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| author | Lars-Dominik Braun <lars@6xq.net> | 2021-07-20 14:19:52 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2021-07-21 13:36:08 +0200 |
| commit | ed636babfaf335989b169ad3768f510310680ca5 (patch) | |
| tree | 3d451ee30cb5369a356c0aedd76b413ab92a56b1 /gnu | |
| parent | 690df95d1aafa40143d0fe9989021af22e845029 (diff) | |
| download | guix-ed636babfaf335989b169ad3768f510310680ca5.tar.gz | |
gnu: Add r-ascat.
* gnu/packages/bioinformatics.scm (r-ascat): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7dcc6da1cb..fbb777400c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14660,3 +14660,32 @@ structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers.") (license license:expat))) + +(define-public r-ascat + (package + (name "r-ascat") + (version "2.5.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Crick-CancerGenomics/ascat.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0cc0y3as6cb64iwnx0pgbajiig7m4z723mns9d5i4j09ccid3ccm")))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'move-to-ascat-dir + (lambda _ + (chdir "ASCAT")))))) + (propagated-inputs + `(("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "https://github.com/VanLoo-lab/ascat/") + (synopsis "Allele-Specific Copy Number Analysis of Tumors in R") + (description "This package provides the @acronym{ASCAT,Allele-Specific Copy +Number Analysis of Tumors} R package that can be used to infer tumour purity, +ploidy and allele-specific copy number profiles.") + (license license:gpl3))) |