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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-14 22:47:43 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-14 22:47:43 +0100 |
| commit | 1689215a30a24ed9b6eaf7743b0a6b240aefaf4e (patch) | |
| tree | db01d4db9cdf2a359fa4329fdd21a1c6385544a8 /gnu/packages/bioinformatics.scm | |
| parent | 7b8cac86ba0bd7ddf02042ec8b9b46f13687d081 (diff) | |
| download | guix-1689215a30a24ed9b6eaf7743b0a6b240aefaf4e.tar.gz | |
gnu: bedtools-2.18: Use gexp.
* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Use gexp. [native-inputs]: Drop package label.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 39 |
1 files changed, 20 insertions, 19 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fa719e139f..e8da00d805 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -482,26 +482,27 @@ BED, GFF/GTF, VCF.") (base32 "11rvca19ncg03kxd0wzlfx5ws7r3nisd0z8s9j9n182d8ksp2pxz")))) (arguments - '(#:test-target "test" - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'compatibility - (lambda _ - (substitute* "src/utils/fileType/FileRecordTypeChecker.h" - (("static const float PERCENTAGE") - "static constexpr float PERCENTAGE")) - (substitute* "src/utils/general/DualQueue.h" - (("template <class T, template<class T> class CompareFunc>") - "template <class T, template<class U> class CompareFunc>")))) - (delete 'configure) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) - (for-each (lambda (file) - (install-file file bin)) - (find-files "bin" ".*")))))))) + (list + #:test-target "test" + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'compatibility + (lambda _ + (substitute* "src/utils/fileType/FileRecordTypeChecker.h" + (("static const float PERCENTAGE") + "static constexpr float PERCENTAGE")) + (substitute* "src/utils/general/DualQueue.h" + (("template <class T, template<class T> class CompareFunc>") + "template <class T, template<class U> class CompareFunc>")))) + (delete 'configure) + (replace 'install + (lambda _ + (let ((bin (string-append #$output "/bin/"))) + (for-each (lambda (file) + (install-file file bin)) + (find-files "bin" ".*")))))))) (native-inputs - `(("python" ,python-wrapper))) + (list python-wrapper)) (inputs (list samtools zlib)))) |