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authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:26:00 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:37:59 +0200
commit8182e6a6fd10bc6e8fb04a4a95df19266aa0b6b2 (patch)
treeb755051103c8e6322faf00ae8c00040fb6eeb2aa /gnu/packages/bioconductor.scm
parentd1ea2b7c8b76dea810102379112b05d344b02530 (diff)
downloadguix-8182e6a6fd10bc6e8fb04a4a95df19266aa0b6b2.tar.gz
gnu: r-organismdbi: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-organismdbi): Move from here...
* gnu/packages/bioconductor.scm (r-organismdbi): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm32
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fea0fe78ac..659c8f5c82 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3145,6 +3145,38 @@ mzIdentML files with the drawback of having less pretty output than a vendor
 specific parser.")
     (license license:gpl2+)))
 
+(define-public r-organismdbi
+  (package
+    (name "r-organismdbi")
+    (version "1.32.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "OrganismDbi" version))
+       (sha256
+        (base32
+         "1mklnzs0d0ygcdibwfnk5xqr8ln6wpa00qcaw9c68m342kql0jqw"))))
+    (properties `((upstream-name . "OrganismDbi")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)
+       ("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-biocmanager" ,r-biocmanager)
+       ("r-dbi" ,r-dbi)
+       ("r-genomicfeatures" ,r-genomicfeatures)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-graph" ,r-graph)
+       ("r-iranges" ,r-iranges)
+       ("r-rbgl" ,r-rbgl)
+       ("r-s4vectors" ,r-s4vectors)))
+    (home-page "https://bioconductor.org/packages/OrganismDbi")
+    (synopsis "Software to enable the smooth interfacing of database packages")
+    (description "The package enables a simple unified interface to several
+annotation packages each of which has its own schema by taking advantage of
+the fact that each of these packages implements a select methods.")
+    (license license:artistic2.0)))
+
 (define-public r-pcamethods
   (package
     (name "r-pcamethods")