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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-12-04 12:42:51 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-04 12:42:51 +0100 |
| commit | 18a85213ae19566af5b4422600dd60443415c2c9 (patch) | |
| tree | 205dd9b5b854f7aad5a71149e384c8b048d31fd2 | |
| parent | ce9bfcddb537cb01ee8d27d80452bf928a50e6b6 (diff) | |
| download | guix-18a85213ae19566af5b4422600dd60443415c2c9.tar.gz | |
gnu: pigx-sars-cov2-ww: Update to 0.0.4.
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.4. [inputs]: Add bbmap, bedtools, fastp, ivar, and r-r-utils.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ff7def8a4a..e495b7df3e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11217,7 +11217,7 @@ based methods.") (define-public pigx-sars-cov2-ww (package (name "pigx-sars-cov2-ww") - (version "0.0.3") + (version "0.0.4") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_sarscov2_ww/" @@ -11225,7 +11225,7 @@ based methods.") "/pigx_sars-cov2-ww-" version ".tar.gz")) (sha256 (base32 - "1hhdbwsnl0d37lrmisw5hr630xr8s41qvxflm05anh11rj8n22yw")) + "0axnmz4d8zgir888mc0cilcq4m3v41xmjmpp3w3444lciwnxydvs")) (patches (search-patches "pigx-sars-cov2-ww-no-citeproc.patch")))) (build-system gnu-build-system) (arguments @@ -11239,9 +11239,13 @@ based methods.") ("autoconf" ,autoconf))) (inputs `(("bash-minimal" ,bash-minimal) + ("bbmap" ,bbmap) + ("bedtools" ,bedtools) ("bwa" ,bwa) ("ensembl-vep" ,ensembl-vep) + ("fastp" ,fastp) ("fastqc" ,fastqc) + ("ivar" ,ivar) ("kraken2" ,kraken2) ("krona-tools" ,krona-tools) ("lofreq" ,lofreq) @@ -11257,6 +11261,7 @@ based methods.") ("r-minimal" ,r-minimal) ("r-plotly" ,r-plotly) ("r-qpcr" ,r-qpcr) + ("r-r-utils" ,r-r-utils) ("r-reshape2" ,r-reshape2) ("r-rmarkdown" ,r-rmarkdown) ("r-stringr" ,r-stringr) |