diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 111 |
1 files changed, 98 insertions, 13 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bc391d9afd..f3c90b073e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2131,14 +2131,14 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.9") + (version "0.4.10") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "14944vn0n5d095mpjyag4fz8vy04m6wxb6mmyygi8q813akikm3h")))) + "1xb1jq3mg4kw1513zv1i09vhn7rj7f8vp0bnms2qml74s47wxsgk")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -3839,18 +3839,20 @@ structure.") (define-public r-vioplot (package (name "r-vioplot") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "vioplot" version)) (sha256 (base32 - "1fsklymilspzz5fzlj7666x09aglaw0v4x0yfjjzy4vr5qpjc529")))) + "0aiy615kn9lpr2cs757g3pklg81n01yhqh0wrwv111fn3cy86r0v")))) (build-system r-build-system) (propagated-inputs `(("r-sm" ,r-sm) ("r-zoo" ,r-zoo))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler") (synopsis "Violin plot") (description @@ -6634,23 +6636,106 @@ be added or removed. When working with Word documents, a cursor can be used to help insert or delete content at a specific location in the document.") (license license:gpl3))) +(define-public r-profilemodel + (package + (name "r-profilemodel") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "profileModel" version)) + (sha256 + (base32 + "0yq8hy43h62hlz8bbf9ila4a3xcwizi1if27b78xc5y857ncwad8")))) + (properties `((upstream-name . "profileModel"))) + (build-system r-build-system) + (home-page "https://github.com/ikosmidis/profileModel") + (synopsis "Profiling inference functions for various model classes") + (description + "This package provides tools that can be used to calculate, evaluate, +plot and use for inference the profiles of *arbitrary* inference functions for +arbitrary @code{glm}-like fitted models with linear predictors. More information +on the methods that are implemented can be found in Kosmidis (2008) +@url{https://www.r-project.org/doc/Rnews/Rnews_2008-2.pdf}.") + (license license:gpl2+))) + +(define-public r-brglm + (package + (name "r-brglm") + (version "0.6.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "brglm" version)) + (sha256 + (base32 + "0c9ngscc6zlfm90fqyggnj04qfkhp5qgf5q3wnfpxwyc8cm47by2")))) + (properties `((upstream-name . "brglm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-profilemodel" ,r-profilemodel))) + (home-page "https://github.com/ikosmidis/brglm") + (synopsis "Bias reduction in binomial-response generalized linear models") + (description + "Fit generalized linear models with binomial responses using either an +adjusted-score approach to bias reduction or maximum penalized likelihood +where penalization is by Jeffreys invariant prior. These procedures return +estimates with improved frequentist properties (bias, mean squared error) that +are always finite even in cases where the maximum likelihood estimates are +infinite (data separation). Fitting takes place by fitting generalized linear +models on iteratively updated pseudo-data. The interface is essentially the +same as @code{glm}. More flexibility is provided by the fact that custom +pseudo-data representations can be specified and used for model fitting. +Functions are provided for the construction of confidence intervals for the +reduced-bias estimates.") + (license license:gpl2+))) + +(define-public r-entropy + (package + (name "r-entropy") + (version "1.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "entropy" version)) + (sha256 + (base32 + "10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd")))) + (properties `((upstream-name . "entropy"))) + (build-system r-build-system) + (home-page "https://www.strimmerlab.org/software/entropy/") + (synopsis "Estimation of entropy, mutual information and related quantities") + (description + "This package implements various estimators of entropy, such as the +shrinkage estimator by Hausser and Strimmer, the maximum likelihood and the +Millow-Madow estimator, various Bayesian estimators, and the Chao-Shen +estimator. It also offers an R interface to the NSB estimator. Furthermore, +it provides functions for estimating Kullback-Leibler divergence, chi-squared, +mutual information, and chi-squared statistic of independence. In addition +there are functions for discretizing continuous random variables.") + (license license:gpl3+))) + (define-public r-abn (package (name "r-abn") - (version "2.2") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "abn" version)) (sha256 (base32 - "19w6bdjyp4zwqs6p0flry4qxqynf9rh8ykdrfrp61wrdf7kysw0d")))) + "11nbg6dwvbj0ac7qvr203vzjnw5zc1a8cibb9l6rzzr7yfg16xzc")))) (build-system r-build-system) (inputs `(("gsl" ,gsl))) (propagated-inputs - `(("r-lme4" ,r-lme4) + `(("r-boot" ,r-boot) + ("r-brglm" ,r-brglm) + ("r-entropy" ,r-entropy) + ("r-lme4" ,r-lme4) ("r-mass" ,r-mass) + ("r-moments" ,r-moments) ("r-nnet" ,r-nnet) ("r-rcpp" ,r-rcpp) ("r-rcpparmadillo" ,r-rcpparmadillo) @@ -8922,14 +9007,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "08i9ngvga06abs2k50gvkh6iwl4r77bkmmchsqjibsy09wdvd8xj")))) + "0gw165wm2a0vjsvyll8z9k6qd156z3jf4priy1r745v63x4mnb5k")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -11769,14 +11854,14 @@ dynamical correlation and dynamical covariance.") (define-public r-genenet (package (name "r-genenet") - (version "1.2.14") + (version "1.2.15") (source (origin (method url-fetch) (uri (cran-uri "GeneNet" version)) (sha256 (base32 - "0cdhrj15rz0w0pyw3r8mikrzsdh95y5i1c0pa3cn0c2bjnjx3x3n")))) + "11ba6ahsk3x9alvcw8bai2bpg84ki1m8nadrjjdhjg65svhw8njm")))) (properties `((upstream-name . "GeneNet"))) (build-system r-build-system) (propagated-inputs @@ -15839,14 +15924,14 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "1.0.0.2") + (version "1.1.1.1") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "1ld2w51c5fy3bl0kvjn1iplffc4lmin9s9zz5xx7xsm44d6j6kzd")))) + "13njhcxljhbcs37ni6r5174fk8kx9b5p7rlw1an1ak3w92jn56cq")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) |