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authorRicardo Wurmus <rekado@elephly.net>2017-05-17 16:36:35 +0200
committerRicardo Wurmus <rekado@elephly.net>2017-05-22 18:54:58 +0200
commitd4b83651d1331ebe5327d0d448567f3084bdd8b5 (patch)
tree1d244c3d1f7d6e4095a881f24f74c93fae8aa29d /gnu
parentfd3782d13b8f2e835e9867c7abd92786a93e8ad6 (diff)
downloadguix-d4b83651d1331ebe5327d0d448567f3084bdd8b5.tar.gz
gnu: Add r-aroma-light.
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9b4afbfcfb..a372b163cf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8994,6 +8994,33 @@ algorithms; density clustering, hierarchical clustering, k-means, and the
 discovery of differentially expressed genes and markers.")
       (license license:gpl3))))
 
+(define-public r-aroma-light
+  (package
+    (name "r-aroma-light")
+    (version "3.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "aroma.light" version))
+       (sha256
+        (base32
+         "10snykmmx36qaymyf5s1n1km8hsscyzpykcpf0mzsrcv8ml9rp8a"))))
+    (properties `((upstream-name . "aroma.light")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-matrixstats" ,r-matrixstats)
+       ("r-r-methodss3" ,r-r-methodss3)
+       ("r-r-oo" ,r-r-oo)
+       ("r-r-utils" ,r-r-utils)))
+    (home-page "https://github.com/HenrikBengtsson/aroma.light")
+    (synopsis "Methods for normalization and visualization of microarray data")
+    (description
+     "This package provides methods for microarray analysis that take basic
+data types such as matrices and lists of vectors.  These methods can be used
+standalone, be utilized in other packages, or be wrapped up in higher-level
+classes.")
+    (license license:gpl2+)))
+
 (define htslib-for-sambamba
   (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
     (package