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author | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 12:15:18 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 12:15:18 +0100 |
commit | 3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2 (patch) | |
tree | 9bfac3b6f4cf51a8d1f4834aee653d0514bd4d9e /gnu/packages | |
parent | 1daedaa8646696783c88553e03035d547fd001ca (diff) | |
download | guix-3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2.tar.gz |
gnu: r-gkmsvm: Move back to (gnu packages cran).
* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here... * gnu/packages/cran.scm (r-gkmsvm): ...to here.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 27 | ||||
-rw-r--r-- | gnu/packages/cran.scm | 26 |
2 files changed, 26 insertions, 27 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 526c2eecbb..4f8e0562b1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4042,33 +4042,6 @@ visualising metrics relative to experiment run time or spatially over the surface of a flowcell.") (license license:expat))) -;; This is a CRAN package, but it depends on packages from Bioconductor. -(define-public r-gkmsvm - (package - (name "r-gkmsvm") - (version "0.81.0") - (source - (origin - (method url-fetch) - (uri (cran-uri "gkmSVM" version)) - (sha256 - (base32 - "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj")))) - (properties `((upstream-name . "gkmSVM"))) - (build-system r-build-system) - (propagated-inputs - `(("r-kernlab" ,r-kernlab) - ("r-rcpp" ,r-rcpp) - ("r-rocr" ,r-rocr) - ("r-seqinr" ,r-seqinr))) - (home-page "https://cran.r-project.org/web/packages/gkmSVM") - (synopsis "Gapped-kmer support vector machine") - (description - "This R package provides tools for training gapped-kmer SVM classifiers -for DNA and protein sequences. This package supports several sequence -kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") - (license license:gpl2+))) - ;; This is a CRAN package, but it depends on multtest from Bioconductor. (define-public r-mutoss (package diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5854ff6031..30c346d0c1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -16471,6 +16471,32 @@ visualizations and provides the same flexible approach to building up plots layer by layer.") (license license:gpl3))) +(define-public r-gkmsvm + (package + (name "r-gkmsvm") + (version "0.81.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "gkmSVM" version)) + (sha256 + (base32 + "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj")))) + (properties `((upstream-name . "gkmSVM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-kernlab" ,r-kernlab) + ("r-rcpp" ,r-rcpp) + ("r-rocr" ,r-rocr) + ("r-seqinr" ,r-seqinr))) + (home-page "https://cran.r-project.org/web/packages/gkmSVM") + (synopsis "Gapped-kmer support vector machine") + (description + "This R package provides tools for training gapped-kmer SVM classifiers +for DNA and protein sequences. This package supports several sequence +kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") + (license license:gpl2+))) + (define-public r-varselrf (package (name "r-varselrf") |