Merge branch 'master' into mesa-updates

Change-Id: I46ca25bea98d25150877421c6d5161752afabb25

1 files changed, 25 insertions, 23 deletions

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 0c3a560562..c2cf68fca8 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -716,13 +716,13 @@ nonlinear mixed-effects models.")
 (define-public r-mgcv
   (package
    (name "r-mgcv")
-   (version "1.9-0")
+   (version "1.9-1")
    (source
     (origin
      (method url-fetch)
      (uri (cran-uri "mgcv" version))
      (sha256
-      (base32 "0w1v0hdswb332xz3br1fcgacib7ddr4hb96cmlycxcpqq5w01cdj"))))
+      (base32 "0cnvbdda243as2bxfsgnnk7xjmp1msgr9i4vbd84jfnxpqvvq3vh"))))
    (build-system r-build-system)
    (propagated-inputs
     (list r-matrix r-nlme))
@@ -1178,14 +1178,14 @@ solution for sending email, including attachments, from within R.")
 (define-public r-stringi
   (package
     (name "r-stringi")
-    (version "1.8.2")
+    (version "1.8.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "stringi" version))
        (sha256
         (base32
-         "0bd7x9gl0rhpkpdi9j7a449dw2xsgczgbdj600658z5b6wq25l3a"))))
+         "09a964g8q3iphq24ln9c9g5158ynr75pfh3ghddarn0xvn7bw0hn"))))
     (build-system r-build-system)
     (inputs (list icu4c))
     (native-inputs (list pkg-config))
@@ -1408,13 +1408,13 @@ evaluation (NSE) in R.")
 (define-public r-dbi
   (package
     (name "r-dbi")
-    (version "1.1.3")
+    (version "1.2.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "DBI" version))
               (sha256
                (base32
-                "13a2656w5j9shpcwa7gj2szy7nk9sajjhlisi5wdpgd57msk7frq"))))
+                "1g4c2qfyjwbjwbsczhk83xmx74764nn53gnqzb6xxrwqjbxj4dpn"))))
     (build-system r-build-system)
     (native-inputs
      (list r-knitr))
@@ -1560,13 +1560,13 @@ syntax that can be converted to XHTML or other formats.")
 (define-public r-yaml
   (package
     (name "r-yaml")
-    (version "2.3.7")
+    (version "2.3.8")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "yaml" version))
               (sha256
                (base32
-                "1aw0cvaqw8a0d1r3cplj5kiabkcyz8fghcpi0ax8mi7rw0cv436j"))))
+                "1n1zlbnq3ldipnnm08whpvm8r21vxg4c9jzg7x7j3blw2pi7kl4y"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/yaml/")
     (synopsis "Methods to convert R data to YAML and back")
@@ -2738,13 +2738,13 @@ SLURM and Sun Grid Engine.  Multicore and SSH systems are also supported.")
 (define-public r-brew
   (package
     (name "r-brew")
-    (version "1.0-8")
+    (version "1.0-10")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "brew" version))
               (sha256
                (base32
-                "09kq14nbaw0mmpb2vbfklz786q6lyizzkyg5bg64bmj2f1d2sr8i"))))
+                "13x3vnrhfcvr479r4dya61a5vcky2gb4kv2xbivy0ah39qrzg0a1"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/brew")
     (synopsis "Templating framework for report generation")
@@ -3535,14 +3535,14 @@ statements.")
 (define-public r-segmented
   (package
     (name "r-segmented")
-    (version "2.0-0")
+    (version "2.0-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "segmented" version))
        (sha256
         (base32
-         "1j7flzav26ldhg50gzcx8azfh9sx4ay30g75ipq56vqibzc33fwd"))))
+         "0r3l39sihncrmhs6y3nydr6izp5ss86rfwjyhwf2x0clvqq2gkz9"))))
     (build-system r-build-system)
     (propagated-inputs (list r-mass r-nlme))
     (home-page "https://cran.r-project.org/web/packages/segmented")
@@ -4402,13 +4402,13 @@ t-probabilities, quantiles, random deviates and densities.")
 (define-public r-matrixstats
   (package
     (name "r-matrixstats")
-    (version "1.1.0")
+    (version "1.2.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "matrixStats" version))
               (sha256
                (base32
-                "0h85hjvsmc8s3hyjdj83fykb2vl8jc7pb9ynp2xsl0q9v1sihrxl"))))
+                "0ws5lmzqm42vrn5791l21zr05l78x0xi6b89jw0gi0vjb4pc20z4"))))
     (properties `((upstream-name . "matrixStats")))
     (build-system r-build-system)
     (arguments
@@ -5190,13 +5190,13 @@ with alternating row colors) in LaTeX and HTML formats easily from
 (define-public r-vipor
   (package
     (name "r-vipor")
-    (version "0.4.5")
+    (version "0.4.7")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "vipor" version))
               (sha256
                (base32
-                "112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"))))
+                "17hb6y1i9bva0fr4k9m6wncmnzdjad1b7fhsvfhva4xavpll3bds"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/vipor")
     (synopsis "Plot categorical data using noise and density estimates")
@@ -5391,14 +5391,14 @@ Farebrother's algorithm or Liu et al.'s algorithm.")
 (define-public r-cowplot
   (package
     (name "r-cowplot")
-    (version "1.1.1")
+    (version "1.1.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cowplot" version))
        (sha256
         (base32
-         "0j7d5vhzdxn1blrsfafx5z8lhq122rp8230hp9czrpsnnhjydp67"))))
+         "1ppsg3rbqz9a16zq87izdj5w8ylb6jb6v13xb01k7m3n2h4mv4f6"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-ggplot2 r-gtable r-rlang r-scales))
@@ -5779,14 +5779,14 @@ of the points.")
 (define-public r-fpc
   (package
     (name "r-fpc")
-    (version "2.2-10")
+    (version "2.2-11")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "fpc" version))
        (sha256
         (base32
-         "1lj7j74yx747iic1hcngzbym0sqxppja8bxw64m0j6na5s7m9d4r"))))
+         "06j1dzlf96qcaiqg8m5iah9rmwdppky04xjhs8k4rh0k12wr0mc2"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-class
@@ -6448,7 +6448,7 @@ can load multiple parameters to the current environment.")
       (license license:gpl3+))))
 
 (define-public r-tgutil
-  (let ((commit "0e4a2e84e5cf1f74bc66df0a3d8eac89633fd7b1")
+  (let ((commit "db4ff8b98082f8e4dbdeacb452641d215fd3c7ff")
         (revision "1"))
     (package
       (name "r-tgutil")
@@ -6461,7 +6461,7 @@ can load multiple parameters to the current environment.")
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "0pmacpzhrigprlpl8b5j4xz7l110ifw98017xwk569dghbf8zrq1"))))
+          (base32 "00rsqs7f896piywh84jr8fkphbbx4jb7radf6znhhj6fip63yn91"))))
       (properties `((upstream-name . "tgutil")))
       (build-system r-build-system)
       (propagated-inputs (list r-broom
@@ -6481,7 +6481,9 @@ can load multiple parameters to the current environment.")
                                r-tidyr))
       (home-page "https://github.com/tanaylab/tgutil")
       (synopsis "Simple utility functions for Tanay lab code")
-      (description "Shared utility functions for multiple Tanay lab packages.")
+      (description
+       "This package provides simple utility functions that are shared
+across several packages maintained by the Tanay lab.")
       (license license:gpl3))))
 
 (define-public r-catterplots