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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages statistics)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gtk)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages maths)
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages readline)
#:use-module (gnu packages texlive)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages base)
#:use-module (gnu packages xorg))
(define-public r
(package
(name "r")
(version "3.2.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
(version-prefix version 1) "/R-"
version ".tar.gz"))
(sha256
(base32
"07a6s865bjnh7w0fqsrkv1pva76w99v86w0w787qpdil87km54cw"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
(list (string-append "LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out")
"/lib/R/lib"))
#:phases
(modify-phases %standard-phases
(add-before
'configure 'set-default-pager
;; Set default pager to "cat", because otherwise it is "false",
;; making "help()" print nothing at all.
(lambda _ (setenv "PAGER" "cat") #t))
(add-before
'check 'set-timezone
;; Some tests require the timezone to be set.
(lambda _ (setenv "TZ" "UTC") #t)))
#:configure-flags
'("--with-blas=openblas"
"--with-lapack"
"--with-cairo"
"--with-libpng"
"--with-jpeglib"
"--with-libtiff"
"--with-ICU"
"--enable-R-shlib"
"--enable-BLAS-shlib"
"--with-system-zlib"
"--with-system-bzlib"
"--with-system-pcre"
"--with-system-tre"
"--with-system-xz")))
(native-inputs
`(("bzip2" ,bzip2)
("perl" ,perl)
("pkg-config" ,pkg-config)
("texlive" ,texlive) ; needed to make vignettes
("texinfo" ,texinfo) ; for building HTML manuals
("which" ,which) ; for tests/Examples/base-Ex.R
("xz" ,xz)))
(inputs
`(("openblas" ,openblas)
("cairo" ,cairo)
("gfortran" ,gfortran)
("icu4c" ,icu4c)
("icedtea6" ,icedtea6 "jdk")
("lapack" ,lapack)
("libjpeg" ,libjpeg)
("libpng" ,libpng)
("libtiff" ,libtiff)
("libxt" ,libxt)
("pcre" ,pcre)
("readline" ,readline)
("zlib" ,zlib)))
(native-search-paths
(list (search-path-specification
(variable "R_LIBS_SITE")
(files (list "site-library/")))))
(home-page "http://www.r-project.org/")
(synopsis "Environment for statistical computing and graphics")
(description
"R is a language and environment for statistical computing and graphics.
It provides a variety of statistical techniques, such as linear and nonlinear
modeling, classical statistical tests, time-series analysis, classification
and clustering. It also provides robust support for producing
publication-quality data plots. A large amount of 3rd-party packages are
available, greatly increasing its breadth and scope.")
(license license:gpl3+)))
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