diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 211 |
1 files changed, 121 insertions, 90 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index da15283ef3..9b842621ee 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -157,8 +157,8 @@ randomly altered. (license license:gpl3))) (define-public aocommon - (let ((commit "7329a075271edab8f6264db649e81e62b2b6ae5e") - (revision "1")) + (let ((commit "9272ea36693a7ce7aa3524a9e212a60a509c3b8a") + (revision "2")) (package (name "aocommon") (version (git-version "0.0.0" revision commit)) @@ -169,7 +169,7 @@ randomly altered. (url "https://gitlab.com/aroffringa/aocommon") (commit commit))) (sha256 - (base32 "0qcfax6pbzs0yigy0x8xibrkk539wm2pbvjsb4lh50fybir02nix")) + (base32 "0klcrrlkc4sjpr83m2gnwb65lg798rydyvrlpangf7np1qg4zbk5")) (file-name (git-file-name name version)))) (build-system copy-build-system) (arguments @@ -186,7 +186,7 @@ reused in several astronomical applications, such as @code{wsclean}, (define-public calceph (package (name "calceph") - (version "3.5.3") + (version "3.5.4") (source (origin (method url-fetch) @@ -194,7 +194,7 @@ reused in several astronomical applications, such as @code{wsclean}, "https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-" version ".tar.gz")) (sha256 - (base32 "12apl806h8qx1kq74malq3828jqapwfi27cn05pvvxfiq7gfpllx")))) + (base32 "1d95k62926p6h43qh9pxbpa5wm8rby5la9pqq3k6sdyg4gl39a69")))) (build-system gnu-build-system) (native-inputs (list gfortran)) @@ -278,7 +278,7 @@ rendering of the atmosphere model and examine its properties. (define-public aoflagger (package (name "aoflagger") - (version "3.2.0") + (version "3.4.0") (source (origin (method git-fetch) @@ -286,16 +286,15 @@ rendering of the atmosphere model and examine its properties. (url "https://gitlab.com/aroffringa/aoflagger") (commit (string-append "v" version)))) (sha256 - (base32 "1dcbfrbiybhpbypna2xhddx1wk7yifh38ha2r6p5rzsikzwlsin1")) + (base32 "0dxmcy04cayhs4s2z41wls1dnmg9hkffvlqcmc660idqziffvv1g")) (patches (search-patches "aoflagger-use-system-provided-pybind11.patch")) (file-name (git-file-name name version)))) (build-system cmake-build-system) (arguments (list - ;; XXX: Tests require external files download from + ;; Tests require external files download from ;; https://www.astron.nl/citt/ci_data/aoflagger/ - ;; FIXME: runtest is not found #:tests? #f #:configure-flags #~(list (string-append "-DCASACORE_ROOT_DIR=" @@ -452,7 +451,7 @@ with namespaces, exception handling, and member template functions.") (define-public cfitsio (package (name "cfitsio") - (version "4.2.0") + (version "4.3.1") (source (origin (method url-fetch) @@ -460,7 +459,7 @@ with namespaces, exception handling, and member template functions.") "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/" "cfitsio-" version ".tar.gz")) (sha256 - (base32 "128qsv2q0f0g714ahlsixiikvvbwxi9bg9q9pcr5cd3f7wdkv9gb")))) + (base32 "1gk2a07ypmc8rcngakcarprznq7hi3xr9szfv3hy2yv80ppci9s7")))) (build-system gnu-build-system) (arguments (list @@ -758,14 +757,14 @@ corrections.") (define-public wcslib (package (name "wcslib") - (version "8.1") + (version "8.2.2") (source (origin (method url-fetch) (uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/" "wcslib-" version ".tar.bz2")) (sha256 - (base32 "17hjnkwn2rd5d9krw2n637q4y8ma4nzk2i55zzn8l2yimdpkxwib")) + (base32 "0cvqppjf7gk0f3rs9cc46h5fffv2l8ylrb234r9fbx0px0525632")) (snippet #~(begin (use-modules (guix build utils)) (delete-file-recursively "C/flexed"))))) @@ -970,7 +969,7 @@ programs for the manipulation and analysis of astronomical data.") (define-public phd2 (package (name "phd2") - (version "2.6.11") + (version "2.6.12") (source (origin (method git-fetch) @@ -979,7 +978,7 @@ programs for the manipulation and analysis of astronomical data.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0n87xsv9gzrwk1ygws4vw397ffq40xybp5b3c3bd5kcmff0avaw9")) + (base32 "16695vyczl861fz5qinp23wqn6hzv5h1aspz9x21x67w0a3smbmy")) (modules '((guix build utils) (ice-9 ftw) (srfi srfi-26))) @@ -1121,7 +1120,7 @@ image formats.") (define-public splash (package (name "splash") - (version "3.9.0") + (version "3.10.1") (source (origin (method git-fetch) (uri (git-reference @@ -1129,7 +1128,7 @@ image formats.") (commit (string-append "v" version)))) (sha256 (base32 - "19r5j4jrxhp3gf865ns59vvfnn5a303dqgmb8y2kgcsx26fci1hs")) + "1cyg7my2lbpai81nfnlj0r7pvral3kjn31dcq2p4982d2xg0dj87")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (arguments @@ -1572,13 +1571,13 @@ astronomy and astrophysics.") (define-public python-astropy-healpix (package (name "python-astropy-healpix") - (version "1.0.0") + (version "1.0.2") (source (origin (method url-fetch) (uri (pypi-uri "astropy_healpix" version)) (sha256 - (base32 "18zfmdv0vs0yawirq8c2mpjxx7bvy66z0rlcyc1n6s0fl5ifz0pl")))) + (base32 "0fij80ws16xzbph8z9v27w54dnc3vry8fk9p3mvxrglnjgnscvq5")))) (build-system pyproject-build-system) (arguments (list @@ -1847,13 +1846,13 @@ attempting to maintain ISTP compliance (define-public python-crds (package (name "python-crds") - (version "11.17.9") + (version "11.17.13") (source (origin (method url-fetch) (uri (pypi-uri "crds" version)) (sha256 (base32 - "0ha7ibs5lmqs9pcr546jyxzgrmx1xyqps7fsp220rvlsbsisdgm0")))) + "0jcvyiq3z2kbd8g33gk5r99rvhn9i50lz7ngqibdafh390dz5zhc")))) (build-system pyproject-build-system) (arguments (list @@ -1929,13 +1928,13 @@ Cesium.") (define-public python-drms (package (name "python-drms") - (version "0.6.4") + (version "0.7.0") (source (origin (method url-fetch) (uri (pypi-uri "drms" version)) (sha256 - (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw")))) + (base32 "0smc39nndxqbznjcpnylsag1sc2ksfjhxh4dwiqbki8q6v5ahx84")))) (build-system pyproject-build-system) (native-inputs (list python-astropy @@ -1955,7 +1954,7 @@ used with local NetDRMS sites.") (define-public python-drizzle (package (name "python-drizzle") - (version "1.14.3") + (version "1.14.4") (source (origin (method git-fetch) ;PyPi doesn't have the test data sets @@ -1964,7 +1963,7 @@ used with local NetDRMS sites.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "04gncwg76yivcaq7rwgsw5k8w4h3c4wcrjcamb53h0d5s820z7dl")))) + (base32 "01zsq1r3p9lig0aik01szncd7nbmyi561mhi1n44yjhh7d86fp8y")))) (build-system pyproject-build-system) (arguments (list @@ -2041,13 +2040,13 @@ of dates.") (define-public python-mpl-animators (package (name "python-mpl-animators") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (pypi-uri "mpl_animators" version)) (sha256 - (base32 "12kjmj7rn3pk9ly82h5s5hn0kl3kxkr7bgkz9zr9k59pir8z1r8b")))) + (base32 "078dshs383ny182dac0spg7z0iilcwa0fnwv1vizsr6p1d3ar98b")))) (build-system pyproject-build-system) (native-inputs (list python-pytest @@ -2067,13 +2066,13 @@ the easy construction of interactive matplotlib widget based animations.") (define-public python-photutils (package (name "python-photutils") - (version "1.9.0") + (version "1.10.0") (source (origin (method url-fetch) (uri (pypi-uri "photutils" version)) (sha256 - (base32 "0gjvrmcb10lyqx3h9521zqskqngd5xcp3l9h2b02mk1p7q54mzdy")))) + (base32 "148zhdxhlcgj6dxyzaz78bzxw1q44qa9q9sfdqbfbla0s0w2jaay")))) (build-system pyproject-build-system) (arguments (list @@ -2092,11 +2091,22 @@ the easy construction of interactive matplotlib widget based animations.") (make-file-writable "photutils/_compiler.c") (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs - (list python-astropy python-numpy)) + (list python-astropy + python-bottleneck + python-gwcs + python-matplotlib + python-numpy + python-rasterio + python-scikit-image + python-scikit-learn + python-scipy + python-shapely + python-tqdm)) (native-inputs (list python-cython python-extension-helpers python-pytest-astropy + python-semantic-version python-setuptools-scm)) (home-page "https://github.com/astropy/photutils") (synopsis "Source detection and photometry") @@ -2266,30 +2276,34 @@ Virtual observatory (VO) using Python.") (define-public python-regions (package (name "python-regions") - (version "0.7") + (version "0.8") (source (origin (method url-fetch) (uri (pypi-uri "regions" version)) (sha256 - (base32 "08wsg9kxnki5pz8gdp81bq06jdmsip382fl02rvnr96cvzr7wf3m")))) - (build-system python-build-system) + (base32 "09401pz7926zlci7cznd78hmv9947f6jxyy2afqdqc1xaccpzcq2")))) + (build-system pyproject-build-system) (arguments - `(#:test-target "pytest" - #:phases - (modify-phases %standard-phases - ;; This doctest requires online data. - (add-after 'unpack 'delete-doctest - (lambda _ (delete-file "docs/masks.rst"))) - ;; This file is opened in both install and check phases. - (add-before 'install 'writable-compiler - (lambda _ (make-file-writable "regions/_compiler.c"))) - (add-before 'check 'writable-compiler - (lambda _ (make-file-writable "regions/_compiler.c"))) - (add-before 'check 'writable-home - (lambda _ (setenv "HOME" (getcwd))))))) + (list + #:phases + #~(modify-phases %standard-phases + ;; This file is opened in both install and check phases. + ;; XXX: Check if it is still required. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "regions/_compiler.c"))) + (add-before 'check 'prepare-test-environment + (lambda _ + (setenv "HOME" "/tmp") + (make-file-writable "regions/_compiler.c") + (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs - (list python-astropy python-numpy)) + (list python-astropy + python-h5py + python-matplotlib + python-numpy + python-scipy + python-shapely)) (native-inputs (list python-cython python-extension-helpers @@ -2305,13 +2319,13 @@ Virtual observatory (VO) using Python.") (define-public python-reproject (package (name "python-reproject") - (version "0.12.0") + (version "0.13.0") (source (origin (method url-fetch) (uri (pypi-uri "reproject" version)) (sha256 - (base32 "1cjdfv7wd4c0ia63vqakxf9w8hd5dfz6jzi520scd37rliy1xgld")))) + (base32 "1qkjbx8xsawhi1gjzqimais3crvkwgbzy1pr51x6anjjln88rgll")))) (build-system pyproject-build-system) (arguments (list @@ -2533,13 +2547,13 @@ elevation, solar azimuth, rahukaalam, and the phases of the moon.") (define-public python-spectral-cube (package (name "python-spectral-cube") - (version "0.6.3") + (version "0.6.5") (source (origin (method url-fetch) (uri (pypi-uri "spectral-cube" version)) (sha256 - (base32 "10q76rsgf9w4j7y68mfa870bpxf06m6kqvivj4340jmgnsrfy1zg")))) + (base32 "0cqxgmk46gv2qa2kls8fph105lgwbwf13hvizh6w85mzgypyp740")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy @@ -2587,9 +2601,7 @@ of axis order, spatial projections, and spectral units that exist in the wild. (define-public python-spherical-geometry (package (name "python-spherical-geometry") - ;; XXX: Can't be updated to the latest see: - ;; https://github.com/spacetelescope/spherical_geometry/issues/227 - (version "1.2.22") + (version "1.3.1") (source (origin (method git-fetch) @@ -2598,7 +2610,7 @@ of axis order, spatial projections, and spectral units that exist in the wild. (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0kzcncqir4v7nhk9lxj9gxr32p3krkaqa58y2i4kksgxxy24qw4z")))) + (base32 "172f81h42jq6mv3gpx497z2nkhkx11w4pzmcqljcicri2zqj1m6g")))) (build-system pyproject-build-system) (arguments (list @@ -2612,18 +2624,23 @@ of axis order, spatial projections, and spectral units that exist in the wild. (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version) ;; Use our own libraries in place of bundles. (setenv "USE_SYSTEM_QD" "1"))) - (add-before 'check 'build-extensions + (add-before 'check 'prepare-test-environment (lambda _ - (invoke "python" "setup.py" "build_ext" "--inplace")))))) + (invoke "python" "setup.py" "build_ext" "--inplace") + (call-with-output-file "pytest.ini" + (lambda (port) + (format port "[pytest] +python_files = test_*.py")))))))) (native-inputs (list python-pytest + python-pytest-astropy-header python-setuptools-scm)) (inputs (list qd)) (propagated-inputs (list python-astropy python-numpy)) - (home-page "https://github.com/spacetelescope/tweakwcs") + (home-page "https://github.com/spacetelescope/spherical_geometry") (synopsis "Python astronimical package for handling spherical polygons") (description "The @code{spherical_geometry} library is a Python package for handling @@ -2663,18 +2680,24 @@ Science Institute} image array manipulation functions.") (define-public python-stsci-imagestats (package (name "python-stsci-imagestats") - (version "1.6.3") + (version "1.8.0") (source (origin (method url-fetch) (uri (pypi-uri "stsci.imagestats" version)) (sha256 (base32 - "14457izlbnks84dyza75ib3nvx2w8nhlqm9vc1zb7hbhknb5gjvw")))) + "01jqqrhcna0ghin48bbcza57d12371ny4l4pqws89irwdhd8xr0r")))) (build-system pyproject-build-system) (arguments - (list #:tests? #f)) ;No tests + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'build-extensions + (lambda _ + ;; Cython extensions have to be built before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace")))))) (propagated-inputs (list python-numpy)) - (native-inputs (list python-setuptools-scm)) + (native-inputs (list python-pytest python-setuptools-scm)) (home-page "https://stsciimagestats.readthedocs.io/en/latest/") (synopsis "Compute sigma-clipped statistics on data arrays") (description @@ -2764,13 +2787,13 @@ image processing functions: @code{xyxymatch}, @code{geomap}.") (define-public python-stdatamodels (package (name "python-stdatamodels") - (version "1.8.3") + (version "1.9.0") (source (origin (method url-fetch) (uri (pypi-uri "stdatamodels" version)) (sha256 - (base32 "0265xa9nrp6qp1z7v9kmnd3c8jc0dad2vzin657clk3rrsj2qll5")))) + (base32 "16hwhvd8bqm1cmkgcn1v43hp2cvf094fz954rxb6jv2xx6csic15")))) (build-system pyproject-build-system) (arguments (list @@ -2834,13 +2857,13 @@ implementing calibration pipeline software.") (define-public python-stsynphot (package (name "python-stsynphot") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (pypi-uri "stsynphot" version)) (sha256 (base32 - "0qkdh47j84v7fzri7bmi1jcmggdqq0a8byamfm73d8mbz86v8sn4")))) + "15m3vy39mc7rh1mrxs8d2bs0bx5vv632m6wg8n15fqjzhadqy7j5")))) (build-system pyproject-build-system) (arguments (list @@ -2984,7 +3007,7 @@ low quality ones") (define-public libpasastro (package (name "libpasastro") - (version "1.4.1") + (version "1.4.2") (source (origin (method git-fetch) @@ -2993,7 +3016,7 @@ low quality ones") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1h92p9ph3zi4w8krny1azd9wgwna2nf07ims983jcky1chkfm0is")))) + (base32 "1na3gyb3nzb5gdgccs1653j2gnz6w3v1mqzhyhkx3yqw8bs3q5x0")))) (build-system gnu-build-system) (arguments `(#:tests? #f @@ -3394,13 +3417,13 @@ Moon position, etc.") (define-public python-jplephem (package (name "python-jplephem") - (version "2.20") + (version "2.21") (source (origin (method url-fetch) (uri (pypi-uri "jplephem" version)) (sha256 - (base32 "1yp1l3n07849411099f976ps0pyv8jk8k5l9da9nhv54ir86v65v")))) + (base32 "0mcdhb22vwbyavcnkcwchj0cxnxsvaw5563v464ipwlm0rhln69l")))) (build-system pyproject-build-system) (arguments (list @@ -3538,7 +3561,7 @@ functions, so that they can be called with scalar or array inputs.") (define-public python-pynbody (package (name "python-pynbody") - (version "1.4.2") + (version "1.5.2") (source (origin (method git-fetch) ;PyPi doesn't have not prebuit version. @@ -3547,7 +3570,7 @@ functions, so that they can be called with scalar or array inputs.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1lwjs8vf3pc4a64c93fa5k6r276g1c60722swns2r10ig1s4wk0a")) + (base32 "175i99zwnnwglndr71paiadrx3xq3icxjgdqfv3xxpyn7fx4dzab")) (modules '((guix build utils))) (snippet ;; Symlink goes to not existing directory. @@ -3562,6 +3585,7 @@ functions, so that they can be called with scalar or array inputs.") ;; https://github.com/pynbody/pynbody/blob/ \ ;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \ ;; .github/workflows/build-test.yaml#L41 + "--ignore=tests/copy_on_access_test.py" "--ignore=tests/gravity_test.py" "--ignore=tests/adaptahop_test.py" "--ignore=tests/ahf_halos_test.py" @@ -3717,13 +3741,13 @@ datetime object.") (define-public python-synphot (package (name "python-synphot") - (version "1.2.1") - (source (origin - (method url-fetch) - (uri (pypi-uri "synphot" version)) - (sha256 - (base32 - "10kcdg2gqmi1w2hsjx9hfizwbff3kll10s68hys13nzh4i8b7cc4")))) + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "synphot" version)) + (sha256 + (base32 "0a54bfrx9aar66040324sw9qdjz5lg67y28sjsxhyv9h3gppc7c0")))) (build-system pyproject-build-system) (arguments (list @@ -3742,9 +3766,16 @@ datetime object.") (lambda (port) (format port "[pytest] python_files = test_*.py")))))))) - (propagated-inputs (list python-astropy python-numpy python-scipy)) - (native-inputs (list python-pytest python-pytest-astropy - python-setuptools-scm)) + (propagated-inputs + (list ;; python-dust-extinction ; XXX: Not packed yet, optional. + ;; python-specutils ; XXX: Not packed yet, optional. + python-astropy + python-numpy + python-scipy)) + (native-inputs + (list python-pytest + python-pytest-astropy + python-setuptools-scm)) (home-page "https://github.com/spacetelescope/synphot_refactor") (synopsis "Synthetic photometry using Astropy") (description @@ -3756,13 +3787,13 @@ of the old packages.") (define-public python-tweakwcs (package (name "python-tweakwcs") - (version "0.8.3") + (version "0.8.5") (source (origin (method url-fetch) (uri (pypi-uri "tweakwcs" version)) (sha256 (base32 - "09bd8b77rpn641cwmkhcyzx43xkx3va83wdcb47wcqqa7qgx9f1m")))) + "15gc2rc2isx3va6wbn4k1hi5qh49gq15cgbb2qqkbznd7f7d5ifv")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy python-gwcs @@ -4037,13 +4068,13 @@ install an implementation package such as asdf-astropy.") (define-public python-asdf-astropy (package (name "python-asdf-astropy") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (pypi-uri "asdf-astropy" version)) (sha256 - (base32 "1difb2y1hlalbhrw8znwmmc0vzgg44zfsay98lpllb7y0536fas6")))) + (base32 "061y7r1d2fqlr8a6gyaffqa3z5m0ymljahhvxzcb71355xkqig7v")))) (build-system pyproject-build-system) (arguments (list #:phases #~(modify-phases %standard-phases @@ -4097,13 +4128,13 @@ install an implementation package such as gwcs.") (define-public python-gwcs (package (name "python-gwcs") - (version "0.19.0") + (version "0.20.0") (source (origin (method url-fetch) (uri (pypi-uri "gwcs" version)) (sha256 - (base32 "1f3h41aq4nwcl6k80jb9s8shn2mhvz32mx9qhcm1xmcqrflqyf52")))) + (base32 "1vhvs0mcwrw0128q9pd9v21wl173lspj5rvygqr19ljncralbx73")))) (build-system pyproject-build-system) (native-inputs (list python-jsonschema @@ -4163,13 +4194,13 @@ Grace Roman Space Telescope.") (define-public python-radio-beam (package (name "python-radio-beam") - (version "0.3.6") + (version "0.3.7") (source (origin (method url-fetch) (uri (pypi-uri "radio-beam" version)) (sha256 - (base32 "19c6gmm1wvyp5nn1yfbzl428rkysdq273j2yaarxpivv7cwj7qjk")))) + (base32 "0dg6vqdhmzh47awdkkcbf455gw6if2qwxyhcqbq2dkhbwsx680gc")))) (build-system pyproject-build-system) (propagated-inputs (list python-astropy |