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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 22:05:43 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 22:06:57 +0100 |
| commit | 29e992c03001ce0c6b4a5ed33d9db7d9593cc23b (patch) | |
| tree | 58d5e343f9357b632eb4b41ae7b755e5e0b0fbad /gnu/packages/cran.scm | |
| parent | fcb122b4ed3f8e7fde815a843338921e5d8302b0 (diff) | |
| download | guix-29e992c03001ce0c6b4a5ed33d9db7d9593cc23b.tar.gz | |
gnu: r-seurat: Fix build.
This is a follow-up to commit e4d4046999304a3693da80cf0fdfe5fd5753b2b7 * gnu/packages/cran.scm (r-seurat)[arguments]: Patch NAMESPACE file.
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3afe67f7cf..5617383cbc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -26491,6 +26491,18 @@ other R users.") "1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) + ;; This is needed because r-spatstat has been split up and there has + ;; been no new release of Seurat since then. + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-spatstat-import + (lambda _ + (substitute* "NAMESPACE" + (("importFrom\\(spatstat,markvario\\)") + "importFrom(spatstat.core,markvario)") + (("importFrom\\(spatstat,ppp\\)") + "importFrom(spatstat.geom,ppp)"))))))) (propagated-inputs `(("r-cluster" ,r-cluster) ("r-cowplot" ,r-cowplot) |