diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 50 |
1 files changed, 32 insertions, 18 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index ee6c75e1a0..b1680db063 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -307,13 +307,13 @@ programming language.") (define-public units (package (name "units") - (version "2.19") + (version "2.21") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/units/units-" version ".tar.gz")) (sha256 (base32 - "0mk562g7dnidjgfgvkxxpvlba66fh1ykmfd9ylzvcln1vxmi6qj2")))) + "1bybhqs4yrly9myb5maz3kdmf8k4fhk2m1d5cbcryn40z6lq0gkc")))) (build-system gnu-build-system) (inputs `(("readline" ,readline) @@ -1207,7 +1207,7 @@ extremely large and complex data collections.") (define-public hdf5 ;; Default version of HDF5. - hdf5-1.8) + hdf5-1.10) (define-public hdf-java (package @@ -1239,7 +1239,7 @@ extremely large and complex data collections.") ("slf4j-simple" ,java-slf4j-simple))) (inputs `(("hdf4" ,hdf4) - ("hdf5" ,hdf5) + ("hdf5" ,hdf5-1.8) ("zlib" ,zlib) ("libjpeg" ,libjpeg-turbo) ("slf4j-api" ,java-slf4j-api))) @@ -1399,7 +1399,7 @@ System (Grid, Point and Swath).") `(("gfortran" ,gfortran))) (build-system gnu-build-system) (inputs - `(("hdf5" ,hdf5) + `(("hdf5" ,hdf5-1.8) ("zlib" ,zlib) ("gctp" ,gctp))) (arguments @@ -1500,7 +1500,7 @@ Blosc-compressed datasets.") (base32 "1gm76jbwhz9adbxgn14zx8cj33dmjdr2g5xcy0m9c2gakp8w59kj")))) (build-system gnu-build-system) - (inputs `(("hdf5" ,hdf5))) ;h5cc for tests + (inputs `(("hdf5" ,hdf5-1.8))) ;h5cc for tests (home-page "https://www.hdfgroup.org/products/hdf5_tools/h5check.html") (synopsis "HDF5 format checker") (description "@code{h5check} is a validation tool for verifying that an @@ -1542,17 +1542,17 @@ similar to MATLAB, GNU Octave or SciPy.") (define-public netcdf (package (name "netcdf") - (version "4.4.1.1") + (version "4.7.4") (source (origin (method url-fetch) - (uri (string-append "ftp://ftp.unidata.ucar.edu/pub/netcdf/" - "netcdf-" version ".tar.gz")) + (uri (string-append + "https://www.unidata.ucar.edu/downloads/netcdf/ftp/" + "netcdf-c-" version ".tar.gz")) (sha256 (base32 - "1blc7ik5yin7i0ls2kag0a9xjk12m0dzx6v1x88az3ras3scci2d")) - (patches (search-patches "netcdf-date-time.patch" - "netcdf-tst_h_par.patch")))) + "1a2fpp15a2rl1m50gcvvzd9y6bavl6vjf9zzf63sz5gdmq06yiqf")) + (patches (search-patches "netcdf-date-time.patch")))) (build-system gnu-build-system) (native-inputs `(("m4" ,m4) @@ -1561,6 +1561,7 @@ similar to MATLAB, GNU Octave or SciPy.") (inputs `(("hdf4" ,hdf4-alt) ("hdf5" ,hdf5) + ("curl" ,curl) ("zlib" ,zlib) ("libjpeg" ,libjpeg-turbo))) (arguments @@ -1622,7 +1623,7 @@ sharing of scientific data.") (define-public netcdf-fortran (package (name "netcdf-fortran") - (version "4.4.4") + (version "4.5.3") (source (origin (method url-fetch) (uri (string-append @@ -1630,7 +1631,7 @@ sharing of scientific data.") version ".tar.gz")) (sha256 (base32 - "0xaxdcg1p83zmypwml3swsnr3ccn38inwldyr1l3wa4dbwbrblxj")))) + "0x4acvfhbsx1q79dkkwrwbgfhm0w5ngnp4zj5kk92s1khihmqfhj")))) (build-system gnu-build-system) (arguments `(#:parallel-tests? #f)) @@ -2473,7 +2474,18 @@ scientific applications modeled by partial differential equations.") (uri (pypi-uri "petsc4py" version)) (sha256 (base32 - "1rm1qj5wlkhxl39by9n78lh3gbmii31wsnb8j1rr5hvfr5xgbx2q")))) + "1rm1qj5wlkhxl39by9n78lh3gbmii31wsnb8j1rr5hvfr5xgbx2q")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Ensure source file is regenerated in the build phase. + (delete-file "src/petsc4py.PETSc.c") + ;; Remove legacy GC code. See + ;; https://bitbucket.org/petsc/petsc4py/issues/125. + (substitute* "src/PETSc/cyclicgc.pxi" + ((".*gc_refs.*") "" ) + ((".*PyGC_Head.*") "")) + #t)))) (build-system python-build-system) (arguments `(#:phases @@ -2485,6 +2497,8 @@ scientific applications modeled by partial differential equations.") #t)) (add-before 'check 'mpi-setup ,%openmpi-setup)))) + (native-inputs + `(("python-cython" ,python-cython))) (inputs `(("petsc" ,petsc-openmpi) ("python-numpy" ,python-numpy))) @@ -2898,14 +2912,14 @@ easy-to-write markup language for mathematics.") (define-public superlu (package (name "superlu") - (version "5.2.1") + (version "5.2.2") (source (origin (method url-fetch) (uri (string-append "https://portal.nersc.gov/project/sparse/superlu/" "superlu_" version ".tar.gz")) (sha256 - (base32 "0qzlb7cd608q62kyppd0a8c65l03vrwqql6gsm465rky23b6dyr8")) + (base32 "13520vk6fqspyl22cq4ak2jh3rlmhja4czq56j75fdx65fkk80s7")) (modules '((guix build utils))) (snippet ;; Replace the non-free implementation of MC64 with a stub adapted @@ -4542,7 +4556,7 @@ structured and unstructured grid problems."))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) - ("hdf5" ,hdf5))) + ("hdf5" ,hdf5-1.8))) (home-page "http://matio.sourceforge.net/") (synopsis "Library for reading and writing MAT files") (description "Matio is a library for reading and writing MAT files. It |