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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-23 12:02:44 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-10-27 16:40:18 +0200
commitf1750236c139a5015631db0f4b70a4d8b7d76b5b (patch)
tree844ad260d9437c1bcbb54199ca0b4de9c7e7e5f8 /gnu/packages/bioconductor.scm
parentc0278aa51e08bc5c9916f2b58b7b45676863844f (diff)
downloadguix-f1750236c139a5015631db0f4b70a4d8b7d76b5b.tar.gz
gnu: Add r-asset.
* gnu/packages/bioconductor.scm (r-asset): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 038532c915..a0ecec8498 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2317,6 +2317,33 @@ reproducible gene expression signatures capable of accurately distinguishing
 tumor samples from healthy controls.")
     (license license:artistic2.0)))
 
+(define-public r-asset
+  (package
+    (name "r-asset")
+    (version "2.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASSET" version))
+              (sha256
+               (base32
+                "029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg"))))
+    (properties `((upstream-name . "ASSET")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-mass r-msm r-rmeta))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/ASSET")
+    (synopsis
+     "Subset-based association analysis of heterogeneous traits and subtypes")
+    (description
+     "This package is an R program for the subset-based analysis of
+heterogeneous traits and disease subtypes.  ASSET allows the user to search
+through all possible subsets of z-scores to identify the subset of traits
+giving the best meta-analyzed z-score.  Further, it returns a p-value
+adjusting for the multiple-testing involved in the search.  It also allows for
+searching for the best combination of disease subtypes associated with each
+variant.")
+    (license license:gpl2)))
+
 (define-public r-atena
   (package
     (name "r-atena")