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| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 74071900a3..8b4f88e708 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1754,6 +1754,38 @@ LC-MSMS and MRM files from proteomics experiments; and PSI mzIdentML example files for various search engines.") (license license:gpl2+))) +(define-public r-msigdb + (package + (name "r-msigdb") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "msigdb" version + 'experiment)) + (sha256 + (base32 + "1kgsqg1d5r852qas09g6fs0pcmk6jgbb6g983v6iqw19qsiy6jby")))) + (properties `((upstream-name . "msigdb"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi + r-annotationhub + r-experimenthub + r-gseabase + r-org-hs-eg-db + r-org-mm-eg-db)) + (native-inputs (list r-knitr)) + (home-page "https://doi.org/doi:10.18129/B9.bioc.msigdb") + (synopsis "ExperimentHub package for the molecular signatures database") + (description + "R-msigdb provides the Molecular Signatures Database in a R accessible +objects. Signatures are stored in @code{GeneSet} class objects form the +GSEABase package and the entire database is stored in a +@code{GeneSetCollection} object. These data are then hosted on the +@code{ExperimentHub}. Data used in this package was obtained from the +@code{MSigDB} of the Broad Institute. Metadata for each gene set is stored +along with the gene set in the @code{GeneSet} class object.") + (license license:cc-by4.0))) + (define-public r-pasilla (package (name "r-pasilla") |