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| author | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-04-29 23:33:43 -0400 |
|---|---|---|
| committer | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-05-31 14:53:34 -0400 |
| commit | 955e7d628d6759e8be0d5fb2d8ca9ab4c99a54bf (patch) | |
| tree | 3fa6bb6627f88abaab0d3db673cbd1fe353f243b /gnu | |
| parent | a5e29cd838f8c4e0cbe8de79a5205def563ef579 (diff) | |
| download | guix-955e7d628d6759e8be0d5fb2d8ca9ab4c99a54bf.tar.gz | |
gnu: Remove find-circ.
* gnu/packages/bioinformatics.scm (find-circ): Delete variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 50 |
1 files changed, 0 insertions, 50 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 32a9a8d526..e8823fed7a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11677,56 +11677,6 @@ conversions, region filtering, FASTA sequence extraction and more.") (license (list license:expat license:artistic2.0))))) -(define-public find-circ - ;; The last release was in 2015. The license was clarified in 2017, so we - ;; take the latest commit. - (let ((commit "8655dca54970fcf7e92e22fbf57e1188724dda7d") - (revision "1")) - (package - (name "find-circ") - (version (git-version "1.2" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/marvin-jens/find_circ") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0p77pbqbclqr4srms34y1b9b4njybfpjiknc11ki84f3p8skb3cg")))) - (build-system gnu-build-system) - (arguments - `(#:tests? #f ; there are none - #:phases - ;; There is no actual build system. - (modify-phases %standard-phases - (delete 'configure) - (delete 'build) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (path (getenv "GUIX_PYTHONPATH"))) - (for-each (lambda (script) - (install-file script bin) - (wrap-program (string-append bin "/" script) - `("GUIX_PYTHONPATH" ":" prefix (,path)))) - '("cmp_bed.py" - "find_circ.py" - "maxlength.py" - "merge_bed.py" - "unmapped2anchors.py"))) - #t))))) - (inputs - (list python-2 python2-pysam python2-numpy)) - (home-page "https://github.com/marvin-jens/find_circ") - (synopsis "circRNA detection from RNA-seq reads") - (description "This package provides tools to detect head-to-tail -spliced (back-spliced) sequencing reads, indicative of circular RNA (circRNA) -in RNA-seq data.") - (license license:gpl3)))) - (define-public fit-sne (package (name "fit-sne") |