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| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b323541f82..65df5d1f11 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14585,6 +14585,44 @@ data manipulation and visualization.") objects from the @code{graph} package.") (license license:epl1.0))) +(define-public r-fishpond + (package + (name "r-fishpond") + (version "2.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "fishpond" version)) + (sha256 + (base32 + "0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym")))) + (properties `((upstream-name . "fishpond"))) + (build-system r-build-system) + (inputs (list zlib)) + (propagated-inputs + (list r-abind + r-genomicranges + r-gtools + r-iranges + r-jsonlite + r-matrix + r-matrixstats + r-qvalue + r-rcpp + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment + r-svmisc)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mikelove/fishpond") + (synopsis "Downstream methods and tools for expression data") + (description + "The @code{fishpond} package contains methods for differential transcript +and gene expression analysis of RNA-seq data using inferential replicates for +uncertainty of abundance quantification, as generated by Gibbs sampling or +bootstrap sampling. Also the package contains a number of utilities for +working with Salmon and Alevin quantification files.") + (license license:gpl2))) + (define-public r-fithic (package (name "r-fithic") |