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authorRicardo Wurmus <rekado@elephly.net>2019-12-13 16:47:10 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-12-13 22:41:37 +0100
commit3e33377767b9b2cd3a37724cae364c317698317d (patch)
tree30b530a9a70f3b9df9020768f9d1babfd4c3e596 /gnu/packages/cran.scm
parentae07172c659796f07d9ad878c33be6a7c79ec6ee (diff)
downloadguix-3e33377767b9b2cd3a37724cae364c317698317d.tar.gz
gnu: Add r-abemus.
* gnu/packages/cran.scm (r-abemus): New variable.
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r--gnu/packages/cran.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6432af9392..21a51a6d9f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16350,3 +16350,28 @@ cost-sensitive binary classification.  The bias-correction is an estimate of
 the bias term added to regularized discriminant analysis that minimizes the
 overall risk.")
     (license license:gpl3)))
+
+(define-public r-abemus
+  (package
+    (name "r-abemus")
+    (version "1.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "abemus" version))
+       (sha256
+        (base32
+         "1dhllb184byp1yl15rg2w02zgw3iajag7cxshirg47mnmm7n70bb"))))
+    (properties `((upstream-name . "abemus")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)))
+    (home-page "https://cran.r-project.org/web/packages/abemus/")
+    (synopsis "Adaptive base error model in ultra-deep sequencing data")
+    (description
+     "This package provides an implementation of @dfn{Adaptive Base Error
+Model in Ultra-deep Sequencing data} (ABEMUS), which combines
+platform-specific genetic knowledge and empirical signal to readily detect and
+quantify somatic @dfn{single nucleotide variants} (SNVs) in @dfn{circulating
+cell free DNA} (cfDNA).")
+    (license license:gpl3)))