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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-03-14 15:01:29 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-14 17:58:28 +0100 |
| commit | 204c51cac44809dc352c86bb33332fc75e2b0056 (patch) | |
| tree | 516a119c82988ace9dca2195cb3e310691914c20 /gnu/packages | |
| parent | 4ebc36206bb80cbaa20e76790d93918d1231ae57 (diff) | |
| download | guix-204c51cac44809dc352c86bb33332fc75e2b0056.tar.gz | |
gnu: Add r-premessa.
* gnu/packages/bioinformatics.scm (r-premessa): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 56 |
1 files changed, 56 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4de546e1f8..a9c62ab8b1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8940,6 +8940,62 @@ target genes, Pando simultaneously infers gene modules and sets of regulatory regions for each transcription factor.") (license license:expat))) +(define-public r-premessa + (let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85") + (revision "1")) + (package + (name "r-premessa") + (version (git-version "0.3.4" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ParkerICI/premessa") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb")) + (snippet + '(delete-file "inst/normalizer_shinyGUI/www/d3.min.js")))) + (properties `((upstream-name . "premessa"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/normalizer_shinyGUI/www/" + (invoke "esbuild" (assoc-ref inputs "d3.v4.js") + "--minify" "--outfile=d3.min.js"))))))) + (propagated-inputs + (list r-data-table + r-flowcore + r-ggplot2 + r-gridextra + r-hexbin + r-jsonlite + r-reshape + r-rhandsontable + r-shiny + r-shinyjqui)) + (native-inputs + `(("esbuild" ,esbuild) + ("d3.v4.js" + ,(origin + (method url-fetch) + (uri "https://d3js.org/d3.v4.js") + (sha256 + (base32 + "0y7byf6kcinfz9ac59jxc4v6kppdazmnyqfav0dm4h550fzfqqlg")))))) + (home-page "https://github.com/ParkerICI/premessa") + (synopsis "Pre-processing of flow and mass cytometry data") + (description + "This is an R package for pre-processing of flow and mass cytometry +data. This package includes panel editing or renaming for FCS files, +bead-based normalization and debarcoding.") + (license license:gpl3)))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0")) |