diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55cfc9facf..a345144cd1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1671,6 +1671,44 @@ dataset for the examples in package viper.") 5 batches. The data are used as an illustrative example for the sva package.") (license license:artistic2.0))) +(define-public r-bodymaprat + (package + (name "r-bodymaprat") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "bodymapRat" version + 'experiment)) + (sha256 + (base32 "1sfq6vxkb68l0q5qbnpm3fi53k4q9a890bv2ff9c6clhc42wx3h6")))) + (properties `((upstream-name . "bodymapRat"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ + (setenv "HOME" "/tmp"))) + (add-after 'unpack 'avoid-internet-access + (lambda _ + (setenv "GUIX_BUILD" "yes") + (substitute* "R/zzz.R" + (("createHubAccessors.*" m) + (string-append + "if (Sys.getenv(\"GUIX_BUILD\") == \"\") {" m "}")))))))) + (propagated-inputs (list r-experimenthub r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/bodymapRat") + (synopsis "Experimental dataset from the rat BodyMap project") + (description + "This package contains a @code{SummarizedExperiment} from the Yu et +al. (2013) paper that performed the rat @code{BodyMap} across 11 organs and 4 +developmental stages. Raw FASTQ files were downloaded and mapped using +STAR. Data is available on @code{ExperimentHub} as a data package.") + (license license:cc-by4.0))) + (define-public r-biscuiteerdata (package (name "r-biscuiteerdata") |