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| author | Marcel Schilling <marcel.schilling@uni-luebeck.de> | 2021-12-13 09:49:23 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-12-13 09:50:58 +0100 |
| commit | 531a69ecb6ac85d03230d242b739c9671c984d0a (patch) | |
| tree | 6eea93e842081dc9fefa425197b9fb9461f1ef9e /gnu | |
| parent | efd4d36a283acf5441159d4babf25d2054776579 (diff) | |
| download | guix-531a69ecb6ac85d03230d242b739c9671c984d0a.tar.gz | |
gnu: Add r-dearseq.
* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a25f56ad02..ee3ce80f9c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1518,6 +1518,36 @@ data. In addition, provides numerous plotting functions for commonly used visualizations.") (license license:artistic2.0))) +(define-public r-dearseq + (package + (name "r-dearseq") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "dearseq" version)) + (sha256 + (base32 + "07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-kernsmooth" ,r-kernsmooth) + ("r-matrixstats" ,r-matrixstats) + ("r-patchwork" ,r-patchwork) + ("r-pbapply" ,r-pbapply) + ("r-statmod" ,r-statmod) + ("r-survey" ,r-survey) + ("r-viridislite" ,r-kernsmooth))) + (home-page "https://github.com/borishejblum/dearseq") + (synopsis "DEA for RNA-seq data through a robust variance component test") + (description + "This is a package for Differential Expression Analysis of RNA-seq data. +It features a variance component score test accounting for data +heteroscedasticity through precision weights. Perform both gene-wise and gene +set analyses, and can deal with repeated or longitudinal data.") + (license license:gpl2))) + (define-public r-decipher (package (name "r-decipher") |