scm (opensubdiv)[version]: Use dots instead of
underscores between numbers.
[source](uri): Adjust accordingly.
---
 gnu/packages/graphics.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index c57d90f5ac..e453d9fa5b 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -1026,12 +1026,13 @@ requirements.")
 (define-public opensubdiv
   (package
     (name "opensubdiv")
-    (version "3_4_0")
+    (version "3.4.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                     (url "https://github.com/PixarAnimationStudios/OpenSubdiv")
-                     (commit (string-append "v" version))))
+                    (url "https://github.com/PixarAnimationStudios/OpenSubdiv")
+                    (commit (string-append "v" (string-join (string-split version #\.)
+                                                            "_")))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-- 
cgit 1.4.1


From 43beec19f4f3e632a10c44127d0ff94b0a1c3214 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 11:49:05 +0200
Subject: gnu: looking-glass-client: Disable CPU-specific optimizations.

* gnu/packages/virtualization.scm (looking-glass-client)[source](modules,
snippet): New fields.
---
 gnu/packages/virtualization.scm | 12 +++++++++++-
 1 file changed, 11 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index fd442bde4b..a3504882a2 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -817,7 +817,17 @@ Machine Protocol.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "02bq46ndmzq9cihazzn7xq1x7q5nzm7iw4l9lqzihxcxp9famkhw"))))
+         "02bq46ndmzq9cihazzn7xq1x7q5nzm7iw4l9lqzihxcxp9famkhw"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           ;; Do not create binaries optimized for the CPU of the build machine,
+           ;; for reproducibility and compatibility.  TODO: in the next version
+           ;; of looking glass, this is exposed as a CMake configure option.
+           (substitute* "client/CMakeLists.txt"
+             (("-march=native")
+              ""))
+           #t))))
      (build-system cmake-build-system)
      (inputs `(("fontconfig" ,fontconfig)
                ("glu" ,glu)
-- 
cgit 1.4.1


From e8d6e36107ddfe98862628204b108bb243073d44 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 11:56:06 +0200
Subject: gnu: libwacom: Update to 1.1.

* gnu/packages/xdisorg.scm (libwacom): Update to 1.1.
---
 gnu/packages/xdisorg.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index 542cb3bb63..f2ead20b2a 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -962,7 +962,7 @@ Escape key when Left Control is pressed and released on its own.")
 (define-public libwacom
   (package
     (name "libwacom")
-    (version "0.33")
+    (version "1.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -970,7 +970,7 @@ Escape key when Left Control is pressed and released on its own.")
                     "libwacom-" version "/libwacom-" version ".tar.bz2"))
               (sha256
                (base32
-                "1wnv34y7m9l6avlvwqvfrnksfnsz1lbgb412dn6s7x1h3wvs7y4l"))))
+                "00lyv419ijyng6ak5vpw0swnn4qg6lbfh7zysf92wcvn6rcq7d4c"))))
     (build-system glib-or-gtk-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-- 
cgit 1.4.1


From 4ad2c9db7da7591da098954cc475818f7eb97c26 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 11:56:25 +0200
Subject: gnu: libwacom: Do not build static libraries.

* gnu/packages/xdisorg.scm (libwacom)[arguments]: New field.
---
 gnu/packages/xdisorg.scm | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index f2ead20b2a..d4312f4635 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -972,6 +972,8 @@ Escape key when Left Control is pressed and released on its own.")
                (base32
                 "00lyv419ijyng6ak5vpw0swnn4qg6lbfh7zysf92wcvn6rcq7d4c"))))
     (build-system glib-or-gtk-build-system)
+    (arguments
+     `(#:configure-flags '("--disable-static")))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
-- 
cgit 1.4.1


From 1df9245586939e5a359f8c486662642d9d5998b5 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 14:18:21 +0200
Subject: gnu: encfs: Fix build failure with GCC 7.

Fixes <https://bugs.gnu.org/37779>.
Reported by Pierre Neidhardt <mail@ambrevar.xyz>.

* gnu/packages/crypto.scm (encfs)[arguments]: Add phase 'patch-CMakeLists.txt'.
---
 gnu/packages/crypto.scm | 9 +++++++++
 1 file changed, 9 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index e8cf8157d5..a8f60f1665 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -211,6 +211,15 @@ OpenBSD tool of the same name.")
              (copy-recursively (assoc-ref inputs "googletest-source")
                                "vendor/github.com/google/googletest")
              #t))
+         (add-before 'configure 'patch-CMakeLists.txt
+           (lambda _
+             ;; Prevent CMake from adding libc on the system include path.
+             ;; Otherwise it will interfere with the libc used by GCC and
+             ;; ultimately cause #include_next errors.
+             (substitute* "CMakeLists.txt"
+               (("include_directories \\(SYSTEM \\$\\{Intl_INCLUDE_DIRS\\}\\)")
+                ""))
+             #t))
          (add-before 'check 'make-unittests
            (lambda _
              (invoke "make" "unittests"))))))
-- 
cgit 1.4.1


From 7349f926c70d92b4ade0da2201d0df797e73fe07 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 14:28:11 +0200
Subject: gnu: ucl: Build with the C90 standard.

Fixes <https://bugs.gnu.org/37778>.
Reported by Pierre Neidhardt <mail@ambrevar.xyz>.

* gnu/packages/compression.scm (ucl)[arguments]: New field.
---
 gnu/packages/compression.scm | 3 +++
 1 file changed, 3 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index c4298c1e95..b63ca4da32 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1901,6 +1901,9 @@ The specification of the Brotli Compressed Data Format is defined in RFC 7932.")
               (base32
                "0j036lkwsxvm15gr29n8wn07cqq79dswjs9k54939ms5zngjjrdq"))))
     (build-system gnu-build-system)
+    (arguments
+     `(;; UCL 1.03 fails to build with newer C standards.
+       #:configure-flags '("CFLAGS=-std=gnu90")))
     (home-page "http://www.oberhumer.com/opensource/ucl/")
     (synopsis "Portable lossless data compression library")
     (description "UCL implements a number of compression algorithms that
-- 
cgit 1.4.1


From 01c8b90b7b76ac183572dd7bac3c25fb53492954 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 14:29:01 +0200
Subject: gnu: ucl: Update home page.

* gnu/packages/compression.scm (ucl)[source, home-page]: Use HTTPS.
---
 gnu/packages/compression.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index b63ca4da32..41301d667c 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1895,7 +1895,7 @@ The specification of the Brotli Compressed Data Format is defined in RFC 7932.")
     (version "1.03")
     (source (origin
              (method url-fetch)
-             (uri (string-append "http://www.oberhumer.com/opensource/"
+             (uri (string-append "https://www.oberhumer.com/opensource/"
                                  name "/download/" name "-" version ".tar.gz"))
              (sha256
               (base32
@@ -1904,7 +1904,7 @@ The specification of the Brotli Compressed Data Format is defined in RFC 7932.")
     (arguments
      `(;; UCL 1.03 fails to build with newer C standards.
        #:configure-flags '("CFLAGS=-std=gnu90")))
-    (home-page "http://www.oberhumer.com/opensource/ucl/")
+    (home-page "https://www.oberhumer.com/opensource/ucl/")
     (synopsis "Portable lossless data compression library")
     (description "UCL implements a number of compression algorithms that
 achieve an excellent compression ratio while allowing fast decompression.
-- 
cgit 1.4.1


From 41c27444637e4bd8817a30e2b933e85abedadcc8 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 14:34:05 +0200
Subject: gnu: ucl: Build shared library instead of static.

* gnu/packages/compression.scm (ucl)[arguments]: Add "--enable-shared" and
"--disable-static" in #:configure-flags.
---
 gnu/packages/compression.scm | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'gnu')

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 41301d667c..ffe9279345 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1903,7 +1903,8 @@ The specification of the Brotli Compressed Data Format is defined in RFC 7932.")
     (build-system gnu-build-system)
     (arguments
      `(;; UCL 1.03 fails to build with newer C standards.
-       #:configure-flags '("CFLAGS=-std=gnu90")))
+       #:configure-flags '("CFLAGS=-std=gnu90"
+                           "--enable-shared" "--disable-static")))
     (home-page "https://www.oberhumer.com/opensource/ucl/")
     (synopsis "Portable lossless data compression library")
     (description "UCL implements a number of compression algorithms that
-- 
cgit 1.4.1


From d8963031afa3044fe5c52d04d174a209ca6bd618 Mon Sep 17 00:00:00 2001
From: Marius Bakke <mbakke@fastmail.com>
Date: Fri, 18 Oct 2019 14:43:27 +0200
Subject: gnu: upx: Fix UCL input.

UCL is a runtime dependency, and thus should not be a native input.

* gnu/packages/compression.scm (upx)[native-inputs]: Move UCL from here ...
[inputs]: ... to here.
---
 gnu/packages/compression.scm | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

(limited to 'gnu')

diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index ffe9279345..6279c929de 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -1928,9 +1928,11 @@ decompression is a little bit slower.")
                "08anybdliqsbsl6x835iwzljahnm9i7v26icdjkcv33xmk6p5vw1"))
              (patches (search-patches "upx-fix-CVE-2017-15056.patch"))))
     (build-system gnu-build-system)
-    (native-inputs `(("perl" ,perl)
-                     ("ucl" ,ucl)))
-    (inputs `(("zlib" ,zlib)))
+    (native-inputs
+     `(("perl" ,perl)))
+    (inputs
+     `(("ucl" ,ucl)
+       ("zlib" ,zlib)))
     (arguments
      `(#:make-flags
        (list "all"
-- 
cgit 1.4.1


From dabcfc6de29032ea52d1cb54163a783f7e480167 Mon Sep 17 00:00:00 2001
From: Tanguy Le Carrour <tanguy@bioneland.org>
Date: Mon, 14 Oct 2019 13:43:20 +0200
Subject: gnu: Add httpie.

* gnu/packages/python-web.scm (httpie): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
---
 gnu/packages/python-web.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

(limited to 'gnu')

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 5c9da7c89d..752d120782 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -30,6 +30,7 @@
 ;;; Copyright © 2019 Vagrant Cascadian <vagrant@debian.org>
 ;;; Copyright © 2019 Brendan Tildesley <mail@brendan.scot>
 ;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com>
+;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -303,6 +304,34 @@ other HTTP libraries.")
 (define-public python2-httplib2
   (package-with-python2 python-httplib2))
 
+(define-public httpie
+  (package
+    (name "httpie")
+    (version "1.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "httpie" version))
+       (sha256
+        (base32
+         "103fcigpxf4nqmrdqjnyz7d9n4n16906slwmmqqc0gkxv8hnw6vd"))))
+    (build-system python-build-system)
+    (arguments
+     ;; The tests attempt to access external web servers, so we cannot run them.
+     '(#:tests? #f))
+    (propagated-inputs
+     `(("python-colorama" ,python-colorama)
+       ("python-pygments" ,python-pygments)
+       ("python-requests" ,python-requests)))
+    (home-page "https://httpie.org/")
+    (synopsis "cURL-like tool for humans")
+    (description
+     "A command line HTTP client with an intuitive UI, JSON support,
+syntax highlighting, wget-like downloads, plugins, and more.  It consists of
+a single http command designed for painless debugging and interaction with
+HTTP servers, RESTful APIs, and web services.")
+    (license license:bsd-3)))
+
 (define-public python-html2text
   (package
     (name "python-html2text")
-- 
cgit 1.4.1