diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 297 |
1 files changed, 195 insertions, 102 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index baf1e0c18a..fff71790b6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -179,13 +179,13 @@ respecting the grammar of its graphics paradigm.") (define-public r-scales (package (name "r-scales") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "scales" version)) (sha256 - (base32 "00rdbfj5mwc3kr8pskidn3n2zkp4ms6cx36xazz54pxw3pysdr0y")))) + (base32 "019ps0njjc0rzrjygqiyn8b9vp0c3c0jd56h1yi19wzi49jvdcj0")))) (build-system r-build-system) (propagated-inputs `(("r-farver" ,r-farver) @@ -596,14 +596,14 @@ the embedded @code{RapidXML} C++ library.") (define-public r-modelr (package (name "r-modelr") - (version "0.1.6") + (version "0.1.7") (source (origin (method url-fetch) (uri (cran-uri "modelr" version)) (sha256 (base32 - "1x2m34m4qirb401krmgc5wg3g7ndbcglfab2l0655rmky3fz7rfp")))) + "1nln33ajad0c917hmal4v6fbw8rncsch9xz5sifqfw6wgqjx9yy6")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) @@ -1480,7 +1480,7 @@ applications. That is, compute distances and related measures for angular (base32 "1a8mi70x79a691r40yiw684jkg1mr9n8agkxlcksxcnrdybs9c0x")))) (build-system r-build-system) - (inputs `(("libjpeg" ,libjpeg))) + (inputs `(("libjpeg" ,libjpeg-turbo))) (home-page "https://www.rforge.net/jpeg/") (synopsis "Read and write JPEG images with R") (description "This package provides a way to read, write and display @@ -1753,13 +1753,13 @@ print, summary, plot, update, etc. (define-public r-ps (package (name "r-ps") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "ps" version)) (sha256 - (base32 "0127q6pw9iw8hhcfp231gmdh29nahh2n5jzc38avrzy7yrm4bwl9")))) + (base32 "1x10zgvq75gnkmzqhbqn6jyvp9h1y4qxgnbdds0bwmc8ad8md903")))) (build-system r-build-system) (home-page "https://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") @@ -1771,13 +1771,13 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.0.6") + (version "1.0.8") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 - (base32 "0xnlz6ivhkbmncg9hfw5p69lm4rjy3wn5lyxmygxyf4rrfnnqwxx")))) + (base32 "188r2ba7y5j80mnfqdf210af40yd28jjgx7rbya4iwcfx7rzqjdi")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -1974,19 +1974,21 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.8") + (version "0.4.9") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "0jvr9hmxyhg0zx101iiqkrg8wfaj86kp62xpv42n2j9fkn5r1mi2")))) + "14944vn0n5d095mpjyag4fz8vy04m6wxb6mmyygi8q813akikm3h")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) ("r-globaloptions" ,r-globaloptions) ("r-shape" ,r-shape))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/jokergoo/circlize") (synopsis "Circular visualization") (description @@ -2272,14 +2274,14 @@ plot networks.") (define-public r-proxy (package (name "r-proxy") - (version "0.4-23") + (version "0.4-24") (source (origin (method url-fetch) (uri (cran-uri "proxy" version)) (sha256 (base32 - "17b6qfllqrhzrxqgx7dccffgybnkcria5a68ap5ly3plg04ypm4x")))) + "0z4wdnpv5x135nssxnmkkba7fivd5xgbpaabqjkl2na76vq9pzwc")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/proxy") (synopsis "Distance and similarity measures") @@ -2410,14 +2412,14 @@ SpatialVx.") (define-public r-extremes (package (name "r-extremes") - (version "2.0-11") + (version "2.0-12") (source (origin (method url-fetch) (uri (cran-uri "extRemes" version)) (sha256 (base32 - "0hmgynxhzswqnhwb2sxrkczgam8c17s3vpxqc5bcz0bwczpxxyvm")))) + "0wldzvj1h93jksq31dw9zgnr1wrqwmfr9qwmg7qk7nznsn2yy1h2")))) (properties `((upstream-name . "extRemes"))) (build-system r-build-system) (propagated-inputs @@ -3259,14 +3261,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.10") + (version "0.1.12") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "11f96aanrzi2v6cn49fhvf9y4cmhra63wcy6nvpv6hcfaqqmwd2g")))) + "0hbnrqgzazg401nk5fhljif7wnspicki179qf215r34y9wm8g3xj")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -4229,14 +4231,14 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.2.4") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "15sgzs6afvmhssk6jcg41rn3bvmzmbm4sgca6f6x8lfrsazvdj6w")))) + "0ay1fk05mk6cnpfbzqwx6pjxmjk3ipx5xx6k0sbh81r5bqj17vpn")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -4268,14 +4270,14 @@ to variables on the left-hand side of the assignment.") (define-public r-pillar (package (name "r-pillar") - (version "1.4.3") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "02sn7zw80wq33jgxk2i6m5jb83sk7y72dfhgyy0apfinv05w92ss")))) + "0viymfp1rkr7ig3m1b016r75hk8qbr9cqsjc6c20ks9pm5svmsp1")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -5357,14 +5359,14 @@ specific S3-method.") (define-public r-vim (package (name "r-vim") - (version "5.1.1") + (version "6.0.0") (source (origin (method url-fetch) (uri (cran-uri "VIM" version)) (sha256 (base32 - "0w22ir0gvym7gqd6nw2j7w5ivlb3az1dkfxv33imimkb7c83056a")))) + "0ddhca4v912q82rjpf1qld6i6g2c381g0v5b4hbnygr3lm6a7wiv")))) (properties `((upstream-name . "VIM"))) (build-system r-build-system) (propagated-inputs @@ -5381,6 +5383,8 @@ specific S3-method.") ("r-robustbase" ,r-robustbase) ("r-sp" ,r-sp) ("r-vcd" ,r-vcd))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/alexkowa/VIM") (synopsis "Visualization and imputation of missing values") (description @@ -5632,19 +5636,21 @@ additional external tools on any platform.") (define-public r-openxlsx (package (name "r-openxlsx") - (version "4.1.4") + (version "4.1.5") (source (origin (method url-fetch) (uri (cran-uri "openxlsx" version)) (sha256 (base32 - "1mwxldw9i9nfksx1i6h1kfs7vmsz9fgyllbsipar4vnfyqhqp8q7")))) + "0wkpa3wsd8rs0pib7cp67iv0s6jn99frcrw7clypqxmvvdwyb9kq")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) ("r-stringi" ,r-stringi) ("r-zip" ,r-zip))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/awalker89/openxlsx") (synopsis "Read, write and edit XLSX files") (description @@ -5837,16 +5843,18 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-renv (package (name "r-renv") - (version "0.9.3") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "02ayfgbpw4b58148dcxz31anaxncwczmxs1zzkskwj0rzhb2x60r")))) + "0yy24kq60dh9n68my132xhhkbnbs7q91z55b1yd6ymr7rxj32mif")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://rstudio.github.io/renv") (synopsis "Project environments") (description @@ -6049,17 +6057,53 @@ single layer that takes the groups for comparison and the test as arguments and adds the annotation to the plot.") (license license:gpl3))) +(define-public r-rstatix + (package + (name "r-rstatix") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rstatix" version)) + (sha256 + (base32 + "0ikbjmr58ah39rlwyiix50kl3yk9j7jngsvl6hh973392qdvmch6")))) + (properties `((upstream-name . "rstatix"))) + (build-system r-build-system) + (propagated-inputs + `(("r-broom" ,r-broom) + ("r-car" ,r-car) + ("r-corrplot" ,r-corrplot) + ("r-dplyr" ,r-dplyr) + ("r-magrittr" ,r-magrittr) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) + ("r-tidyselect" ,r-tidyselect))) + (home-page "https://rpkgs.datanovia.com/rstatix/") + (synopsis "Pipe-friendly framework for basic statistical tests") + (description + "This package provides a simple and intuitive pipe-friendly framework, +coherent with the @code{tidyverse} design philosophy, for performing basic +statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and +correlation analyses. The output of each test is automatically transformed +into a tidy data frame to facilitate visualization. Additional functions are +available for reshaping, reordering, manipulating and visualizing correlation +matrix.") + (license license:gpl2))) + (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.2.5") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0kb3hpmnhj4mkbx1kx0kv5y22himr8dijqx7ra0h8hi0pf2l2ha7")))) + "1dly74cnn8iq7vsgmcz0czszdsmg5cgzm4w3s0v30k4psmmzqbxq")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) @@ -6075,6 +6119,8 @@ and adds the annotation to the plot.") ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) + ("r-rstatix" ,r-rstatix) + ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr))) (home-page "http://www.sthda.com/english/rpkgs/ggpubr") (synopsis "ggplot2-based publication-ready plots") @@ -6391,14 +6437,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.8") + (version "0.3.9") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "0xhx5n6qksyh2s9hvwhnc8y0hn362asc5y94ld06snad786hz0rw")))) + "0kp8rmab917zimnyc0rz37czf5f044z9naiyq0yxw68i990ikxf7")))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) @@ -6603,18 +6649,19 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "1amq7i9sxf0pkxhskqc53xq5wvc9rdxm7cxyb4b6xh6qsskjnlsj")))) + "00dnrvwf7zbaq07hkh4rx24pvi5bwkl4npf6ycg101s63633dq5m")))) (build-system r-build-system) (propagated-inputs - `(("r-haven" ,r-haven) - ("r-insight" ,r-insight))) + `(("r-insight" ,r-insight))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/strengejacke/sjlabelled") (synopsis "Labelled data utility functions") (description @@ -6740,14 +6787,14 @@ documents.") (define-public r-writexl (package (name "r-writexl") - (version "1.2") + (version "1.3") (source (origin (method url-fetch) (uri (cran-uri "writexl" version)) (sha256 (base32 - "09fhdip6igcg97fjx4c7727cx2lb49l4d74l4i8rg2bag2s5lrj3")))) + "0lah0r2pd996s0vdbi614j3h52dbxmifha6f19v53p2b7fr32wjd")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) (home-page "https://github.com/ropensci/writexl") @@ -7084,14 +7131,14 @@ bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.") (define-public r-rootsolve (package (name "r-rootsolve") - (version "1.8.2") + (version "1.8.2.1") (source (origin (method url-fetch) (uri (cran-uri "rootSolve" version)) (sha256 (base32 - "0rj7c4zcrzgz7sb0vgvh7swpfafnw4040cxp7ypas3s8fnihn54l")))) + "0c9hhgq1pgqdg80a6n2ssfbj5nyaf97y4iiya7j7l6b34qc53128")))) (properties `((upstream-name . "rootSolve"))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -8603,13 +8650,13 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.17.9") + (version "0.18.0") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 - (base32 "0938ac6ixvkif07azd2msa8g3qnn9rabj6jg17almbysl83kg4nm")))) + (base32 "17b1fcrhgjw66qa8zk2jj1bvz3vp5bnjn3p4y1wsg5ng5nxq8jz0")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -8705,14 +8752,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "0j6wmnwhfdd3v1a17qmg491q50579knjzscmyr4yk3xr0jbsbg8x")))) + "08i9ngvga06abs2k50gvkh6iwl4r77bkmmchsqjibsy09wdvd8xj")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -8920,14 +8967,14 @@ terminals that do not support Unicode.") (define-public r-usethis (package (name "r-usethis") - (version "1.6.0") + (version "1.6.1") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "12iyimqyza752anj29wpfisl8nz5r25kfcqbssybg24nb4wyy146")))) + "0vwxsnq615mwc706a4a71gyy0hmvnllbh249gzm7vl3ym5cr0cv0")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -9141,14 +9188,14 @@ users.") (define-public r-lsei (package (name "r-lsei") - (version "1.2-0") + (version "1.2-0.1") (source (origin (method url-fetch) (uri (cran-uri "lsei" version)) (sha256 (base32 - "1xl06fb3is744pxlh42wx5hn1h0ab1k31wnmsmh0524kxzcyp0a7")))) + "1rvzdb33x9ykl5qfwxkps1iylxqzlf1qla3l88420nbq7pxp7m87")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -9164,14 +9211,14 @@ problems into least squares ones first.") (define-public r-npsurv (package (name "r-npsurv") - (version "0.4-0") + (version "0.4-0.1") (source (origin (method url-fetch) (uri (cran-uri "npsurv" version)) (sha256 (base32 - "1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20")))) + "09nxibp93bp9v8qcx0gnazk7fkvyh0fq9vlgxl639m6ndr7fwp88")))) (build-system r-build-system) (propagated-inputs `(("r-lsei" ,r-lsei))) @@ -9447,14 +9494,14 @@ package provides a minimal R interface by relying on the Rcpp package.") (define-public r-rcppparallel (package (name "r-rcppparallel") - (version "5.0.0") + (version "5.0.1") (source (origin (method url-fetch) (uri (cran-uri "RcppParallel" version)) (sha256 (base32 - "1mhd6vp47xmfw533h0pkvydv96m57fspvd85g8m7iqb5rcxvhhdb")))) + "029yyjnixggqmddazwxh1wqid1h7xpwpi4sgixyhbb4kmvqlwfkd")))) (properties `((upstream-name . "RcppParallel"))) (build-system r-build-system) (home-page "https://rcppcore.github.io/RcppParallel/") @@ -9655,14 +9702,14 @@ features (e.g. local modes).") (define-public r-arm (package (name "r-arm") - (version "1.10-1") + (version "1.11-1") (source (origin (method url-fetch) (uri (cran-uri "arm" version)) (sha256 (base32 - "0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg")))) + "0i2lnm09bqy1qw0ms5pw0rzw196xmnk5dxha3g8lc58lqpldp0kv")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) @@ -9900,7 +9947,7 @@ redundant complex conjugate when the input is real data.") (build-system r-build-system) (inputs `(("libtiff" ,libtiff) - ("libjpeg" ,libjpeg) + ("libjpeg" ,libjpeg-turbo) ("zlib" ,zlib))) (home-page "https://www.rforge.net/tiff/") (synopsis "Read and write TIFF images") @@ -10801,14 +10848,14 @@ and manipulating sets of ontological terms.") (define-public r-gargle (package (name "r-gargle") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "gargle" version)) (sha256 (base32 - "08zhfk2sl342w35i5n2c93ayypg3z0kbl0020l3y9adqka1vazgx")))) + "1fykmiv3x8c9ai31r9wr7qcca51h6kqn9cgwbxvxfj15fhwskh4n")))) (build-system r-build-system) (propagated-inputs `(("r-fs" ,r-fs) @@ -10817,6 +10864,8 @@ and manipulating sets of ontological terms.") ("r-jsonlite" ,r-jsonlite) ("r-rlang" ,r-rlang) ("r-withr" ,r-withr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://gargle.r-lib.org") (synopsis "Utilities for working with Google APIs") (description @@ -10828,14 +10877,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "1ggh2gngr5x0g6y7d55y6kvn94anf7qi1bkc28cjmw61hxjq38fb")))) + "0j8asipnb4fg4kk3apy37ywqq78ncmqh9wq015xpww2zb9shnbvf")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -11599,14 +11648,14 @@ library.") (define-public r-protviz (package (name "r-protviz") - (version "0.6.4") + (version "0.6.8") (source (origin (method url-fetch) (uri (cran-uri "protViz" version)) (sha256 (base32 - "1qq9bf4485x8cviry9fmhnv4hw9aw657w134003myzcv42c4pml6")))) + "0rn8fjg7791a4j2k1kk1jwx40xz20bfaavvflmhyzpl398vmmy3a")))) (properties `((upstream-name . "protViz"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -12849,14 +12898,14 @@ plotting functions are available for analyzing clustering results.") (define-public r-valr (package (name "r-valr") - (version "0.5.0") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "valr" version)) (sha256 (base32 - "14jhrwkiwmha3vlmm7b50n2xxyizj6ddmy89gb20mpzq7qhz1ika")))) + "1qxw6h63i2vfb2w6q453zzwk0ypma3xdwwpj15i06669vzgyy3bb")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) @@ -12867,6 +12916,8 @@ plotting functions are available for analyzing clustering results.") ("r-rlang" ,r-rlang) ("r-stringr" ,r-stringr) ("r-tibble" ,r-tibble))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "http://github.com/rnabioco/valr") (synopsis "Genome interval arithmetic in R") (description @@ -12878,14 +12929,14 @@ R, enabling interactive analysis and visualization of genome-scale data.") (define-public r-rematch2 (package (name "r-rematch2") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "rematch2" version)) (sha256 (base32 - "13siaa8s2ji9q6hykhb2r34ag76335ypmbqr90xaqilbir0klhnh")))) + "1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y")))) (build-system r-build-system) (propagated-inputs `(("r-tibble" ,r-tibble))) @@ -13355,14 +13406,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.9-2") + (version "0.9-3") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "01xplgy5nlwy3ajfch4h1ssa1xhm7q0jzscpz04dmvgqfzwhhdfh")))) + "0qh9jxj88rhkwcd95g0l57cdrz5qqjw1b9yysz1hp9cp99485hcx")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -13426,14 +13477,14 @@ spanning tree.") (define-public r-adegenet (package (name "r-adegenet") - (version "2.1.2") + (version "2.1.3") (source (origin (method url-fetch) (uri (cran-uri "adegenet" version)) (sha256 (base32 - "01fgrgbiddz2q4l3mx637hhwbs7r0c43yw7vpwl8p8pwbm3nykz0")))) + "1ipnawi0qfd4rfwj37igvh36x1a9d8x4n7xynn1jcr12rd713407")))) (build-system r-build-system) (propagated-inputs `(("r-ade4" ,r-ade4) @@ -13572,13 +13623,13 @@ either PDF/EPS files.") (define-public r-polspline (package (name "r-polspline") - (version "1.1.17") + (version "1.1.18") (source (origin (method url-fetch) (uri (cran-uri "polspline" version)) (sha256 - (base32 "0c7fnxpqpy3hibiim4yib6l6bq363s97wwvllxp4lp8h06fjcyyn")))) + (base32 "00h1xg89wncfj2nk68zv7vphfcc68s7k0l5s9511bzxz8khhw9fz")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/polspline/") @@ -15435,14 +15486,14 @@ classification and regression models.") (define-public r-dalex (package (name "r-dalex") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "0mfcci54622gnk8al9fl2jhs9i2vfly7lam04y5rdacbyiam49j6")))) + "0lx8nasm1zgh1ckz8nw3ysp6xjv3dsj39hzhr6k3xhh6i8pm9rxk")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs @@ -15510,14 +15561,14 @@ includes data sets from oceanography.") (define-public r-ggfortify (package (name "r-ggfortify") - (version "0.4.9") + (version "0.4.10") (source (origin (method url-fetch) (uri (cran-uri "ggfortify" version)) (sha256 (base32 - "1p6knrbyaynaqwd939w09hpf1zz1gn95cb46sfgppl8l98krb2h5")))) + "0wmcwp63h90v3f00ixszvis4z28im621jickvc0wgi6qvjvnayq0")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -16026,14 +16077,14 @@ both R code and compiled C/C++/FORTRAN code.") (define-public r-systemfonts (package (name "r-systemfonts") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "systemfonts" version)) (sha256 (base32 - "1aba07djvxqdmnsdbwvzcsbm2fddnhrssa54xyrlviiwsv2c1qsd")))) + "0dna00xai0pw76b4830yy4r5j1hq7f7kla67v0iz39cjm4rq4ygq")))) (properties `((upstream-name . "systemfonts"))) (build-system r-build-system) (inputs @@ -16055,14 +16106,14 @@ be used further by e.g. graphic devices.") (define-public r-graphlayouts (package (name "r-graphlayouts") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "graphlayouts" version)) (sha256 (base32 - "1la016m37kp79zk8p1yx9kaha8y6d4w52w39h0mzv1mfsi6d75w0")))) + "17lc75k8i3c696hfj44zj7j1a5sb0nap8spc5r98v7vd6xh4nii0")))) (properties `((upstream-name . "graphlayouts"))) (build-system r-build-system) (propagated-inputs @@ -16082,14 +16133,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-tidygraph (package (name "r-tidygraph") - (version "1.1.2") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "tidygraph" version)) (sha256 (base32 - "1zpsarm74afbc7p5dlyb0whc09670qdcddw1ckb25cfc9hfh0hjn")))) + "17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85")))) (properties `((upstream-name . "tidygraph"))) (build-system r-build-system) (propagated-inputs @@ -16818,14 +16869,14 @@ server-side.") (define-public r-sysfonts (package (name "r-sysfonts") - (version "0.8") + (version "0.8.1") (source (origin (method url-fetch) (uri (cran-uri "sysfonts" version)) (sha256 (base32 - "0wng902plryf2d8fc7k7m3jx11acz51kb2d91cqbyhq7xpk06z43")))) + "1xp40hchjfif80a6jj210ghrjcvjjf66vqcssdy7a1j53nl1n994")))) (properties `((upstream-name . "sysfonts"))) (build-system r-build-system) (inputs @@ -16866,14 +16917,14 @@ package.") (define-public r-showtext (package (name "r-showtext") - (version "0.7-1") + (version "0.8") (source (origin (method url-fetch) (uri (cran-uri "showtext" version)) (sha256 (base32 - "0a5gg72bfrc7wm0phj1aflj1wc08kfi81ac32na6ya9s2ivyimw5")))) + "15v90s061iz9i655xin7kqb6ahnski55pgz3329wcz60bnbjb82x")))) (properties `((upstream-name . "showtext"))) (build-system r-build-system) (inputs @@ -16883,7 +16934,9 @@ package.") (propagated-inputs `(("r-showtextdb" ,r-showtextdb) ("r-sysfonts" ,r-sysfonts))) - (native-inputs `(("pkg-config" ,pkg-config))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("r-knitr" ,r-knitr))) (home-page "https://github.com/yixuan/showtext") (synopsis "Using fonts more easily in R graphs") (description @@ -17171,14 +17224,14 @@ data.") (define-public r-mda (package (name "r-mda") - (version "0.4-10") + (version "0.5") (source (origin (method url-fetch) (uri (cran-uri "mda" version)) (sha256 (base32 - "19g6kn6g0shidrjfffklbmzc5w7mcimrxhagx4nmpslg59ibqdkh")))) + "01pjrz9xv1rx78ndy0x9dc32ws8brcvwyb500m1f0dqd42375vmx")))) (properties `((upstream-name . "mda"))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class))) @@ -18630,7 +18683,7 @@ currently limited to 8 bit greyscale images and 24, 32 bit (A)RGB images.") (properties `((upstream-name . "readbitmap"))) (build-system r-build-system) (inputs - `(("libjpeg" ,libjpeg) + `(("libjpeg" ,libjpeg-turbo) ("libpng" ,libpng))) (propagated-inputs `(("r-bmp" ,r-bmp) @@ -18648,14 +18701,14 @@ number embedded in the file rather than the file extension.") (define-public r-imager (package (name "r-imager") - (version "0.42.1") + (version "0.42.3") (source (origin (method url-fetch) (uri (cran-uri "imager" version)) (sha256 (base32 - "1d7a49lcna77wyfjf5q1b89jck3p3vnysnkgz4drb0qkpy6hz76b")))) + "1wxvbv803222gjrf1ys6a349xlnmmdw3kqgi93piq9gq7lahihvg")))) (properties `((upstream-name . "imager"))) (build-system r-build-system) (inputs @@ -18673,7 +18726,9 @@ number embedded in the file rather than the file extension.") ("r-rcpp" ,r-rcpp) ("r-readbitmap" ,r-readbitmap) ("r-stringr" ,r-stringr))) - (native-inputs `(("pkg-config" ,pkg-config))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("r-knitr" ,r-knitr))) (home-page "https://dahtah.github.io/imager/") (synopsis "Image processing library") (description @@ -18795,14 +18850,14 @@ functions.") (define-public r-univoutl (package (name "r-univoutl") - (version "0.1-5") + (version "0.2") (source (origin (method url-fetch) (uri (cran-uri "univOutl" version)) (sha256 (base32 - "193wrpkvgmlrx43nag8w3ivrlqm37nm6g86wcvd3bgw3hchs70gi")))) + "0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v")))) (properties `((upstream-name . "univOutl"))) (build-system r-build-system) (propagated-inputs @@ -19309,14 +19364,14 @@ automatically show a loader when the output is (re)calculating.") (define-public r-rsvg (package (name "r-rsvg") - (version "1.3") + (version "2.0") (source (origin (method url-fetch) (uri (cran-uri "rsvg" version)) (sha256 (base32 - "11mccgf6hfskg45wqc114sx3qy2r494y6axdf73z6xwhs1wpm97g")))) + "0r066lvyfvhsjjpiad259f1m3qk5w7hxhbyjzhlryzf3fy0hvh29")))) (properties `((upstream-name . "rsvg"))) (build-system r-build-system) (inputs @@ -20159,14 +20214,14 @@ and analyze Stan models.") (define-public r-rpf (package (name "r-rpf") - (version "1.0.3") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "1i2kqd7nx55nn35qnw89xmnqk23x9c8xhkh736c2xg7k2ai84ybl")))) + "17crcgsbcsh0c00n7bgdqfnd7n1vzz7drfxjs7d18253yl5x44pl")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs @@ -20174,6 +20229,8 @@ and analyze Stan models.") ("r-mvtnorm" ,r-mvtnorm) ("r-rcpp" ,r-rcpp) ("r-rcppeigen" ,r-rcppeigen))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/jpritikin/rpf") (synopsis "Response probability functions") (description @@ -20219,19 +20276,18 @@ estimate parameters given observed data.") (define-public r-kutils (package (name "r-kutils") - (version "1.69") + (version "1.70") (source (origin (method url-fetch) (uri (cran-uri "kutils" version)) (sha256 (base32 - "12pg26a85h0jxlfcyai68dbh4bq1gnq8v1ngi8k9qvafbrpc6gx8")))) + "06jk66wbq3jmdf2jdhqns6r3yk36l2x7c907x977zv80sqxa1l37")))) (properties `((upstream-name . "kutils"))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) - ("r-lavaan" ,r-lavaan) ("r-openxlsx" ,r-openxlsx) ("r-plyr" ,r-plyr) ("r-runit" ,r-runit) @@ -20469,14 +20525,14 @@ well as Ravand and Robitzsch (2015).") (define-public r-tam (package (name "r-tam") - (version "3.4-26") + (version "3.5-19") (source (origin (method url-fetch) (uri (cran-uri "TAM" version)) (sha256 (base32 - "111d7qkxhwh1lfvldyh9d61pdb5vb6x8lr8n9h95ssvw07vjqvk9")))) + "1x1pdy0hrk4c3x5l4gcslpvyb0sv2zgly4n3a7y8j6yrzajx0sg7")))) (properties `((upstream-name . "TAM"))) (build-system r-build-system) (propagated-inputs @@ -21633,3 +21689,40 @@ infinite-precision rational arithmetic.") Archive Toolkit. Rxnat uses the XNAT REST API to perform data queries and download images.") (license license:gpl2))) + +(define-public r-rserve + (package + (name "r-rserve") + (version "1.8-6") + (source + (origin + (method url-fetch) + (uri (string-append "http://www.rforge.net/Rserve/snapshot/Rserve_" + version ".tar.gz")) + (sha256 + (base32 + "017kkzv9lxlz9qhg3gprrf1wcyflxrif6wjk27x9b4bdzylw6bsx")))) + (build-system r-build-system) + (propagated-inputs + `(("r-checkmate" ,r-checkmate) + ("r-mime" ,r-mime) + ("r-jsonlite" ,r-jsonlite) + ("r-knitr" ,r-knitr) + ("r-r6" ,r-r6) + ("r-rcpp" ,r-rcpp) + ("r-uuid" ,r-uuid))) + (inputs + `(("openssl" ,openssl) + ("zlib" ,zlib))) + (home-page "https://github.com/s-u/Rserve") + (synopsis + "Server providing access to R from many languages and systems") + (description + "Rserve acts as a socket server (TCP/IP or local sockets) which allows +binary requests to be sent to R. Every connection has a separate workspace +and working directory. Client-side implementations are available for popular +languages such as C/C++ and Java, allowing any application to use facilities +of R without the need of linking to R code. Rserve supports remote +connection, user authentication and file transfer. A simple R client is +included in this package as well.") + (license license:gpl2))) |