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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8698bf7563..b3b10af193 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4597,6 +4597,48 @@ data. EpiScanpy is the epigenomic extension of the very popular scRNA-seq analysis tool Scanpy (Genome Biology, 2018).") (license license:bsd-3))) +(define-public python-ete3 + (package + (name "python-ete3") + (version "3.1.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/etetoolkit/ete") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1i6533wsm06mz0sdrisqai929j744cnczwjgsmxl847q5k16kngd")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + '(list "-k" + ;; This test crashes Python in the build container + (string-append "not test_renderer" + ;; These all need internet access + " and not test_00_update_database" + " and not test_01tree_annotation" + " and not test_get_topology" + " and not test_merged_id" + " and not test_ncbi_compare" + " and not test_ncbiquery") + "ete3/test/test_api.py"))) + (propagated-inputs + (list python-lxml + python-numpy + python-pyqt + python-scipy)) + (native-inputs + (list python-pytest)) + (home-page "http://etetoolkit.org") + (synopsis "Python environment for phylogenetic tree exploration") + (description + "This package provides a Python environment for phylogenetic tree +exploration.") + (license license:gpl3+))) + (define-public exonerate (package (name "exonerate") |