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Diffstat (limited to 'gnu/packages/python-xyz.scm')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 4128 |
1 files changed, 3384 insertions, 744 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 6b1ce2c9a3..03b83b188b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013, 2014, 2015, 2016, 2019 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2014, 2017, 2021 Eric Bavier <bavier@posteo.net> @@ -8,7 +8,7 @@ ;;; Copyright © 2015 Omar Radwan <toxemicsquire4@gmail.com> ;;; Copyright © 2015 Pierre-Antoine Rault <par@rigelk.eu> ;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2015, 2016, 2020 Christopher Allan Webber <cwebber@dustycloud.org> +;;; Copyright © 2015, 2016, 2020 Christine Lemmer-Webber <cwebber@dustycloud.org> ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr> ;;; Copyright © 2015, 2016 David Thompson <davet@gnu.org> ;;; Copyright © 2015, 2016, 2017, 2019 Leo Famulari <leo@famulari.name> @@ -19,7 +19,7 @@ ;;; Copyright © 2015, 2016 Chris Marusich <cmmarusich@gmail.com> ;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org> ;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org> -;;; Copyright © 2016, 2018, 2019 Hartmut Goebel <h.goebel@crazy-compilers.com> +;;; Copyright © 2016, 2018, 2019, 2021 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; Copyright © 2016 Daniel Pimentel <d4n1@d4n1.org> ;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2016, 2017 Troy Sankey <sankeytms@gmail.com> @@ -29,7 +29,7 @@ ;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Marius Bakke <marius@gnu.org> ;;; Copyright © 2016, 2017, 2021 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2016, 2017, 2019 Alex Vong <alexvong1995@gmail.com> -;;; Copyright © 2016, 2017, 2018 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2016, 2017, 2018, 2021 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2016, 2017, 2018, 2020, 2021 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2016–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> @@ -39,10 +39,9 @@ ;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au> ;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org> -;;; Copyright © 2017, 2020 Roel Janssen <roel@gnu.org> +;;; Copyright © 2017, 2020, 2021 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017, 2018, 2019 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> -;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com> ;;; Copyright © 2017, 2019, 2021 Brendan Tildesley <mail@brendan.scot> ;;; Copyright © 2018 Ethan R. Jones <ethanrjones97@gmail.com ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com> @@ -53,7 +52,7 @@ ;;; Copyright © 2018, 2019, 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018, 2019 Clément Lassieur <clement@lassieur.org> -;;; Copyright © 2018, 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2018, 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com> ;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org> ;;; Copyright © 2015, 2018 Pjotr Prins <pjotr.guix@thebird.nl> @@ -62,22 +61,21 @@ ;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us> ;;; Copyright © 2019, 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2019, 2020 Alex Griffin <a@ajgrf.com> -;;; Copyright © 2019, 2020 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2019, 2020, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com> ;;; Copyright © 2019, 2020 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> -;;; Copyright © 2019, 2020 Tanguy Le Carrour <tanguy@bioneland.org> -;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2019, 2020, 2021 Tanguy Le Carrour <tanguy@bioneland.org> +;;; Copyright © 2019, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2020 sirgazil <sirgazil@zoho.com> ;;; Copyright © 2020 Sebastian Schott <sschott@mailbox.org> -;;; Copyright © 2020 Alexandros Theodotou <alex@zrythm.org> -;;; Copyright © 2020 Josh Marshall <joshua.r.marshall.1991@gmail.com> ;;; Copyright © 2020, 2021 Alexandros Theodotou <alex@zrythm.org> +;;; Copyright © 2020 Josh Marshall <joshua.r.marshall.1991@gmail.com> ;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org> ;;; Copyright © 2020 Alex ter Weele <alex.ter.weele@gmail.com> -;;; Copyright © 2020 Matthew Kraai <kraai@ftbfs.org> +;;; Copyright © 2020 Matthew James Kraai <kraai@ftbfs.org> ;;; Copyright © 2020 Ryan Prior <rprior@protonmail.com> ;;; Copyright © 2020 Josh Holland <josh@inv.alid.pw> ;;; Copyright © 2020 Yuval Kogman <nothingmuch@woobling.org> @@ -88,10 +86,10 @@ ;;; Copyright © 2020 Malte Frank Gerdes <malte.f.gerdes@gmail.com> ;;; Copyright © 2020 Joseph LaFreniere <joseph@lafreniere.xyz> ;;; Copyright © 2020 Tim Gesthuizen <tim.gesthuizen@yahoo.de> -;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki@gmail.com> +;;; Copyright © 2020, 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; Copyright © 2020 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; Copyright © 2020 Diego N. Barbato <dnbarbato@posteo.de> -;;; Copyright © 2020 Leo Prikler <leo.prikler@student.tugraz.at> +;;; Copyright © 2020 Liliana Marie Prikler <liliana.prikler@gmail.com> ;;; Copyright © 2019 Kristian Trandem <kristian@devup.no> ;;; Copyright © 2020, 2021 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2021 Morgan Smith <Morgan.J.Smith@outlook.com> @@ -99,6 +97,17 @@ ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2021 Ellis Kenyő <me@elken.dev> ;;; Copyright © 2021 LibreMiami <packaging-guix@libremiami.org> +;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> +;;; Copyright © 2021 Raghav Gururajan <rg@raghavgururajan.name> +;;; Copyright © 2021 jgart <jgart@dismail.de> +;;; Copyright © 2021 Danial Behzadi <dani.behzi@ubuntu.com> +;;; Copyright © 2021 Maxime Devos <maximedevos@telenet.be> +;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr> +;;; Copyright © 2021 Franck Pérignon <franck.perignon@univ-grenoble-alpes.fr> +;;; Copyright © 2021 Petr Hodina <phodina@protonmail.com> +;;; Copyright © 2021 Simon Streit <simon@netpanic.org> +;;; Copyright © 2021 Daniel Meißner <daniel.meissner-i4k@ruhr-uni-bochum.de> +;;; Copyright © 2021 Pradana Aumars <paumars@courrier.dev> ;;; ;;; This file is part of GNU Guix. ;;; @@ -171,6 +180,7 @@ #:use-module (gnu packages perl) #:use-module (gnu packages photo) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages protobuf) #:use-module (gnu packages python) #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) @@ -181,9 +191,11 @@ #:use-module (gnu packages qt) #:use-module (gnu packages rdf) #:use-module (gnu packages readline) + #:use-module (gnu packages regex) #:use-module (gnu packages sdl) - #:use-module (gnu packages search) #:use-module (gnu packages scanner) + #:use-module (gnu packages search) + #:use-module (gnu packages serialization) #:use-module (gnu packages shells) #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) @@ -217,6 +229,324 @@ #:use-module (srfi srfi-1) #:use-module (srfi srfi-26)) +(define-public python-ueberzug + (package + (name "python-ueberzug") + (version "18.1.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ueberzug" version)) + (sha256 + (base32 + "1hxd45dnwa9yv908acarr98n2drmar66wzq9z2qd3irj24srzr3w")))) + (build-system python-build-system) + (inputs + `(("libx11" ,libx11) + ("libxext" ,libxext))) + (propagated-inputs + `(("python-attrs" ,python-attrs) + ("python-docopt" ,python-docopt) + ("python-pillow" ,python-pillow) + ("python-xlib" ,python-xlib))) + (home-page "https://github.com/seebye/ueberzug") + (synopsis "Command line util to display images in combination with X11") + (description "Überzug is a command line util which allows to draw images on +terminals by using child windows. The advantages of using Überzug are: +@itemize +@item No race conditions as a new window is created to display images. +@item Expose events will be processed, so images will be redrawn on switch +workspaces. +@item Tmux support (excluding multi pane windows). +@item Terminals without the WINDOWID environment variable are supported. +@item Chars are used as position - and size unit. +@item No memory leak (/ unlimited cache). +@end itemize") + (license license:gpl3+))) + +(define-public python-fire + (package + (name "python-fire") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fire" version)) + (sha256 + (base32 + "0qka44n88y3qcj7xz0k0f3qb4phcg4z0wvd4jcii9lcr6rvbiqn5")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest", python-pytest))) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (inputs + `(("python-six", python-six) + ("python-termcolor", python-termcolor))) + (synopsis "Library for automatically generating command line interfaces") + (description + "Fire is a library for automatically generating command line interfaces +from absolutely any Python object. The following are the advantages: +@itemize +@item A simple way to create a CLI in Python. +@item A helpful tool for developing and debugging Python code. +@item Helps with exploring existing code or turning other people's code into a +command line interface. +@item Makes transitioning between Bash and Python easier. +@item Makes using a Python REPL easier by setting up the REPL with the modules +and variables you'll need already imported and created. +@end itemize") + (home-page "https://github.com/google/python-fire") + (license license:asl2.0))) + +(define-public python-twodict + (package + (name "python-twodict") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "twodict" version)) + (sha256 + (base32 "0ifv7dv18jn2lg0a3l6zdlvmmlda2ivixfjbsda58a2ay6kxznr0")))) + (build-system python-build-system) + (home-page "https://github.com/MrS0m30n3/twodict") + (synopsis "Two way ordered dictionary for Python") + (description "TwoDict is a custom dictionary in which you can get the +key:value relationship but you can also get the value:key relationship. It also +remembers the order in which the items were inserted and supports almost all the +features of the Python's built-in dict.") + (license license:unlicense))) + +(define-public python2-twodict + (package + (inherit python-twodict) + (name "python2-twodict") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "twodict" version)) + (sha256 + (base32 "0ifv7dv18jn2lg0a3l6zdlvmmlda2ivixfjbsda58a2ay6kxznr0")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)))) + +(define-public python-argopt + (package + (name "python-argopt") + (version "0.7.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "argopt" version)) + (sha256 + (base32 + "0ybs7kkp0cpl8zn1lvf7481xhssg1bbhh5la2cjzdm5yibashyxa")))) + (build-system python-build-system) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-nose" ,python-nose) + ("python-setuptools" ,python-setuptools) ; Won't build without this. + ("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-toml" ,python-toml) + ("python-flake8" ,python-flake8))) + (home-page "https://github.com/casperdcl/argopt") + (synopsis "Generate a command-line interface from a docstring") + (description "This package provides tools to define a command line interface +from a docstring rather than the other way around.") + (license license:mpl2.0))) + +(define-public python-cachetools + (package + (name "python-cachetools") + (version "4.2.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "cachetools" version)) + (sha256 + (base32 + "1zqc098gk6y614lxwqd9z2gm8lldgvrpid133pnlm4m048gfvdb1")))) + (build-system python-build-system) + (home-page "https://github.com/tkem/cachetools/") + (synopsis "Extensible memoizing collections and decorators") + (description "This module provides various memoizing collections and +decorators, including variants of the Python standard library's +@code{lru_cache} function decorator.") + (license license:expat))) + +(define-public python-colorful + (package + (name "python-colorful") + (version "0.5.4") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "colorful" version)) + (sha256 + (base32 "1sh7g2cn1fyz2hzmzs933razdxi2bna9i1lxa790r9pdwba8m146")))) + (build-system python-build-system) + ;; FIXME: tests cannot be computed: + ;; "Can't perform this operation for unregistered loader type" + (arguments + `(#:tests? #f)) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-flake8" ,python-flake8) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-colorama" ,python-colorama))) + (home-page "http://github.com/timofurrer/colorful") + (synopsis "Terminal string styling") + (description "Colorful provides an array of text styles, that can be used +as functions or string constants to form colored terminal output.") + (license license:expat))) + +(define-public python-yaspin + (package + (name "python-yaspin") + (version "1.5.0") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "yaspin" version)) + (sha256 + (base32 "1iirah0kydrdp505qnjj6gi54avcr7z0hbkfx9vmh8myr30rpz6q")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/pavdmyt/yaspin") + (synopsis "Yet Another Terminal Spinner") + (description "Yaspin provides a terminal spinner to indicate the progress +during long operations.") + (license license:expat))) + +(define-public python-lunr + (package + (name "python-lunr") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "lunr" version)) + (sha256 + (base32 "106akalywfmnypzkdrhgz4n4740a8xayspybsw59kq06vz8i2qrc")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-nltk" ,python-nltk-3.4))) + (home-page + "https://github.com/yeraydiazdiaz/lunr.py") + (synopsis "Full-text search library") + (description "This package provides python library for full-text search. +It indexes documents and provides a search interface for retrieving documents +that best match text queries.") + (license license:expat))) + +(define-public python-mkdocs + (package + (name "python-mkdocs") + (version "1.1.2") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "mkdocs" version)) + (sha256 + (base32 "0fgv5zawpyyv0vd4j5y8m4h058lh9jkwfcm0xy4pg7dr09a1xdph")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Requirements refer to a specific version of dependencies, + ;; which are too old. So we patch to refer to any later version. + (add-after 'unpack 'patch-requirements + (lambda _ + (substitute* "setup.py" + (("==") ">="))))))) + (propagated-inputs + `(("python-click" ,python-click) + ("python-jinja2" ,python-jinja2) + ("python-livereload" ,python-livereload) + ("python-lunr" ,python-lunr) + ("python-markdown" ,python-markdown) + ("python-pyyaml" ,python-pyyaml) + ("python-tornado" ,python-tornado))) + (home-page "https://www.mkdocs.org") + (synopsis "Project documentation with Markdown") + (description "MkDocs is a static site generator geared towards building +project documentation. Documentation source files are written in Markdown, and +configured with a single YAML configuration file.") + (license license:bsd-3))) + +(define-public python-pymdown-extensions + (package + (name "python-pymdown-extensions") + (version "8.1.1") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "pymdown-extensions" version)) + (sha256 + (base32 "0d8pdndrl1kj105lq7r6kw2dnhcvll6h2qs07w71mcpi7gx728v3")))) + (build-system python-build-system) + ;; FIXME: "AssertionError: False is not true" + (arguments + `(#:tests? #f)) + (propagated-inputs + `(("python-markdown" ,python-markdown))) + (home-page "https://github.com/facelessuser/pymdown-extensions") + (synopsis "Extension pack for Python Markdown") + (description "PyMdown Extensions is a collection of extensions for Python +Markdown. All extensions are found under the module namespace of pymdownx.") + (license license:expat))) + +(define-public python-mkdocs-material + (package + (name "python-mkdocs-material") + (version "7.1.3") + (source + (origin + (method url-fetch) + (uri + (pypi-uri "mkdocs-material" version)) + (sha256 + (base32 "0ci9xiasq9nfn09v11m7p49vzazdbgslw7rpzjd6y3hsmn9vljz3")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Requirement mkdocs-material-extensions + ;; in-turn requires mkdocs-material. This causes + ;; circular dependency, so we remove this requirement. + (add-after 'unpack 'patch-requirements + (lambda _ + (substitute* "requirements.txt" + (("mkdocs-material-extensions.*$") ""))))))) + (propagated-inputs + `(("python-markdown" ,python-markdown) + ("python-mkdocs" ,python-mkdocs) + ("python-pygments" ,python-pygments) + ("python-pymdown-extensions" + ,python-pymdown-extensions))) + (home-page "https://squidfunk.github.io/mkdocs-material/") + (synopsis "Material Design theme for MkDocs") + (description "This package provides a theme plugin for the static site +generator MkDocs.") + (license license:expat))) + (define-public python-slixmpp (package (name "python-slixmpp") @@ -358,13 +688,13 @@ with Python's logging module that outputs records using terminal colors.") (define-public python-pyprind (package (name "python-pyprind") - (version "2.11.2") + (version "2.11.3") (source (origin (method url-fetch) (uri (pypi-uri "PyPrind" version)) (sha256 (base32 - "0xg6m5hr33h9bdlrr42kc58jm2m87a9zsagy7n2m4n407d2snv64")))) + "1gscnlvj37m421ch3akm3kddxqkrgbg5zrpwy2ky1j59w6vclzg3")))) (build-system python-build-system) (propagated-inputs `(("python-psutil" ,python-psutil))) @@ -534,14 +864,14 @@ to CommonMark.") "/lib/libmediainfo.so.0"))) #t)) (replace 'check - (lambda _ - ;; Extend PYTHONPATH so the built package will be found. - (setenv "PYTHONPATH" - (string-append (getcwd) "/build/lib:" - (getenv "PYTHONPATH"))) - ;; Skip the only failing test "test_parse_url" - (invoke "pytest" "-vv" "-k" "not test_parse_url") - #t))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Extend PYTHONPATH so the built package will be found. + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + ;; Skip the only failing test "test_parse_url" + (invoke "pytest" "-vv" "-k" "not test_parse_url"))))))) (home-page "https://github.com/sbraz/pymediainfo") (synopsis @@ -693,9 +1023,6 @@ module and then similar looking characters are removed.") and function call return values in a human-readable way.") (license license:asl2.0))) -(define-public python2-shapely - (package-with-python2 python-shapely)) - (define-public python-clyent (package (name "python-clyent") @@ -912,9 +1239,6 @@ NetCDF files can also be read and modified. Python-HDF4 is a fork of @url{http://hdfeos.org/software/pyhdf.php,pyhdf}.") (license license:expat))) -(define-public python2-hdf4 - (package-with-python2 python-hdf4)) - (define-public python-h5py (package (name "python-h5py") @@ -965,6 +1289,39 @@ concepts.") (define-public python2-h5py (package-with-python2 python-h5py)) +(define-public python-pyls-black + (package + (name "python-pyls-black") + (version "0.4.6") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/rupert/pyls-black/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0cjf0mjn156qp0x6md6mncs31hdpzfim769c2lixaczhyzwywqnj")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest")) + (propagated-inputs + `(("python-black" ,python-black) + ("python-language-server" + ,python-language-server) + ("python-toml" ,python-toml))) + (native-inputs + `(("python-flake8" ,python-flake8) + ("python-isort" ,python-isort) + ("python-mypy" ,python-mypy) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/rupert/pyls-black") + (synopsis "Black plugin for the Python Language Server") + (description "Black plugin for the Python Language Server.") + (license license:expat))) + (define-public python-sh (package (name "python-sh") @@ -1060,6 +1417,39 @@ to users of that module.") ;; by the Expat license. (license (list license:isc license:expat)))) +(define-public python-ncclient + (package + (name "python-ncclient") + (version "0.6.12") + (source + (origin + (method git-fetch) ;no tests in PyPI release + (uri (git-reference + (url "https://github.com/ncclient/ncclient") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0cb568z5syg6hh0dv813bw7s1mjy7ga5xzxbm9naf4zz2qfdg4js")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-lxml" ,python-lxml) + ("python-paramiko" ,python-paramiko))) + (home-page "https://github.com/ncclient/ncclient") + (synopsis "Python library for NETCONF clients") + (description "@code{ncclient} is a Python library that facilitates +client-side scripting and application development around the NETCONF +protocol.") + (license license:asl2.0))) + (define-public python-license-expression (package (name "python-license-expression") @@ -1105,6 +1495,30 @@ conventions and aliases in the same expression.") API for locking files.") (license license:expat))) +(define-public python-fb-re2 + (package + (name "python-fb-re2") + (version "1.0.7") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/facebook/pyre2") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0snprxdnh3m45r3b0az4v0l28h90ycmfbybzla6xg1qviwv9w1ak")))) + (build-system python-build-system) + (inputs + `(("re2" ,re2))) + (home-page "https://github.com/facebook/pyre2") + (synopsis "Python wrapper for RE2") + (description "This package provides a Python extension that wraps Google's +RE2 regular expression library. It implements many of the features of +Python's built-in @code{re} module with compatible interfaces.") + (license license:bsd-3))) + (define-public python-filelock (package (name "python-filelock") @@ -1275,6 +1689,34 @@ Python 3 support.") license:asl2.0 ; packaging is dual ASL2/BSD-2 license:bsd-2)))) +(define-public python-setuptools-declarative-requirements + (package + (name "python-setuptools-declarative-requirements") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri + "setuptools-declarative-requirements" + version)) + (sha256 + (base32 + "1l8zmcnp9h8sp8hsw7b81djaa1a9yig0y7i4phh5pihqz1gdn7yi")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-toml" ,python-toml) + ("python-wheel" ,python-wheel))) + (home-page + "https://github.com/s0undt3ch/setuptools-declarative-requirements") + (synopsis "File support for setuptools declarative setup.cfg") + (description + "This package provides file support for setuptools declarative +@code{setup.cfg}.") + (license license:asl2.0))) + ;; The setuptools provided by Python 3.7.4 is too new for Tensorflow. (define-public python-setuptools-for-tensorflow (hidden-package @@ -1896,6 +2338,25 @@ The event dispatch is implicit, which means you can easily use @code{Eventlet} from the Python interpreter, or as a small part of a larger application.") (license license:expat))) +(define-public python-sinfo + (package + (name "python-sinfo") + (version "0.3.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "sinfo" version)) + (sha256 + (base32 + "0kdsp883mx0lfyykv0p12bvs203kdm3skb8bw5wf2pc7kb393sl1")))) + (build-system python-build-system) + (propagated-inputs + `(("python-stdlib-list" ,python-stdlib-list))) + (home-page "https://gitlab.com/joelostblom/session_info") + (synopsis "Output module version information loaded in a Python session") + (description "This package outputs version information for modules loaded +in the current session, Python, and the OS.") + (license license:bsd-3))) + (define-public python-six (package (name "python-six") @@ -1969,7 +2430,7 @@ human-friendly syntax.") (define-public python-scour (package (name "python-scour") - (version "038.1") + (version "0.38.2") (source (origin (method git-fetch) @@ -1980,7 +2441,7 @@ human-friendly syntax.") (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0rgiypb9ig8x4rl3hfzpy7kwnx1q3064nvlrv4fk0dnp84girn0v")))) + (base32 "0mmfvx4wqp8gkpv0kbih89zfs9njvmd3v4dxfqii62xddpxq0f1k")))) (propagated-inputs `(("python-six" ,python-six))) (build-system python-build-system) @@ -2509,14 +2970,14 @@ matching them against a list of media-ranges.") (define-public python-miniboa (package (name "python-miniboa") - (version "1.0.7") + (version "1.0.8") (source (origin (method url-fetch) (uri (pypi-uri "miniboa" version)) (sha256 (base32 - "09jh3pn4rh7kh7jayanf8jzy6gp03791b5a193w6148cf3i6k9m3")))) + "002c1aki9hsrwj5plrwdrf3sk8rn95fqylqyjx2arrjfpsih4dgs")))) (build-system python-build-system) (home-page "https://github.com/shmup/miniboa") (synopsis "Simple, single-threaded Telnet server") @@ -2612,14 +3073,14 @@ code introspection, and logging.") (define-public python-py-next (package (inherit python-py) - (version "1.9.0") + (version "1.10.0") (source (origin (method url-fetch) (uri (pypi-uri "py" version)) (sha256 (base32 - "0hpk0gzd4v1pcnq7zinwg5n219czi23qghcswykqskkbwly8i9lw")))))) + "1lqvkqk3b440g9z82gqbzlzas84wrm6ir8kplzhzavmn2pd1pf11")))))) (define-public python2-py (package-with-python2 python-py)) @@ -2950,16 +3411,7 @@ compare, diff, and patch JSON and JSON-like structures in Python.") (synopsis "Implementation of JSON Schema for Python") (description "Jsonschema is an implementation of JSON Schema for Python.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-jsonschema)))))) - -(define-public python2-jsonschema - (let ((jsonschema (package-with-python2 - (strip-python2-variant python-jsonschema)))) - (package/inherit jsonschema - (propagated-inputs - `(("python2-functools32" ,python2-functools32) - ,@(package-propagated-inputs jsonschema)))))) + (license license:expat))) (define-public python-schema (package @@ -3029,6 +3481,25 @@ cutting and pasting that code over and over.") (define-public python2-kitchen (package-with-python2 python-kitchen)) +(define-public python-roman + (package + (name "python-roman") + (version "3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "roman" version)) + (sha256 + (base32 + "0gyp2bmw47jgpm8j64gydzqq838bgxz5gh6cm57lxlr7p26sqiic")))) + (build-system python-build-system) + (home-page "https://github.com/zopefoundation/roman") + (synopsis "Integer to Roman numerals converter") + (description + "This package provides a small helper library to convert Arabic Numbers +to Roman Numerals.") + (license license:psfl))) + (define-public python-unidecode (package (name "python-unidecode") @@ -3128,32 +3599,6 @@ memory usage and transliteration quality.") (define-public python2-pyjwt (package-with-python2 python-pyjwt)) -(define-public python-pykka - (package - (name "python-pykka") - (version "1.2.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "Pykka" version)) - (sha256 - (base32 - "049w3r0mdnnw7xv19jiq7rvls9k7xs73x05b4qs5d6z4vvmgyiz8")))) - (build-system python-build-system) - (native-inputs - `(("python-mock" ,python-mock) - ("python-nose" ,python-nose) - ("python-gevent" ,python-gevent) - ("python-eventlet" ,python-eventlet))) - (home-page "https://www.pykka.org/") - (synopsis "Pykka is a Python implementation of the actor model") - (description - "Pykka is a Python implementation of the actor model. -The actor model introduces some simple rules to control the sharing -of state and cooperation between execution units, which makes it -easier to build concurrent applications.") - (license license:asl2.0))) - (define-public python-pymsgbox (package (name "python-pymsgbox") @@ -3249,14 +3694,14 @@ environments and back.") (define-public python-pyyaml (package (name "python-pyyaml") - (version "5.3.1") + (version "5.4.1") (source (origin (method url-fetch) (uri (pypi-uri "PyYAML" version)) (sha256 (base32 - "0pb4zvkfxfijkpgd1b86xjsqql97ssf1knbd1v53wkg1qm9cgsmq")))) + "0pm440pmpvgv5rbbnm8hk4qga5a292kvlm1bh3x2nwr8pb5p8xv0")))) (build-system python-build-system) (inputs `(("libyaml" ,libyaml))) @@ -4187,7 +4632,7 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") (define-public python-pydantic (package (name "python-pydantic") - (version "1.6.1") + (version "1.8.2") (source (origin (method git-fetch) @@ -4196,24 +4641,39 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1380s9k77g6q15by9fkxndczjk89q6xpz09jdrqip535xws2z3j8")))) + (base32 "06162dss6mvi7wiy2lzxwvzajwxgy8b2fyym7qipaj7zibcqalq2")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases - ;; Reported upstream: - ;; <https://github.com/samuelcolvin/pydantic/issues/1580>. - ;; Disable the faulty test as the fix is unclear. (add-before 'check 'disable-test (lambda _ + ;; Reported upstream: + ;; <https://github.com/samuelcolvin/pydantic/issues/1580>. + ;; Disable the faulty test as the fix is unclear. (substitute* "tests/test_validators.py" (("test_assert_raises_validation_error") "_test_assert_raises_validation_error")) - #t)) + + ;; These fail because of <https://bugs.python.org/issue40398>. + ;; Remove after Python has been upgraded to >= 3.9. + (substitute* "tests/test_generics.py" + (("assert replace_types\\(Callable, \\{T: int\\}\\) == Callable") + "")) + (substitute* "tests/test_schema.py" + (("test_unenforced_constraints_schema") + "_test_unenforced_constraints_schema")) + + ;; Disable tests for the Hypothesis plugin because it is tricky + ;; to configure in the build container. + (delete-file "tests/test_hypothesis_plugin.py"))) (replace 'check - (lambda _ (invoke "pytest" "-vv" "tests")))))) + (lambda _ (invoke "pytest" "-vv")))))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest) + ("python-pytest-mock" ,python-pytest-mock))) + (propagated-inputs + `(("python-typing-extensions" ,python-typing-extensions))) (home-page "https://github.com/samuelcolvin/pydantic") (synopsis "Python data validation and settings management") (description @@ -4256,10 +4716,27 @@ Server (PLS).") (base32 "1c0pnk2aibfhfaanrs0a5gkabkvz81gj20z7r0152b7fcx5ci14r")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-deps + (lambda _ + (substitute* "setup.py" (("pycodestyle>=2.6.0,<2.7.0") + "pycodestyle")) + (substitute* "setup.py" (("pyflakes>=2.2.0,<2.3.0") "pyflakes")) + #t)) + (add-before 'check 'set-HOME + (lambda _ (setenv "HOME" "/tmp") #t)) + (replace 'check + (lambda _ + ;; Disable failing test. + (invoke "python" "-m" "pytest" "-k" + "not test_pyqt_completion")))))) (propagated-inputs `(("python-autopep8" ,python-autopep8) ("python-configparser" ,python-configparser) ("python-pydocstyle" ,python-pydocstyle) + ("python-flake8" ,python-flake8) ("python-future" ,python-future) ("python-jedi" ,python-jedi) ("python-jsonrpc-server" ,python-jsonrpc-server) @@ -4563,29 +5040,6 @@ writing C extensions for Python as easy as Python itself.") "")) #t))))))))) -;; The RPython toolchain currently does not support Python 3. -(define-public python2-rpython - (package - (name "python2-rpython") - (version "0.2.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "rpython" version)) - (sha256 - (base32 - "02z9cvxf0y41dcvwnvf2zn0albhhw1drvjjbq27m6i1piw1k6fc0")))) - (build-system python-build-system) - (arguments `(#:python ,python-2)) - (native-inputs - `(("python2-pytest" ,python2-pytest))) ; needed for running tests - (home-page "https://rpython.readthedocs.org") - (synopsis "Framework for implementing interpreters and virtual machines") - (description "RPython is a translation and support framework for -producing implementations of dynamic languages, emphasizing a clean separation -between language specification and implementation aspects.") - (license license:expat))) - ;; NOTE: when upgrading numpy please make sure that python-pandas and ;; python-scipy still build, as these three packages are often used together. (define-public python-numpy @@ -4603,8 +5057,7 @@ between language specification and implementation aspects.") "1ak9dmjja0q90a7fsxli51ypcwssh8c4pb6f8wkrsnf2xgdk6dy9")))) (build-system python-build-system) (inputs - `(("openblas" ,openblas) - ("lapack" ,lapack))) + `(("openblas" ,openblas))) (native-inputs `(("python-cython" ,python-cython) ("python-pytest" ,python-pytest) @@ -4672,8 +5125,8 @@ capabilities.") (define-public python2-numpy (let ((numpy (package-with-python2 (strip-python2-variant python-numpy)))) - (package/inherit - numpy + (package + (inherit numpy) (version "1.16.5") (source (origin (method url-fetch) @@ -4775,6 +5228,51 @@ objects.") (define-public python2-colormath (package-with-python2 python-colormath)) +(define-public python-sparse + (package + (name "python-sparse") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sparse" version)) + (sha256 + (base32 + "05lmzckv69cvxavhdr36k803bgr5dl04cppglid1l880xswc759c")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest" "-v"))))))) + (propagated-inputs + `(("python-numba" ,python-numba) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy))) + (native-inputs + `(("python-dask" ,python-dask) + ("python-pytest" ,python-pytest) + ("python-pytest-black" ,python-pytest-black) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://github.com/pydata/sparse/") + (synopsis "Library for multi-dimensional sparse arrays") + (description + "This package implements sparse arrays of arbitrary dimension on top of +@code{numpy} and @code{scipy.sparse}. Sparse array is a matrix in which most +of the elements are zero. @code{python-sparse} generalizes the +@code{scipy.sparse.coo_matrix} and @code{scipy.sparse.dok_matrix} layouts, but +extends beyond just rows and columns to an arbitrary number of dimensions. +Additionally, this project maintains compatibility with the +@code{numpy.ndarray} interface rather than the @code{numpy.matrix} interface +used in @code{scipy.sparse}. These differences make this project useful in +certain situations where @code{scipy.sparse} matrices are not well suited, but +it should not be considered a full replacement. It lacks layouts that are not +easily generalized like @dfn{compressed sparse row/column}(CSR/CSC) and +depends on @code{scipy.sparse} for some computations.") + (license license:bsd-3))) + (define-public python-spectra (package (name "python-spectra") @@ -4815,6 +5313,42 @@ color scales, and color space conversion easy. It has support for: (define-public python2-spectra (package-with-python2 python-spectra)) +(define-public python-pyspnego + (package + (name "python-pyspnego") + (version "0.1.6") + (source + (origin + (method git-fetch) ;no tests in PyPI release + (uri (git-reference + (url "https://github.com/jborean93/pyspnego") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0pfh2x0539f0k2qi2pbjm64b2fqp64c63xxpinvg1yfaw915kgpb")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-mock" ,python-pytest-mock))) + (propagated-inputs + `(("python-cryptography" ,python-cryptography) + ("python-gssapi" ,python-gssapi) + ("python-ruamel.yaml" ,python-ruamel.yaml))) + (home-page "https://github.com/jborean93/pyspnego") + (synopsis "Python SPNEGO library") + (description "The @code{pyspnego} Python library handles Negotiate, NTLM, +Kerberos (SPNEGO) and CredSSP authentication. It also includes a packet +parser that can be used to decode raw NTLM/SPNEGO/Kerberos tokens into a human +readable format.") + (license license:expat))) + (define-public python-numpy-documentation (package (name "python-numpy-documentation") @@ -4830,8 +5364,8 @@ color scales, and color space conversion easy. It has support for: ("texlive" ,(texlive-union (list texlive-fonts-cm-super texlive-fonts-ec texlive-generic-ifxetex - texlive-generic-pdftex - texlive-amsfonts + texlive-pdftex + texlive-amsfonts/patched texlive-latex-capt-of texlive-latex-cmap texlive-latex-environ @@ -4927,23 +5461,16 @@ color scales, and color space conversion easy. It has support for: (description (package-description python-numpy)) (license (package-license python-numpy)))) -(define-public python2-numpy-documentation - (let ((numpy-documentation (package-with-python2 python-numpy-documentation))) - (package - (inherit numpy-documentation) - (native-inputs `(("python2-functools32" ,python2-functools32) - ,@(package-native-inputs numpy-documentation)))))) - (define-public python-pygit2 (package (name "python-pygit2") - (version "1.4.0") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "pygit2" version)) (sha256 - (base32 "1j71iskvirkm8jzfmwdm79v69878m9iix8a8cn4xidgr3nmkisyb")))) + (base32 "0qjd5aqpmla64da4pb47vdnrmnqdbn7248a4fzs7f5q1ax7fmb3s")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; tests don't run correctly in our environment @@ -4980,17 +5507,118 @@ algorithm. Patiencediff provides a good balance of performance, nice output for humans, and implementation simplicity.") (license license:gpl2))) +(define-public python-wmctrl + (package + (name "python-wmctrl") + (version "0.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "wmctrl" version)) + (sha256 + (base32 + "1q0l1sqnj5wma87k3dsgmsyph464syjc6fl8qcpa41nan1rgzjv6")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'patch-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((wmctrl (assoc-ref inputs "wmctrl"))) + (substitute* "wmctrl.py" + (("'wmctrl") + (string-append "'" wmctrl "/bin/wmctrl"))))))))) + (inputs `(("wmctrl" ,wmctrl))) + (home-page "https://github.com/antocuni/wmctrl") + (synopsis "Tool to programmatically control Xorg windows") + (description "This package provides a library for programmatically +controlling Xorg windows using Python. The library relies on the +@command{wmctrl} to do so.") + (license license:expat))) + +(define-public python-fancycompleter + (package + (name "python-fancycompleter") + (version "0.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fancycompleter" version)) + (sha256 + (base32 "0wkj4h01pxa8prv59zl09a0i3w26k835bfpjgvyvsai4mswgxq09")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-setup.py + (lambda _ + (substitute* "setup.py" + ((".*setupmeta.*") + "") + (("versioning=.*") + (string-append "version='" ,version "',")) + ((".*pyrepl.*") ;broken on Python 3 + ""))))))) + (home-page "https://github.com/pdbpp/fancycompleter") + (synopsis "TAB completion library for Python") + (description "@code{fancycompleter} is a module that adds TAB completion +to the interactive prompt. It is an extension of the @code{rlcompleter} +module from the standard Python library.") + (license license:bsd-3))) + +(define-public python-pdbpp + (package + (name "python-pdbpp") + (version "0.10.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pdbpp" version)) + (sha256 + (base32 + "1xb9yvi30rb1cdpvfdk2kg79vh3anvkz91r8bwvfp3iqv97kzr6r")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" + "-k" + (string-append + ;; These tests seem to require a real TTY. + "not interaction_restores_previous_sigint_handler " + "and not python_m_pdb_uses_pdbpp")))))))) + (propagated-inputs + `(("python-fancycompleter" ,python-fancycompleter) + ("python-pygments" ,python-pygments) + ("python-wmctrl" ,python-wmctrl))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) + (home-page "https://github.com/pdbpp/pdbpp") + (synopsis "Drop-in replacement for pdb") + (description "Pdb++ is a drop-in replacement for @code{pdb}. It +includes the following improvements compared to @code{pdb}: +@itemize +@item auto-completion +@item syntax highlighting of code listings +@item sticky mode +@item new commands to be used from the interactive (Pdb++) prompt +@item smart command parsing +@item additional convenience functions in the @code{pdb} module. +@end itemize") + (license license:bsd-3))) + (define-public python-pdftotext (package (name "python-pdftotext") - (version "2.1.5") + (version "2.1.6") (source (origin (method url-fetch) (uri (pypi-uri "pdftotext" version)) (sha256 - (base32 - "19la1cw1hmkcr8big04gm2dd5fw0y0z97g930aiy29s1gaqbiblq")))) + (base32 "1555wbgr5spj8xflrs4mwsrdmba2f9s72nk50xzqk9ghxaxdvy6a")))) (build-system python-build-system) (inputs `(("poppler" ,poppler))) @@ -4999,6 +5627,83 @@ humans, and implementation simplicity.") (description "Pdftotext is a Python library of PDF text extraction.") (license license:expat))) +(define-public python-pluginbase + (package + (name "python-pluginbase") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pluginbase" version)) + (sha256 + (base32 + "11z2vvbp13828y0x3w39f29p9r9xcix7h7c4fff2w8yfiylk6v7z")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "make" "test"))))))) + (native-inputs `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/mitsuhiko/pluginbase") + (synopsis "Simple but flexible plugin system for Python") + (description "PluginBase is a library useful in the development of +flexible plugin systems in Python.") + (license license:bsd-3))) + +(define-public python-node-semver + (package + (name "python-node-semver") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "node-semver" version)) + (sha256 + (base32 + "000ypfns5x72b41w5f9pk6k3jnr35scliqfbvmilyvv0178005i8")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/podhmo/python-node-semver") + (synopsis "Python port of node-semver") + (description "This module provides a Python version of node-semver, a +semantic version parser for Node.js.") + (license license:expat))) + +(define-public python-patch-ng + (package + (name "python-patch-ng") + (version "1.17.4") + (source + (origin + (method git-fetch) ;no tests in PyPI archive + (uri (git-reference + (url "https://github.com/conan-io/python-patch-ng") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0qxn4ss2s54qy87xrpcybz26kp2fwlaq41x4k9jcmp6d7p0w569m")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "tests/run_tests.py" "-v"))))))) + (home-page "https://github.com/conan-io/python-patch-ng") + (synopsis "Python library to parse and apply unified diffs") + (description "Patch NG (New Generation) is a command and Python library to +parse and apply unified diffs. It has features such as: +@itemize +@item automatic correction of common patch formatting corruption +@item patch format detection (SVN, Hg, Git) +@item nice diffstat histogram. +@end itemize") + (license license:expat))) + (define-public python-pyparsing (package (name "python-pyparsing") @@ -5089,14 +5794,14 @@ that client code uses to construct the grammar directly in Python code.") (define-public python-numexpr (package (name "python-numexpr") - (version "2.6.5") + (version "2.7.3") (source (origin (method url-fetch) (uri (pypi-uri "numexpr" version)) (sha256 (base32 - "1frnbcwmsi312154x274xl28xazr1k8vjby83fwyla2n10a81bgq")))) + "09d8yfsx33ddwfkpn8805w2mxnn4cvf47yc66g4azldpz4lnaqa3")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; no tests included (propagated-inputs @@ -5178,6 +5883,45 @@ convert between colorspaces like sRGB, XYZ, CIEL*a*b*, CIECAM02, CAM02-UCS, etc. (define-public python2-colorspacious (package-with-python2 python-colorspacious)) +(define-public python-proto-matcher + (package + (name "python-proto-matcher") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "proto_matcher" version)) + (sha256 + (base32 "1644x0hrl398ji3281n44ymfgc3cspzfagjckhqjn4nja5nlikxg")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ;no test suite + (propagated-inputs + `(("python-protobuf" ,python-protobuf) + ("python-pyhamcrest" ,python-pyhamcrest))) + (home-page "https://github.com/dayfine/proto-matcher") + (synopsis "PyHamcrest test matchers for protocol buffers") + (description "This package provides the following PyHamcrest test +matchers, that enable matching a protocol buffer message: +@table @code +@item equals_proto +Test the argument equals the given protobuf message. +@item approximately +Test the argument equals the given protobuf message, while comparing any float +field using approximation. +@item ignoring_field_paths +Test the argument equals the given protobuf message, while ignoring those +fields specified in the field paths. +@item ignoring_repeated_field_ordering +Test the argument equals the given protobuf message, ignoring the ordering of +any repeated field. +@item partially +Test the argument partially equals the given protobuf message, i.e. if a field +is in the argument but not in the expected message, it's ignored in the +comparison. +@end table") + (license license:asl2.0))) + (define-public python-matplotlib (package (name "python-matplotlib") @@ -5266,8 +6010,11 @@ convert between colorspaces like sRGB, XYZ, CIEL*a*b*, CIECAM02, CAM02-UCS, etc. #t)) (add-before 'install 'install-jquery-ui (lambda* (#:key outputs inputs #:allow-other-keys) - (let ((dir (string-append (assoc-ref outputs "out") - "/lib/python3.7/site-packages/matplotlib/backends/web_backend/"))) + (let* ((python-version (python-version + (assoc-ref inputs "python"))) + (dir (string-append (assoc-ref outputs "out") + "/lib/python" python-version "/site-packages" + "/matplotlib/backends/web_backend/"))) (mkdir-p dir) (invoke "unzip" (assoc-ref inputs "jquery-ui") @@ -5369,7 +6116,7 @@ toolkits.") ("python-ipykernel" ,python-ipykernel) ("python-mock" ,python-mock) ("graphviz" ,graphviz) - ("texlive" ,(texlive-union (list texlive-amsfonts + ("texlive" ,(texlive-union (list texlive-amsfonts/patched texlive-latex-amsmath texlive-latex-enumitem texlive-latex-expdlist @@ -5378,7 +6125,7 @@ toolkits.") texlive-latex-type1cm texlive-latex-ucs - texlive-generic-pdftex + texlive-pdftex texlive-fonts-ec texlive-fonts-adobe-times @@ -5509,6 +6256,28 @@ operators such as union, intersection, and difference.") (define-public python2-pysnptools (package-with-python2 python-pysnptools)) +(define-public python-pykdtree + (package + (name "python-pykdtree") + (version "1.3.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pykdtree" version)) + (sha256 + (base32 "0p8n2ljdacfixkiw092974dmhy4s1c0h032ii1z9kwi9h5h5rgmy")))) + (build-system python-build-system) + (native-inputs + `(("python-nose" ,python-nose))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (home-page "https://github.com/storpipfugl/pykdtree") + (synopsis "Fast kd-tree implementation with OpenMP-enabled queries") + (description + "@code{pykdtree} is a kd-tree implementation for fast nearest neighbour +search in Python.") + (license license:lgpl3+))) + (define-public python-wurlitzer (package (name "python-wurlitzer") @@ -5621,6 +6390,17 @@ Python code against some of the style conventions in (define-public python2-pycodestyle (package-with-python2 python-pycodestyle)) +(define-public python-pycodestyle-2.6 + (package + (inherit python-pycodestyle) + (version "2.6.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pycodestyle" version)) + (sha256 + (base32 + "0bhr6ia0hmgx3nhgibc9pmkzhlh1zcqk707i5fbxgs702ll7v2n5")))))) + (define-public python-multidict (package (name "python-multidict") @@ -5855,13 +6635,13 @@ the OleFileIO module from PIL, the Python Image Library.") (define-public python-pikepdf (package (name "python-pikepdf") - (version "2.10.0") + (version "2.16.1") (source (origin (method url-fetch) (uri (pypi-uri "pikepdf" version)) (sha256 - (base32 "09wfj1hjvj3r9gv7ywrqd7h3d0bz64bvils8sm3ghj90jhalb03s")))) + (base32 "1phdpi9cm2pbvgcxqvwr8ck327sxhdw4dnxmzhrbf7hzydmgykg2")))) (build-system python-build-system) (arguments `(#:tests? #false)) ;require python-xmp-toolkit @@ -6001,17 +6781,99 @@ a general image processing tool.") (description "This package is a fork of Pillow which adds support for SIMD parallelism."))) +(define-public python-imagecodecs + (package + (name "python-imagecodecs") + (version "2021.3.31") + (source + (origin + (method url-fetch) + (uri (pypi-uri "imagecodecs" version)) + (sha256 + (base32 + "0q7pslb6wd56vbcq2mdxwsiha32mxjr7mgqqfbq5w42q601p9pi0")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Unbundle 3rd party modules. + (delete-file-recursively "3rdparty") + ;; Delete pre-generated Cython files. + (for-each delete-file (find-files "imagecodecs" "_.*\\.c$")) + #t)))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Tests are disabled, because dependencies are missing. + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'create-configuration + (lambda* (#:key inputs #:allow-other-keys) + ;; By default everything is enabled. We can selectively disable + ;; extensions (and thus dependencies) by deleting them from the + ;; EXTENSIONS dictionary. This is upstream’s preferred way. + (call-with-output-file "imagecodecs_distributor_setup.py" + (lambda (port) + (format port "\ +def customize_build(EXTENSIONS, OPTIONS): + del EXTENSIONS['aec'] + del EXTENSIONS['avif'] + del EXTENSIONS['bitshuffle'] + del EXTENSIONS['deflate'] + del EXTENSIONS['jpeg2k'] + del EXTENSIONS['jpeg12'] + del EXTENSIONS['jpegls'] + del EXTENSIONS['jpegxl'] + del EXTENSIONS['jpegxr'] + del EXTENSIONS['lerc'] + del EXTENSIONS['ljpeg'] + del EXTENSIONS['lzf'] + del EXTENSIONS['zfp'] + del EXTENSIONS['zopfli'] + OPTIONS['cythonize'] +"))) + #t))))) + (inputs + `(("c-blosc" ,c-blosc) + ("giflib" ,giflib) + ("google-brotli" ,google-brotli) + ("libjpeg-turbo" ,libjpeg-turbo) + ("libpng" ,libpng) + ("libtiff" ,libtiff) + ("libwebp" ,libwebp) + ("lz4" ,lz4) + ("snappy" ,snappy) + ("xz" ,xz) + ("zlib" ,zlib) + ("zstd" ,zstd "lib"))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + ;; For building. + `(("python-cython" ,python-cython) + ;; For testing. Incomplete. + ;("python-numcodecs" ,python-numcodecs) + ;("python-zarr" ,python-zarr) + ;("python-pytest" ,python-pytest) + )) + (home-page "https://www.lfd.uci.edu/~gohlke/") + (synopsis + "Image transformation, compression, and decompression codecs") + (description + "Imagecodecs is a Python library that provides block-oriented, in-memory +buffer transformation, compression, and decompression functions for use in the +tifffile, czifile, and other scientific image input/output modules.") + (license license:bsd-3))) + (define-public python-roifile (package (name "python-roifile") - (version "2020.5.28") + (version "2020.11.28") (source (origin (method url-fetch) (uri (pypi-uri "roifile" version)) (sha256 (base32 - "1vwbwfsw745gyqymff6dllc5zqjsgqmxaw245sw4an6yw9rcbzc0")))) + "04argnc7qccybkrj9ww18bf81ghsghhh93hnqy3p111rcdlyn66p")))) (build-system python-build-system) (arguments `(#:tests? #f)) ; there are none (propagated-inputs @@ -6026,21 +6888,20 @@ regions of interest, geometric shapes, paths, text, etc for image overlays.") (define-public python-tifffile (package (name "python-tifffile") - (version "2020.6.3") + (version "2021.4.8") (source (origin (method url-fetch) (uri (pypi-uri "tifffile" version)) (sha256 (base32 - "0xv3ynkbrsibqvx7250075idb7wm3canjd6lx2nzf3cbp6l07577")))) + "16r0hw7shka1bqf28bv198lj2jhf2r9gy3s5zv4nf5cfsfm8pajm")))) (build-system python-build-system) ;; Tests require lfdfiles, which depends on tifffile (arguments `(#:tests? #f)) (propagated-inputs `(("python-numpy" ,python-numpy) - ;;("python-lfdfiles" ,python-lfdfiles) - ("python-roifile" ,python-roifile))) + ("python-imagecodecs" ,python-imagecodecs))) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Read and write TIFF(r) files") (description "This package lets you read image and metadata from many @@ -6052,19 +6913,28 @@ numpy arrays to TIFF, BigTIFF, and ImageJ hyperstack compatible files.") (define-public python-lfdfiles (package (name "python-lfdfiles") - (version "2020.1.1") + (version "2021.2.22") (source (origin (method url-fetch) (uri (pypi-uri "lfdfiles" version)) (sha256 (base32 - "1n9bkfn4vxl0lbhzd0m35lq86ayx5fwcj3ghpfl2vbjbsnfp3h47")))) + "12fxm4v805dgjrih7x6jnl1wd7y7jw1rkhjs3d4am8s6qk1cbar2")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete pre-generated Cython files. + (for-each delete-file (find-files "lfdfiles" "_.*\\.c$")) + #t)))) (build-system python-build-system) + (arguments + `(#:tests? #f)) ; No tests exist, despite a test dependency on pytest. (propagated-inputs `(("python-click" ,python-click) ("python-numpy" ,python-numpy) ("python-tifffile" ,python-tifffile))) + (native-inputs `(("python-cython" ,python-cython))) (home-page "https://www.lfd.uci.edu/~gohlke/") (synopsis "Work with LFD data files") (description @@ -6160,7 +7030,7 @@ a front-end for C compilers or analysis tools.") (define-public python-xlsxwriter (package (name "python-xlsxwriter") - (version "1.3.7") + (version "1.3.9") (source (origin ;; There are no tests in the PyPI tarball. @@ -6170,7 +7040,7 @@ a front-end for C compilers or analysis tools.") (commit (string-append "RELEASE_" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1qg40r2mwrqfmhaxnary1cfgi0dwwazp5qga7c9p2cdji2v0x5rm")))) + (base32 "04idf331rp0iyhlnh7268jmim8ydw4jjb81hr5rh548sqnq4bhpl")))) (build-system python-build-system) (home-page "https://github.com/jmcnamara/XlsxWriter") (synopsis "Python module for creating Excel XLSX files") @@ -6424,13 +7294,13 @@ PNG, PostScript, PDF, and SVG file output.") (define-public python-decorator (package (name "python-decorator") - (version "4.3.0") + (version "5.0.9") (source (origin (method url-fetch) (uri (pypi-uri "decorator" version)) (sha256 - (base32 "0308djallnh00v112y5b7nadl657ysmkp6vc8xn51d6yzc9zm7n3")))) + (base32 "1mcy64hllgm938v8k1x2a4g0q9swsnrfnsvhz59kr28a6ajgpv3j")))) (build-system python-build-system) (home-page "https://pypi.org/project/decorator/") (synopsis "Python module to simplify usage of decorators") @@ -6583,9 +7453,6 @@ cluster directly from Python. You can directly map Python functions onto the cluster without needing to write any wrapper code yourself.") (license license:gpl3+))) -(define-public python2-gridmap - (package-with-python2 python-gridmap)) - (define-public python-honcho (package (name "python-honcho") @@ -6630,6 +7497,31 @@ The output of all running processes is collected by honcho and displayed.") (license license:expat))) +(define-public python-pebble + (package + (name "python-pebble") + (version "4.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Pebble" version)) + (sha256 + (base32 "16siqc3brbk7dp4d9sg48bjl6a8wyy24aib3il1hf4y2624draxh")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ (invoke "python" "-m" "pytest" "-sv")))))) + (home-page "https://github.com/noxdafox/pebble") + (synopsis "Threading and multiprocessing for Python") + (description + "Pebble aims to help manage threads and processes in an easier way. It +wraps Python's standard library threading and multiprocessing objects.") + (license license:lgpl3+))) + (define-public python-pexpect (package (name "python-pexpect") @@ -7157,9 +8049,6 @@ profile, launches a cluster and returns a view. On program exit it shuts the cluster down and deletes the throwaway profile.") (license license:expat))) -(define-public python2-ipython-cluster-helper - (package-with-python2 python-ipython-cluster-helper)) - (define-public python-traitlets (package (name "python-traitlets") @@ -7178,7 +8067,8 @@ cluster down and deletes the throwaway profile.") (replace 'check (lambda _ (invoke "pytest" "-vv" "traitlets")))))) (propagated-inputs `(("python-ipython-genutils" ,python-ipython-genutils) - ("python-decorator" ,python-decorator))) + ("python-decorator" ,python-decorator) + ("python-six" ,python-six))) (native-inputs `(("python-pytest" ,python-pytest))) (properties `((python2-variant . ,(delay python2-traitlets)))) @@ -7212,10 +8102,52 @@ without using the configuration machinery.") (base32 "1d12j5hkff0xiax87pnhmzbsph3jqqzhz16h8xld7z2y4armq0kr")))) (build-system python-build-system) - ;; FIXME: not sure how to run the tests - (arguments `(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + ; Some tests write to $HOME. + (setenv "HOME" "/tmp") + ; Some tests load the installed package. + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv")))) + (add-after 'unpack 'patch-testsuite + (lambda _ + ;; test_not_on_path() and test_path_priority() try to run a test + ;; that loads jupyter_core, so we need PYTHONPATH + (substitute* "jupyter_core/tests/test_command.py" + (("env = \\{'PATH': ''\\}") + "env = {'PATH': '', 'PYTHONPATH': os.environ['PYTHONPATH']}") + (("env = \\{'PATH': str\\(b\\)\\}") + "env = {'PATH': str(b), 'PYTHONPATH': os.environ['PYTHONPATH']}")) + #t)) + ;; Migration is running whenever etc/jupyter exists, but the + ;; Guix-managed directory will never contain any migratable IPython + ;; config files and cannot be written to anyway, so just pretend we + ;; already did that. + (add-after 'install 'disable-migration + (lambda* (#:key outputs #:allow-other-keys) + (mkdir-p (string-append (assoc-ref outputs "out") "/etc/jupyter")) + (invoke "touch" + (string-append + (assoc-ref outputs "out") + "/etc/jupyter/migrated"))))))) (propagated-inputs `(("python-traitlets" ,python-traitlets))) + (native-inputs + `(("python-six" ,python-six) + ("python-pytest" ,python-pytest))) + ;; This package provides the `jupyter` binary and thus also exports the + ;; search paths. + (native-search-paths + (list (search-path-specification + (variable "JUPYTER_CONFIG_DIR") + (files '("etc/jupyter"))) + (search-path-specification + (variable "JUPYTER_PATH") + (files '("share/jupyter"))))) (home-page "https://jupyter.org/") (synopsis "Jupyter base package") (description @@ -7234,19 +8166,22 @@ without using the configuration machinery.") (base32 "10p7fcgvv9hvz9zical9wk68ks5ssak2ykbzx65wm1k1hk8a3g64")))) (build-system python-build-system) - ;; Tests fail because of missing native python kernel which I assume is - ;; provided by the ipython package, which we cannot use because it would - ;; cause a dependency cycle. (arguments - `(#:tests? #f - #:phases (modify-phases %standard-phases - (add-after 'unpack 'set-tool-file-names - (lambda* (#:key inputs #:allow-other-keys) - (let ((iproute (assoc-ref inputs "iproute"))) - (substitute* "jupyter_client/localinterfaces.py" - (("'ip'") - (string-append "'" iproute "/sbin/ip'"))) - #t)))))) + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-tool-file-names + (lambda* (#:key inputs #:allow-other-keys) + (let ((iproute (assoc-ref inputs "iproute"))) + (substitute* "jupyter_client/localinterfaces.py" + (("'ip'") + (string-append "'" iproute "/sbin/ip'"))) + #t))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Some tests try to write to $HOME. + (setenv "HOME" "/tmp") + (invoke "pytest" "-vv"))))))) (inputs `(("iproute" ,iproute))) (propagated-inputs @@ -7256,7 +8191,14 @@ without using the configuration machinery.") ("python-tornado" ,python-tornado-6) ("python-traitlets" ,python-traitlets))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest) + ("python-pytest-asyncio" ,python-pytest-asyncio) + ("python-pytest-timeout" ,python-pytest-timeout) + ("python-async-generator" ,python-async-generator) + ("python-mock" ,python-mock) + ("python-msgpack" ,python-msgpack) + ("python-ipython" ,python-ipython) + ("python-ipykernel" ,python-ipykernel-bootstrap))) (home-page "https://jupyter.org/") (synopsis "Jupyter protocol implementation and client libraries") (description @@ -7266,8 +8208,19 @@ for working with kernels, and the @code{jupyter kernelspec} entrypoint for installing @code{kernelspec}s for use with Jupyter frontends.") (license license:bsd-3))) -(define-public python2-jupyter-client - (package-with-python2 python-jupyter-client)) +;; Bootstrap variant of jupyter-client, which breaks the loop between ipykernel +;; and jupyter-client by removing the former from its native-inputs and +;; disabling tests. +(define-public python-jupyter-client-bootstrap + (let ((base python-jupyter-client)) + (hidden-package + (package + (inherit base) + (name "python-jupyter-client-bootstrap") + (arguments + `(#:tests? #f + ,@(package-arguments base))) + (native-inputs `()))))) (define-public python-ipykernel (package @@ -7300,6 +8253,8 @@ installing @code{kernelspec}s for use with Jupyter frontends.") #t)))))) (propagated-inputs `(("python-ipython" ,python-ipython) + ("python-tornado" ,python-tornado-6) + ("python-traitlets" ,python-traitlets) ;; imported at runtime during connect ("python-jupyter-client" ,python-jupyter-client))) (native-inputs @@ -7312,6 +8267,19 @@ installing @code{kernelspec}s for use with Jupyter frontends.") "This package provides the IPython kernel for Jupyter.") (license license:bsd-3))) +;; Bootstrap variant of ipykernel, which uses the bootstrap jupyter-client to +;; break the cycle between ipykernel and jupyter-client. +(define-public python-ipykernel-bootstrap + (let ((parent python-ipykernel)) + (hidden-package + (package + (inherit parent) + (name "python-ipykernel-bootstrap") + (propagated-inputs + `(("python-jupyter-client" ,python-jupyter-client-bootstrap) + ,@(fold alist-delete (package-propagated-inputs parent) + '("python-jupyter-client")))))))) + (define-public python-pari-jupyter (package (name "python-pari-jupyter") @@ -7442,70 +8410,6 @@ callback signature using a prototype function.") Powerful interactive shells, a browser-based notebook, support for interactive data visualization, embeddable interpreters and tools for parallel computing.") - (properties `((python2-variant . ,(delay python2-ipython)))) - (license license:bsd-3))) - -;; This is the latest release of the LTS version of ipython with support for -;; Python 2.7 and Python 3.x. Later non-LTS versions starting from 6.0 have -;; dropped support for Python 2.7. -(define-public python2-ipython - (package - (name "python2-ipython") - (version "5.8.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "ipython" version ".tar.gz")) - (sha256 - (base32 "01l93i4hspf0lvhmycvc8j378bslm9rw30mwfspsl6v1ayc69b2b")))) - (build-system python-build-system) - (propagated-inputs - `(("python2-backports-shutil-get-terminal-size" - ,python2-backports-shutil-get-terminal-size) - ("python2-pathlib2" ,python2-pathlib2) - ("python2-pyzmq" ,python2-pyzmq) - ("python2-prompt-toolkit" ,python2-prompt-toolkit-1) - ("python2-terminado" ,python2-terminado) - ("python2-matplotlib" ,python2-matplotlib) - ("python2-numpy" ,python2-numpy) - ("python2-numpydoc" ,python2-numpydoc) - ("python2-jinja2" ,python2-jinja2) - ("python2-mistune" ,python2-mistune) - ("python2-pexpect" ,python2-pexpect) - ("python2-pickleshare" ,python2-pickleshare) - ("python2-simplegeneric" ,python2-simplegeneric) - ("python2-jsonschema" ,python2-jsonschema) - ("python2-traitlets" ,python2-traitlets) - ("python2-nbformat" ,python2-nbformat) - ("python2-pygments" ,python2-pygments))) - (inputs - `(("readline" ,readline) - ("which" ,which))) - (native-inputs - `(("graphviz" ,graphviz) - ("pkg-config" ,pkg-config) - ("python2-requests" ,python2-requests) ;; for tests - ("python2-testpath" ,python2-testpath) - ("python2-mock" ,python2-mock) - ("python2-nose" ,python2-nose))) - (arguments - `(#:python ,python-2 - #:phases - (modify-phases %standard-phases - (add-before 'check 'delete-broken-tests - (lambda* (#:key inputs #:allow-other-keys) - ;; These tests throw errors for unknown reasons. - (delete-file "IPython/core/tests/test_displayhook.py") - (delete-file "IPython/core/tests/test_magic_terminal.py") - (delete-file "IPython/core/tests/test_profile.py") - #t))))) - (home-page "https://ipython.org") - (synopsis "IPython is a tool for interactive computing in Python") - (description - "IPython provides a rich architecture for interactive computing with: -Powerful interactive shells, a browser-based notebook, support for interactive -data visualization, embeddable interpreters and tools for parallel -computing.") (license license:bsd-3))) (define-public python-ipython-documentation @@ -7553,10 +8457,10 @@ computing.") `(("python-sphinx" ,python-sphinx) ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) ;; FIXME: It's possible that a smaller union would work just as well. - ("texlive" ,(texlive-union (list texlive-amsfonts + ("texlive" ,(texlive-union (list texlive-amsfonts/patched texlive-fonts-ec texlive-generic-ifxetex - texlive-generic-pdftex + texlive-pdftex texlive-latex-capt-of texlive-latex-cmap texlive-latex-environ @@ -7611,7 +8515,8 @@ features useful for text console applications.") (define-public python2-urwid (let ((base (package-with-python2 (strip-python2-variant python-urwid)))) - (package/inherit base + (package + (inherit base) (version "2.1.0") (source (origin @@ -7655,6 +8560,43 @@ features useful for text console applications.") supports @code{readline} shortcuts.") (license license:expat))) +(define-public python-textdistance + (package + (name "python-textdistance") + (version "4.2.1") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/life4/textdistance") + (commit (string-append "v." version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1g17i356fnny4k6hjr2ayy9k77jbvd6zzmngws2kbrnvhss1wgwf")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-external-test + (lambda _ + ;; All tests in this file require external libraries. + (delete-file "tests/test_external.py") + #t))))) + (native-inputs + `(("python-hypothesis" ,python-hypothesis) + ("python-isort" ,python-isort) + ("python-numpy" ,python-numpy) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner) + ("python-tabulate" ,python-tabulate))) + (home-page "https://github.com/life4/textdistance") + (synopsis "Compute distance between the two texts") + (description "@code{textdistance} is a pure Python library for comparing +distance between two or more sequences by many algorithms.") + (license license:expat))) + (define-public python-urwidtrees (package (name "python-urwidtrees") @@ -7910,13 +8852,13 @@ interfaces in an easy and portable manner.") (define-public python-networkx (package (name "python-networkx") - (version "2.5") + (version "2.6.2") (source (origin (method url-fetch) (uri (pypi-uri "networkx" version)) (sha256 - (base32 "00hnii2lplig2s324k1hvi29pyfab6z7i22922f67jgv4da9ay3r")))) + (base32 "1fqrq7gc0nn4rd4zqibw96cap75vb5nlixapkajwawp71jaz21i3")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases @@ -8046,6 +8988,40 @@ solve linear problems.") algorithm.") (license license:asl2.0))) +(define-public python-three-merge + (package + (name "python-three-merge") + (version "0.1.1") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/spyder-ide/three-merge") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1fw28swh6jq4myr09j7gv68l241b8vwg470ak5xv0x4xwh2a1m86")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest")) + (propagated-inputs + `(("python-diff-match-patch" ,python-diff-match-patch))) + (native-inputs + `(("python-flaky" ,python-flaky) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner) + ("python-pytest-timeout" ,python-pytest-timeout))) + (home-page "https://github.com/spyder-ide/three-merge") + (synopsis "Library for merging two strings with respect to a base one") + (description + "This package provides a Python library to perform a 3-way merge between +strings, based on @code{diff-match-patch}. This library performs merges at a +character level, as opposed to most VCS systems, which opt for a line-based +approach.") + (license license:expat))) + (define-public snakemake (package (name "snakemake") @@ -8120,26 +9096,28 @@ SVG, EPS, PNG and terminal output.") (define-public python-seaborn (package (name "python-seaborn") - (version "0.10.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (pypi-uri "seaborn" version)) (sha256 - (base32 "1ffbms4kllihfycf6j57dziq4imgdjw03sqgifh5wzcd2d743zjr")))) + (base32 "1b81p9s6li3b606ivgbynrh102fclwlw74m8qxzsii9pv6p8xrs4")) + (patches (search-patches "python-seaborn-kde-test.patch")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (add-before 'check 'start-xserver - (lambda* (#:key inputs #:allow-other-keys) - (let ((xorg-server (assoc-ref inputs "xorg-server"))) - ;; There must be a running X server and make check doesn't - ;; start one. Therefore we must do it. - (system (format #f "~a/bin/Xvfb :1 &" xorg-server)) - (setenv "DISPLAY" ":1") - #t))) - (replace 'check (lambda _ (invoke "pytest" "seaborn") #t))))) + (lambda _ + ;; There must be a running X server and make check doesn't + ;; start one. Therefore we must do it. + (system "Xvfb :1 &") + (setenv "DISPLAY" ":1"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "seaborn"))))))) (propagated-inputs `(("python-pandas" ,python-pandas) ("python-matplotlib" ,python-matplotlib) @@ -8222,9 +9200,6 @@ more advanced mathematics.") multiprecision arithmetic.") (license license:lgpl3+))) -(define-public python2-bigfloat - (package-with-python2 python-bigfloat)) - (define-public python-sympy (package (name "python-sympy") @@ -8480,34 +9455,35 @@ applications.") (define-public python-pyzmq (package (name "python-pyzmq") - (version "22.0.3") + (version "22.1.0") (source (origin (method url-fetch) (uri (pypi-uri "pyzmq" version)) (sha256 - (base32 "0bgrn65cxfz1c1sjrgyq5dy1mkhppxxbizd5wvrl03cq4zhkrxpp")))) + (base32 "0pa1y97z75xqyca9xfp9zrzksydbgzsxf8yh0hwp0rgahpfxch3h")))) (build-system python-build-system) (arguments `(#:configure-flags (list (string-append "--zmq=" (assoc-ref %build-inputs "zeromq"))) - ;; FIXME: You must build pyzmq with 'python setup.py build_ext - ;; --inplace' for 'python setup.py test' to work. - #:tests? #f)) + #:phases + (modify-phases %standard-phases + (add-before 'check 'build-extensions + (lambda _ + ;; Cython extensions have to be built before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace")))))) (inputs `(("zeromq" ,zeromq))) (native-inputs `(("pkg-config" ,pkg-config) - ("python-nose" ,python-nose))) + ("python-cython" ,python-cython) + ("python-pytest" ,python-pytest))) (home-page "https://github.com/zeromq/pyzmq") (synopsis "Python bindings for 0MQ") (description "PyZMQ is the official Python binding for the ZeroMQ messaging library.") (license license:bsd-4))) -(define-public python2-pyzmq - (package-with-python2 python-pyzmq)) - (define-public python-pep8 ;; This package has been renamed to ‘pycodestyle’ and is no longer updated. ;; Its last release (1.7.1) adds only a scary warning to this effect, breaking @@ -8534,6 +9510,28 @@ PEP 8.") (define-public python2-pep8 (package-with-python2 python-pep8)) +(define-public python-pep8-naming + (package + (name "python-pep8-naming") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pep8-naming" version)) + (sha256 + (base32 + "04kyh9hkpyc8jzj16d1kkk29b5n8miqdvbs0zm035n1z5z5kx6hz")))) + (build-system python-build-system) + (propagated-inputs + `(("python-flake8" ,python-flake8) + ("python-flake8-polyfill" ,python-flake8-polyfill))) + (home-page "https://github.com/PyCQA/pep8-naming") + (synopsis "Check PEP-8 naming conventions") + (description + "This package provides the @code{pep8-naming} Python module, a +plugin for flake8 to check PEP-8 naming conventions.") + (license license:expat))) + (define-public python-pep517 (package (inherit python-pep517-bootstrap) @@ -8588,6 +9586,17 @@ PEP 8.") (define-public python2-pyflakes (package-with-python2 python-pyflakes)) +(define-public python-pyflakes-2.2 + (package + (inherit python-pyflakes) + (version "2.2.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "pyflakes" version)) + (sha256 + (base32 + "1j3zqbiwkyicvww499bblq33x0bjpzdrxajhaysr7sk7x5gdgcim")))))) + (define-public python-mccabe (package (name "python-mccabe") @@ -8616,23 +9625,21 @@ complexity of Python source code.") (define-public python-flake8 (package (name "python-flake8") - (version "3.9.0") + (version "3.9.1") (source (origin (method url-fetch) (uri (pypi-uri "flake8" version)) (sha256 (base32 - "1w65iyjnrwipv4dbcqxh725ri7mdx01d6pjyggd97c0j5cvkx1vq")))) + "0y732h02n2aih8gzyfj4bbhg4jgahyv84mjwfindk2g6w45rka0s")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - (delete 'check) - (add-after 'install 'check + (replace 'check (lambda* (#:key inputs outputs #:allow-other-keys) (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-v") - #t))))) + (invoke "pytest" "-v")))))) (propagated-inputs `(("python-pycodestyle" ,python-pycodestyle) ("python-entrypoints" ,python-entrypoints) @@ -8640,7 +9647,7 @@ complexity of Python source code.") ("python-mccabe" ,python-mccabe))) (native-inputs `(("python-mock" ,python-mock) - ("python-pytest" ,python-pytest-bootstrap))) + ("python-pytest" ,python-pytest))) (home-page "https://gitlab.com/pycqa/flake8") (synopsis "The modular source code checker: pep8, pyflakes and co") @@ -8659,6 +9666,22 @@ complexity of Python source code.") ("python2-typing" ,python2-typing) ,@(package-propagated-inputs base)))))) +(define-public python-flake8-3.8 + (package + (inherit python-flake8) + (version "3.8.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "flake8" version)) + (sha256 + (base32 + "0fvcrsbyzjpcli8ldbpsdbpmf238nkvwc1dy4hy82lf63rvfinma")))) + (propagated-inputs + `(("python-pycodestyle" ,python-pycodestyle-2.6) + ("python-entrypoints" ,python-entrypoints) + ("python-pyflakes" ,python-pyflakes-2.2) + ("python-mccabe" ,python-mccabe))))) + (define-public python-flake8-bugbear (package (name "python-flake8-bugbear") @@ -8744,7 +9767,7 @@ These should be used in preference to using a backslash for line continuation. correct string literal concatenation. It looks for style problems like implicitly concatenated string literals on -the same line (which can be introduced by the code formating tool Black), or +the same line (which can be introduced by the code formatting tool Black), or unnecessary plus operators for explicit string literal concatenation.") (license license:expat))) @@ -8880,6 +9903,27 @@ lints.") (description "This package provides a Flake8 lint for quotes.") (license license:expat))) +(define-public python-flake8-todo + (package + (name "python-flake8-todo") + (version "0.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "flake8-todo" version)) + (sha256 + (base32 + "05arm0sch3r8248035kilmf01z0mxsahw6vpbbz0d343zy8m8k3f")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pycodestyle" ,python-pycodestyle))) + (home-page "https://github.com/schlamar/flake8-todo") + (synopsis "TODO notes checker, plugin for flake8") + (description + "This package provides the @code{flake8-todo} Python module, a +TODO notes checker plugin for flake8.") + (license license:expat))) + (define-public python-autoflake (package (name "python-autoflake") @@ -8956,8 +10000,8 @@ markdown_py is also provided to convert Markdown files to HTML.") ;; Markdown 3.2 dropped support for Python 2. (define-public python2-markdown (let ((base (package-with-python2 (strip-python2-variant python-markdown)))) - (package/inherit - base + (package + (inherit base) (version "3.1.1") (source (origin (method url-fetch) @@ -9075,6 +10119,26 @@ output.") "Python library that makes exceptions handling and inspection easier.") (license license:expat))) +(define-public python-stdlib-list + (package + (name "python-stdlib-list") + (version "0.8.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "stdlib-list" version)) + (sha256 + (base32 + "17vdn4q0sdlndc2fr9svapxx6366hnrhkn0fswp1xmr0jxqh7rd1")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; Tests require more dependencies. + (native-inputs + `(("python-sphinx" ,python-sphinx))) + (home-page "https://github.com/jackmaney/python-stdlib-list") + (synopsis "Python Standard Libraries") + (description "This package contains a list of Python Standard Libraries.") + (license license:expat))) + (define-public python-straight-plugin (package (name "python-straight-plugin") @@ -9125,8 +10189,8 @@ from an XML-based format.") ;; Fonttools 4.x dropped support for Python 2, so stick with 3.x here. (define-public python2-fonttools (let ((base (package-with-python2 (strip-python2-variant python-fonttools)))) - (package/inherit - base + (package + (inherit base) (version "3.44.0") (source (origin (method url-fetch) @@ -9299,14 +10363,14 @@ reading and writing MessagePack data.") (define-public python-netaddr (package (name "python-netaddr") - (version "0.7.19") + (version "0.8.0") (source (origin (method url-fetch) (uri (pypi-uri "netaddr" version)) (sha256 (base32 - "1zdfadvpq4lmcqzr383gywxn4xyn355kj1n3lk9q2l03vmyfrbiq")))) + "0hx2npi0wnhwlcybilgwlddw6qffx1mb7a3sj4p9s7bvl33mgk6n")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;; No tests. (home-page "https://github.com/drkjam/netaddr/") @@ -9381,6 +10445,110 @@ Supported netlink families and protocols include: (define-public python2-wrapt (package-with-python2 python-wrapt)) +(define-public python-commentjson + (package + (name "python-commentjson") + (version "0.9.0") + (source (origin + ;; The PyPI release is missing some test files. + (method git-fetch) + (uri (git-reference + (url "https://github.com/vaidik/commentjson") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "01iscgrc6bkyrxbzmf46csbf9c0n7g6dygdmxs3fq8fkzrrciybl")))) + (build-system python-build-system) + (arguments + `(#:modules ((guix build python-build-system) + (guix build utils) + (ice-9 ftw) + (ice-9 textual-ports)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("lark-parser>=0.7.1,<0.8.0") + "lark-parser>=0.7.1")))) + (add-after 'unpack 'delete-unspported-tests + ;; Some tests rely on the 'test' module of Python itself, + ;; which is not available with the Python package in Guix; + ;; remove them. + (lambda _ + ;; XXX: Copied from (guix build dub-build-system). + (define (grep string file-name) + (string-contains (call-with-input-file file-name get-string-all) + string)) + + (with-directory-excursion "commentjson/tests/test_json" + (let* ((dot? (lambda (x) (member x '("." "..")))) + (test-files (scandir "." (negate dot?)))) + (for-each delete-file + (filter (lambda (f) (grep "from test." f)) + test-files))))))))) + (propagated-inputs + `(("python-lark-parser" ,python-lark-parser))) + (native-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/vaidik/commentjson") + (synopsis "Python library for adding comments to JSON files") + (description "Comment JSON is a Python package that helps you create JSON +files with Python and JavaScript style inline comments. Its API is very +similar to the Python standard library's @code{json} module.") + (license license:expat))) + +(define-public python-resolvelib + (package + (name "python-resolvelib") + (version "0.7.1") + (source + (origin + ;; Tests are missing from the PyPI release. + (method git-fetch) + (uri (git-reference + (url "https://github.com/sarugaku/resolvelib") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fqz75riagizihvf4j7wc3zjw6kmg1dd8sf49aszyml105kb33n8")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest"))))))) + (native-inputs + `(("python-commentjson" ,python-commentjson) + ("python-packaging" ,python-packaging) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/sarugaku/resolvelib") + (synopsis "Abstract dependencies resolver") + (description "The ResolveLib library provides a @code{Resolver} class that +includes dependency resolution logic.") + (license license:isc))) + +;;; This older version is required by ansible-core. +(define-public python-resolvelib-0.5 + (package/inherit python-resolvelib + (name "python-resolvelib") + (version "0.5.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sarugaku/resolvelib") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0697y330sqhiclk25v151qxg7aixzpj434lbg5qib0qlna5zg9la")))))) + (define-public python-commonmark (package (name "python-commonmark") @@ -9438,6 +10606,37 @@ Unicode-aware. It is not intended as an end-user tool.") (define-public python2-xlrd (package-with-python2 python-xlrd)) +(define-public python-xlwt + (package + (name "python-xlwt") + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "xlwt" version)) + (sha256 + (base32 "123c2pdamshkq75wwvck8fq0cjq1843xd3x9qaiz2a4vg9qi56f5")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + (invoke "nosetests" "-v"))))))) + (native-inputs + `(("nose" ,python-nose))) + (home-page "http://www.python-excel.org/") + (synopsis "Library for creating spreadsheet Excel files") + (description "@code{xlwt} is a library for writing data and formatting +information to older Excel files (i.e. .xls). The package itself is pure +Python with no dependencies on modules or packages outside the standard Python +distribution. It is not intended as an end-user tool.") + (license license:bsd-3))) + (define-public python-immutables (package (name "python-immutables") @@ -9583,13 +10782,13 @@ designed to efficiently cope with extremely large amounts of data.") (define-public python-sniffio (package (name "python-sniffio") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "sniffio" version)) (sha256 - (base32 "08bsp2pp2dxzn9yzcafwzw8jlm0jf50as0ix8vfhxzk91w810f4f")))) + (base32 "1pnkvi6wvn4qd37y69n1ls6n8l63gfmn3pvb1jb50gqxxkn6wrn4")))) (build-system python-build-system) (arguments `(#:phases @@ -9687,6 +10886,26 @@ your package is installed, via @code{pkg_resources} (part of primary use case is APIs defined before keyword-only parameters existed.") (license license:gpl3+))) +(define-public python-langdetect + (package + (name "python-langdetect") + (version "1.0.9") + (source + (origin + (method url-fetch) + (uri (pypi-uri "langdetect" version)) + (sha256 + (base32 "1805svvb7xjm4sf1j7b6nc3409x37pd1xmabfwwjf1ldkzwgxhfb")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/Mimino666/langdetect") + (synopsis "Language detection library") + (description + "This library is a port of Nakatani Shuyo's language-detection library +(version from 03/03/2014) to Python.") + (license license:expat))) + (define-public python-pyasn1 (package (name "python-pyasn1") @@ -9733,9 +10952,9 @@ implementations of ASN.1-based codecs and protocols.") (define-public python2-pyasn1-modules (package-with-python2 python-pyasn1-modules)) -(define-public python-ipaddress +(define-public python2-ipaddress (package - (name "python-ipaddress") + (name "python2-ipaddress") (version "1.0.23") (source (origin (method url-fetch) @@ -9744,6 +10963,8 @@ implementations of ASN.1-based codecs and protocols.") (base32 "1qp743h30s04m3cg3yk3fycad930jv17q7dsslj4mfw0jlvf1y5p")))) (build-system python-build-system) + (arguments + `(#:python ,python-2)) (home-page "https://github.com/phihag/ipaddress") (synopsis "IP address manipulation library") (description @@ -9753,8 +10974,29 @@ implementations of ASN.1-based codecs and protocols.") module to older versions of Python.") (license license:psfl))) -(define-public python2-ipaddress - (package-with-python2 python-ipaddress)) +(define-public python-asn1tools + (package + (name "python-asn1tools") + (version "0.158.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asn1tools" version)) + (sha256 + (base32 "1k88a1azmyvp2ab6qcf2i40dig5abhyn7cmlyhmwwh8kr3syvma0")))) + (build-system python-build-system) + (propagated-inputs + `(("python-bitstruct" ,python-bitstruct) + ("python-diskcache" ,python-diskcache) + ("python-prompt-toolkit" ,python-prompt-toolkit) + ("python-pyparsing" ,python-pyparsing))) + (home-page "https://github.com/eerimoq/asn1tools") + (synopsis "ASN.1 parsing, encoding and decoding") + (description "This package provides ASN.1 parsing, encoding and decoding +for Python, including constraints checking. It supports several +codecs (e.g. BER, PER, UPER, XER) as well as limited C source code generating +for OER and UPER.") + (license license:expat))) (define-public python2-ipaddr (package @@ -10144,46 +11386,108 @@ Debian-related files, such as: ;; Modules are either GPLv2+ or GPLv3+. (license license:gpl3+))) +(define-public python-json-spec + (package + (name "python-json-spec") + (version "0.10.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "json-spec" version)) + (sha256 + (base32 + "06dpbsq61ja9r89wpa2pzdii47qh3xri9ajdrgn1awfl102znchb")))) + (build-system python-build-system) + (propagated-inputs + `(("python-pathlib" ,python-pathlib) + ("python-six" ,python-six))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "http://py.errorist.io/json-spec") + (synopsis + "JSON Schema, JSON Pointer and JSON Reference for Python") + (description + "This Python library implements several JSON specs, like JSON Schema, +JSON Reference and JSON Pointer.") + (license license:bsd-3))) + +(define-public python-fastjsonschema + (package + (name "python-fastjsonschema") + (version "2.15.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "fastjsonschema" version)) + (sha256 + (base32 "1ln2j60jzyn6p8i8ljygfgrji58hc23452g7nllkcjdk4p93c7v7")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Fail with a strange backtrace ending in importlib. + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv" "-m" "not benchmark"))))))) + (native-inputs + `(("python-colorama" ,python-colorama) + ("python-json-spec" ,python-json-spec) + ("python-jsonschema" ,python-jsonschema) + ("python-pylint" ,python-pylint) + ("python-pytest" ,python-pytest-6) + ("python-pytest-benchmark" + ,python-pytest-benchmark) + ("python-pytest-cache" ,python-pytest-cache) + ("python-validictory" ,python-validictory))) + (home-page + "https://github.com/horejsek/python-fastjsonschema") + (synopsis + "Fast Python implementation of JSON schema") + (description + "This library implements validation of JSON documents by JSON schema for +drafts 04, 06 and 07.") + (license license:bsd-3))) + (define-public python-nbformat (package (name "python-nbformat") (version "5.1.3") - (source - (origin - (method url-fetch) - (uri (pypi-uri "nbformat" version)) - (sha256 - (base32 - "1j6idwsw59cslsssvlkg2bkfpvd6ri7kghbp14jwcw87sy57h5mm")))) + ;; The PyPi release tarball lacks some test cases and test data. + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jupyter/nbformat.git") + (commit version))) + (sha256 + (base32 + "033v16cfmxzh3jn5phnil4p3silr49iwh9wiigzhv0crc6sanvwz")) + (file-name (git-file-name name version)))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) (propagated-inputs `(("python-ipython-genutils" ,python-ipython-genutils) ("python-jsonschema" ,python-jsonschema) ("python-jupyter-core" ,python-jupyter-core) ("python-traitlets" ,python-traitlets))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-pytest" ,python-pytest) + ("python-fastjsonschema" ,python-fastjsonschema) ; This is only active + ; when setting NBFORMAT_VALIDATOR="fastjsonschema", so include it for + ; testing only. + ("python-testpath" ,python-testpath))) (home-page "https://jupyter.org") (synopsis "Jupyter Notebook format") (description "This package provides the reference implementation of the Jupyter Notebook format and Python APIs for working with notebooks.") - (properties `((python2-variant . ,(delay python2-nbformat)))) (license license:bsd-3))) -(define-public python2-nbformat - (let ((parent (package-with-python2 - (strip-python2-variant python-nbformat)))) - (package - (inherit parent) - (version "4.4.0") - (source - (origin - (method url-fetch) - (uri (pypi-uri "nbformat" version)) - (sha256 - (base32 - "00nlf08h8yc4q73nphfvfhxrcnilaqanb8z0mdy6nxk0vzq4wjgp"))))))) - (define-public python-bleach (package (name "python-bleach") @@ -10345,32 +11649,88 @@ time.") (arguments `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-paths-and-tests + (lambda _ + ;; Use pandoc binary from input. + (substitute* "nbconvert/utils/pandoc.py" + (("'pandoc'") (string-append "'" (which "pandoc") "'"))) + ;; Same for LaTeX. + (substitute* "nbconvert/exporters/pdf.py" + (("\"xelatex\"") (string-append "\"" (which "xelatex") "\"")) + (("\"bibtex\"") (string-append "\"" (which "bibtex") "\""))) + ;; Make sure tests are not skipped. + (substitute* (find-files "." "test_.+\\.py$") + (("@onlyif_cmds_exist\\(('(pandoc|xelatex)'(, )?)+\\)") "")) + ;; Pandoc is never missing, disable test. + (substitute* "nbconvert/utils/tests/test_pandoc.py" + (("import os" all) (string-append all "\nimport pytest")) + (("(.+)(def test_pandoc_available)" all indent def) + (string-append indent "@pytest.mark.skip('disabled by guix')\n" + indent def))) + ;; Not installing pyppeteer, delete test. + (delete-file "nbconvert/exporters/tests/test_webpdf.py") + (substitute* "nbconvert/tests/test_nbconvertapp.py" + (("(.+)(def test_webpdf_with_chromium)" all indent def) + (string-append indent "@pytest.mark.skip('disabled by guix')\n" + indent def))))) (replace 'check (lambda* (#:key tests? inputs outputs #:allow-other-keys) (when tests? + ;; Some tests invoke the installed nbconvert binary. (add-installed-pythonpath inputs outputs) - - ;; This seems to require Chromium. - (delete-file "nbconvert/exporters/tests/test_webpdf.py") - - ;; This depends on the python3 kernel, which is provided by a - ;; package that depends on nbconvert. - (delete-file "nbconvert/preprocessors/tests/test_execute.py") - - ;; Most of these tests fail because nbconvert fails to execute - ;; itself. - (delete-file "nbconvert/tests/test_nbconvertapp.py") - - ;; One test here fails with an unclear error. It looks like - ;; "%%pylabprint" is supposed to be expanded to some other - ;; code, but isn't. - (delete-file "nbconvert/filters/tests/test_strings.py") - + ;; Tries to write to this path. + (unsetenv "JUPYTER_CONFIG_DIR") + ;; Tests depend on templates installed to output. + (setenv "JUPYTER_PATH" + (string-append + (assoc-ref outputs "out") + "/share/jupyter:" + (getenv "JUPYTER_PATH"))) ;; Some tests need HOME (setenv "HOME" "/tmp") - (invoke "pytest"))))))) + (invoke "pytest" "-vv"))))))) + (inputs + `(("pandoc" ,pandoc) + ;; XXX: Disabled, needs substitute*. + ;;("inkscape" ,inkscape) + )) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-ipykernel" ,python-ipykernel) + ;; XXX: Disabled, not in guix. + ;;("python-pyppeteer" ,python-pyppeteer) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-dependency" ,python-pytest-dependency) + ("texlive" ,(texlive-union (list texlive-adjustbox + texlive-amsfonts/patched + texlive-booktabs + texlive-caption + texlive-eurosym + texlive-fonts-rsfs + texlive-generic-ulem + texlive-iftex + texlive-jknappen + texlive-latex-amsmath + texlive-latex-enumitem + texlive-latex-fancyvrb + texlive-latex-float + texlive-latex-fontspec + texlive-latex-geometry + texlive-latex-hyperref + texlive-latex-jknapltx + texlive-latex-ms + texlive-latex-oberdiek + texlive-latex-parskip + texlive-latex-trimspaces + texlive-latex-upquote + texlive-latex-ucs + texlive-lm + texlive-mathpazo + texlive-tcolorbox + texlive-titling + texlive-tools + texlive-xcolor + texlive-zapfding))))) (propagated-inputs `(("python-bleach" ,python-bleach) ("python-defusedxml" ,python-defusedxml) @@ -10384,7 +11744,9 @@ time.") ("python-pygments" ,python-pygments) ("python-jupyterlab-pygments" ,python-jupyterlab-pygments) ("python-testpath" ,python-testpath) - ("python-traitlets" ,python-traitlets))) + ("python-traitlets" ,python-traitlets) + ;; Required, even if [serve] is not used. + ("python-tornado" ,python-tornado-6))) (home-page "https://jupyter.org") (synopsis "Converting Jupyter Notebooks") (description "The @code{nbconvert} tool, @{jupyter nbconvert}, converts @@ -10400,38 +11762,7 @@ convert an @code{.ipynb} notebook file into various static formats including: @item ReStructured Text (rst) @item executable script @end enumerate\n") - (license license:bsd-3) - (properties `((python2-variant . ,(delay python2-nbconvert)))))) - -(define-public python2-nbconvert - (let ((parent - (package-with-python2 - (strip-python2-variant python-nbconvert)))) - (package - (inherit parent) - (version "5.0.0b1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "nbconvert" version)) - (sha256 - (base32 - "0brclbb18l4nmd5qy3dl9wn05rjdh1fz4rmzdlfqacj12rcdvdgp")))) - (arguments - `(;; The "bdist_egg" target is disabled by default, causing the installation - ;; to fail. - #:configure-flags (list "bdist_egg") - ;; FIXME: 5 failures, 40 errors. - #:tests? #f)) - (propagated-inputs - `(("python-bleach" ,python-bleach) - ("python-entrypoints" ,python-entrypoints) - ("python-jinja2" ,python-jinja2) - ("python-jupyter-core" ,python-jupyter-core) - ("python-mistune" ,python-mistune) - ("python-nbformat" ,python-nbformat) - ("python-pygments" ,python-pygments) - ("python-traitlets" ,python-traitlets)))))) + (license license:bsd-3))) (define-public python-notebook (package @@ -10453,6 +11784,9 @@ convert an @code{.ipynb} notebook file into various static formats including: (delete-file-recursively "notebook/tests/selenium") (when tests? (add-installed-pythonpath inputs outputs) + ;; Some tests do not expect all files to be installed in the + ;; same directory, but JUPYTER_PATH contains multiple entries. + (unsetenv "JUPYTER_PATH") ;; Some tests need HOME (setenv "HOME" "/tmp") (with-directory-excursion "/tmp" @@ -10487,29 +11821,8 @@ convert an @code{.ipynb} notebook file into various static formats including: (description "The Jupyter HTML notebook is a web-based notebook environment for interactive computing.") - (properties `((python2-variant . ,(delay python2-notebook)))) (license license:bsd-3))) -(define-public python2-notebook - (let ((base (package-with-python2 - (strip-python2-variant python-notebook)))) - (package/inherit base - (native-inputs - `(("python2-mock" ,python2-mock) - ,@(package-native-inputs base))) - (arguments - (substitute-keyword-arguments (package-arguments base) - ((#:phases phases) - `(modify-phases ,phases - (add-before 'check 'disable-test-case - ;; The test requires network access to localhost. Curiously it - ;; fails with Python 2 only. Simply make the test-case return - ;; immediately. - (lambda _ - (substitute* - "notebook/services/nbconvert/tests/test_nbconvert_api.py" - (("formats = self.nbconvert_api") "return #"))))))))))) - (define-public python-widgetsnbextension (package (name "python-widgetsnbextension") @@ -10707,10 +12020,6 @@ popular online obfuscators.") ("python-nbconvert" ,python-nbconvert) ("python-notebook" ,python-notebook) ("python-qtconsole" ,python-qtconsole))) - (native-search-paths - (list (search-path-specification - (variable "JUPYTER_PATH") - (files '("share/jupyter"))))) (home-page "https://jupyter.org") (synopsis "Web application for interactive documents") (description @@ -10748,6 +12057,27 @@ automatically detect a wide range of file encodings.") (define-public python2-chardet (package-with-python2 python-chardet)) +(define-public python-charset-normalizer + (package + (name "python-charset-normalizer") + (version "2.0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "charset-normalizer" version)) + (sha256 + (base32 "0rr3iv2xw4rz5ijnfqk229fw85cq6p6rhqqsilm0ldzncblfg63h")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/ousret/charset_normalizer") + (synopsis "Universal Charset Detector, alternative to Chardet") + (description "This library helps you read text from an unknown charset +encoding. Motivated by @code{chardet}, it tries to resolve the issue by +taking a new approach. All IANA character set names for which the Python core +library provides codecs are supported.") + (license license:expat))) + (define-public python-docopt (package (name "python-docopt") @@ -11001,6 +12331,44 @@ for atomic file system operations.") (define-public python2-atomicwrites (package-with-python2 python-atomicwrites)) +(define-public python-qstylizer + (package + (name "python-qstylizer") + (version "0.1.10") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/blambright/qstylizer") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zvkn6g1dn51kkw33v8qrlnwlmf5h6sw1ay3bh14ifjr8b9xsjjz")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + (add-before 'build 'set-pbr-version + (lambda _ + (setenv "PBR_VERSION" "3.0.1")))))) + (native-inputs + `(("python-pbr" ,python-pbr) + ("python-pytest" ,python-pytest) + ("python-pytest-catchlog" ,python-pytest-catchlog) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock) + ("python-pytest-runner" ,python-pytest-runner) + ("python-pytest-xdist" ,python-pytest-xdist))) + (propagated-inputs + `(("python-inflection" ,python-inflection) + ("python-tinycss" ,python-tinycss))) + (home-page "https://github.com/blambright/qstylizer") + (synopsis "Qt stylesheet generation utility for PyQt/PySide") + (description "@code{qstylizer} is a Python package designed to help with +the construction of PyQt/PySide stylesheets.") + (license license:expat))) + (define-public python-click-threading (package (name "python-click-threading") @@ -11119,24 +12487,26 @@ pure Python module that works on virtually all Python versions.") (define-public python-execnet (package (name "python-execnet") - (version "1.4.1") + (version "1.9.0") (source (origin - (method url-fetch) - (uri (pypi-uri "execnet" version)) - (sha256 - (base32 - "1rpk1vyclhg911p3hql0m0nrpq7q7mysxnaaw6vs29cpa6kx8vgn")))) + (method url-fetch) + (uri (pypi-uri "execnet" version)) + (sha256 + (base32 + "1ia7dvrh0gvzzpi758mx55f9flr16bzdqlmi12swm4ncm4xlyscg")) + (patches (search-patches "python-execnet-read-only-fix.patch")))) (build-system python-build-system) (arguments - `(;; 2 failed, 275 passed, 670 skipped, 4 xfailed - ;; The two test failures are caused by the lack of an `ssh` executable. - ;; The test suite can be run with pytest after the 'install' phase. - #:tests? #f)) + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv"))))))) (native-inputs `(("python-pytest" ,python-pytest) ("python-setuptools-scm" ,python-setuptools-scm))) - (propagated-inputs - `(("python-apipkg" ,python-apipkg))) (synopsis "Rapid multi-Python deployment") (description "Execnet provides a share-nothing model with channel-send/receive communication for distributing execution across many @@ -11227,13 +12597,13 @@ output, progress bar display, and pipes.") (define-public python-rply (package (name "python-rply") - (version "0.7.5") + (version "0.7.8") (source (origin (method url-fetch) (uri (pypi-uri "rply" version)) (sha256 (base32 - "0lv428895zxsz43968qx0q9bimwqnfykndz4dpjbq515w2gvzhjh")))) + "1j81nddvnb145x4p81bnfpyai6g26i2dc1633ycsk025bb18m01a")))) (build-system python-build-system) (propagated-inputs `(("python-appdirs" ,python-appdirs))) @@ -11287,6 +12657,25 @@ its Lisp code into the Python Abstract Syntax Tree, you have the whole world of Python at your fingertips, in Lisp form.") (license license:expat))) +(define-public python-hissp + (package + (name "python-hissp") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hissp" version)) + (sha256 + (base32 + "0yns7f0q699zn2ziagyas2nkndl7mp1hhssv9x9mpl7jxj2p5myw")))) + (build-system python-build-system) + (home-page "https://github.com/gilch/hissp") + (synopsis "It's Python with a Lissp") + (description "Hissp is a modular Lisp implementation that compiles to a +functional subset of Python—Syntactic macro metaprogramming with full access +to the Python ecosystem.") + (license license:asl2.0))) + (define-public python2-functools32 (package (name "python2-functools32") @@ -12063,14 +13452,13 @@ designed to work across multiple versions of Python.") (define-public python-cookiecutter (package (name "python-cookiecutter") - (version "1.7.2") + (version "1.7.3") (source (origin (method url-fetch) (uri (pypi-uri "cookiecutter" version)) (sha256 - (base32 - "1b2xa5dypk1vf8aq599fd8zw4y0pwvq3hgl7ia8aiv8gg3ab5dpg")))) + (base32 "0mx49whhwcxmvcak27zr7p7ndzkn3w7psfd7fzh3n91fi1r4v6kb")))) (build-system python-build-system) (native-inputs `(("python-freezegun" ,python-freezegun) @@ -12225,9 +13613,6 @@ also includes support for using Thrift RPC over AMQP in Twisted applications.") (license license:asl2.0))) -(define-public python2-txamqp - (package-with-python2 python-txamqp)) - (define-public python-kombu (package (name "python-kombu") @@ -12383,6 +13768,119 @@ ISO 8859, etc.).") (define-public python2-translitcodec (package-with-python2 python-translitcodec)) +(define-public python-anyqt + (package + (name "python-anyqt") + (version "0.0.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "AnyQt" version)) + (sha256 + (base32 "0gl2czirzjvhbq963i2awxp8kwbc1grh67lpcwfipyn9w3kdwdj4")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ;there are no tests + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-files + ;; Delete files related to other operating systems. + (lambda _ + (delete-file "AnyQt/QtMacExtras.py") + (delete-file "AnyQt/QtWinExtras.py") + #t))))) + (home-page "https://github.com/ales-erjavec/anyqt") + (synopsis "PyQt4/PyQt5 compatibility layer") + (description "AnyQt is a PyQt4/PyQt5 compatibility layer.") + (license license:gpl3))) + +(define-public python-pyqtgraph + (package + (name "python-pyqtgraph") + (version "0.12.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyqtgraph" version)) + (sha256 + (base32 "0kc7ncv0lr3spni29i9g8nszyr4xinswqi2zzs6v8kqqi593pvyj")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'check 'set-home-and-qpa + (lambda _ + (setenv "HOME" "/tmp") + (setenv "QT_QPA_PLATFORM" "offscreen") + #t)) + (replace 'check + (lambda* (#:key inputs outputs #:allow-other-keys) + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv" "-k" + ;; These tests try to download online data. + (string-append "not test_PolyLineROI" + " and not test_getArrayRegion_axisorder" + " and not test_getArrayRegion" + " and not test_PlotCurveItem" + " and not test_NonUniformImage_colormap" + " and not test_NonUniformImage_lut" + " and not test_ImageItem_axisorder" + " and not test_ImageItem"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-xdist" ,python-pytest-xdist))) + (inputs + `(("qtbase" ,qtbase-5))) + (propagated-inputs + `(("python-h5py" ,python-h5py) + ("python-numpy" ,python-numpy) + ("python-pyopengl" ,python-pyopengl) + ("python-scipy" ,python-scipy) + ("python-pyqt" ,python-pyqt))) + (home-page "http://www.pyqtgraph.org") + (synopsis "Scientific graphics and GUI library for Python") + (description + "PyQtGraph is a Pure-python graphics library for PyQt5, PyQt6, PySide2 +and PySide6. It is intended for use in mathematics, scientific or engineering +applications.") + (license license:expat))) + +(define-public python-qasync + (package + (name "python-qasync") + (version "0.15.0") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/CabbageDevelopment/qasync/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0va9h6v102d7mxz608banjc0l0v02dq3ywhr5i4nqaxx3qkazc2l")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + (add-before 'check 'set-qpa + (lambda _ + (setenv "QT_QPA_PLATFORM" "offscreen") + #t))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-pyqt" ,python-pyqt))) + (home-page "https://github.com/CabbageDevelopment/qasync") + (synopsis "Implementation of the PEP 3156 Event-Loop with Qt") + (description + "@code{qasync} allows coroutines to be used in PyQt/PySide applications +by providing an implementation of the PEP 3156 event-loop.") + (license license:bsd-2))) + (define-public python-editor (package (name "python-editor") @@ -12461,16 +13959,15 @@ way.") (define-public python-munkres (package (name "python-munkres") - (version "1.0.8") + (version "1.1.4") (source (origin (method url-fetch) (uri (pypi-uri "munkres" version)) (sha256 (base32 - "0mbspx4zv8id4x6pim6ybsa1xh96qwpbqj7skbqz4c9c9nf1lpqq")))) + "00yvj8bxmhhhhd74v7j0x673is7vizmxwgb3dd5xmnkr74ybyi7w")))) (build-system python-build-system) - (arguments - '(#:tests? #f)) ; no test suite + (native-inputs `(("python-pytest" ,python-pytest-6))) (home-page "https://software.clapper.org/munkres/") (synopsis "Implementation of the Munkres algorithm") (description "The Munkres module provides an implementation of the Munkres @@ -12599,29 +14096,30 @@ ambiguities (forward vs. backward slashes, etc.). (define-public python-jellyfish (package (name "python-jellyfish") - (version "0.5.6") + (version "0.8.8") (source (origin (method url-fetch) (uri (pypi-uri "jellyfish" version)) (sha256 (base32 - "1j9rplb16ba2prjj6mip46z0w9pnhnqpwgiwi0x93vnas14rlyl8")))) + "0p2s6b30sfffx8sya2i8kz0i0riw9fq1fi0k89s8kdgrmjf0h1h5")))) (build-system python-build-system) + (arguments + `(#:tests? #f ; XXX: Tests cannot find C coded version. + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv" "jellyfish/test.py"))))))) (native-inputs `(("python-pytest" ,python-pytest))) (home-page "https://github.com/jamesturk/jellyfish") (synopsis "Approximate and phonetic matching of strings") (description "Jellyfish uses a variety of string comparison and phonetic encoding algorithms to do fuzzy string matching.") - (license license:bsd-2) - (properties `((python2-variant . ,(delay python2-jellyfish)))))) - -(define-public python2-jellyfish - (let ((jellyfish (package-with-python2 - (strip-python2-variant python-jellyfish)))) - (package/inherit jellyfish - (native-inputs `(("python2-unicodecsv" ,python2-unicodecsv) - ,@(package-native-inputs jellyfish)))))) + (license license:bsd-2))) (define-public python2-unicodecsv (package @@ -12701,32 +14199,88 @@ can also be used to get the exact location, font or color of the text.") (define-public python-rarfile (package (name "python-rarfile") - (version "2.8") + (version "4.0") (source (origin (method url-fetch) (uri (pypi-uri "rarfile" version)) (sha256 (base32 - "0qfad483kcbga0bn4qmcz953xjk16r52fahiy46zzn56v80y89ra")))) + "1882wv9szcm29mnyhjmspyflyr2l7z73srn14w4dlnww49lqfm37")))) (build-system python-build-system) (arguments - '(#:phases + `(#:tests? #f ;; The bsdtar utility is very limited and most tests fail. + #:phases (modify-phases %standard-phases + (add-after 'unpack 'patch + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "rarfile.py" + ;; Disable unrar and unar, which are unavailable on Guix. + (("(unrar|unar)=True" all tool) (string-append tool "=False")) + ;; Hardcode path to bsdtar + (("\"bsdtar\"") + (string-append "\"" (assoc-ref inputs "libarchive") "/bin/bsdtar\""))) + #t)) (replace 'check - ;; Many tests fail, but the installation proceeds. - (lambda _ (invoke "make" "-C" "test" "test")))))) - (native-inputs - `(("which" ,which))) ; required for tests - (propagated-inputs - `(("libarchive" ,libarchive))) + (lambda* (#:key inputs tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) + (native-inputs `(("python-pytest" ,python-pytest))) + (inputs `(("libarchive" ,libarchive))) (home-page "https://github.com/markokr/rarfile") (synopsis "RAR archive reader for Python") (description "This is Python module for RAR archive reading. The interface is made as zipfile like as possible.") (license license:isc))) -(define-public python2-rarfile - (package-with-python2 python-rarfile)) +(define-public python-rich + (package + (name "python-rich") + (version "10.2.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "rich" version)) + (sha256 + (base32 + "1z5m5brcdf3vndpavcqj5nl35xby4x5rfj48klhwqycfqf3g9cqp")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs tests? #:allow-other-keys) + (when tests? + (copy-recursively (string-append + (assoc-ref inputs "tests") "/tests") + "tests") + (invoke "python" "-m" "pytest" "-vv"))))))) + (propagated-inputs + `(("python-attrs" ,python-attrs) + ("python-colorama" ,python-colorama) + ("python-commonmark" ,python-commonmark) + ("python-ipywidgets" ,python-ipywidgets) + ("python-pygments" ,python-pygments) + ("python-typing-extensions" ,python-typing-extensions))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("tests" + ;; The release on pypi comes without tests. We can't build from this + ;; checkout, though, because installation requires an invocation of + ;; poetry. + ,(origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/willmcgugan/rich") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "19f4svb363sn5708qkpa6lakmiwzyb25h8kmh7bqrsbbrvi9hr70")))))) + (home-page "https://github.com/willmcgugan/rich") + (synopsis "Render rich text and more to the terminal") + (description + "This is a Python package for rendering rich text, tables, progress bars, +syntax highlighting, markdown and more to the terminal.") + (license license:expat))) (define-public python-magic (package @@ -13008,39 +14562,25 @@ respectively.") Python. It generates C++ code and a Makefile.")) (license (list license:gpl3 license:bsd-3 license:expat)))) -(define-public python2-rope +(define-public python-rope (package - (name "python2-rope") - (version "0.11.0") + (name "python-rope") + (version "0.19.0") (source (origin - (method url-fetch) - (uri (pypi-uri "rope" version)) - (sha256 + (method url-fetch) + (uri (pypi-uri "rope" version)) + (sha256 (base32 - "1cppm0pa9aqgsbkq130lskrzmrvjs5vpiavjjbhpz2fdw52w8251")))) - (arguments - ;; Rope has only partial python3 support, see `python-rope' - `(#:python ,python-2)) + "1nlhkmsfvn2p1msrmwqnypnvr993alzawnpc1605q7rfad3xgrk4")))) (build-system python-build-system) - (native-inputs - `(("python2-unittest2" ,python2-unittest2))) (home-page "https://github.com/python-rope/rope") (synopsis "Refactoring library for Python") (description "Rope is a refactoring library for Python. It facilitates the renaming, moving and extracting of attributes, functions, modules, fields and parameters in Python 2 source code. These refactorings can also be applied to occurrences in strings and comments.") - (license license:gpl2))) - -(define-public python-rope - (package/inherit python2-rope - (name "python-rope") - (arguments `(#:python ,python-wrapper - ;; XXX: Only partial python3 support, results in some failing - ;; tests: <https://github.com/python-rope/rope/issues/247>. - #:tests? #f)) - (properties `((python2-variant . ,(delay python2-rope)))))) + (license license:lgpl3+))) (define-public python-py3status (package @@ -13075,29 +14615,6 @@ functionality in a modular way, allowing you to extend your panel with your own code, responding to click events and updating clock every second.") (license license:bsd-3))) -(define-public python2-selectors2 - (package - (name "python2-selectors2") - (version "2.0.1") - (source (origin - (method url-fetch) - (uri (pypi-uri "selectors2" version)) - (sha256 - (base32 - "110qr00b9axz1f1jm12b495jkvrz80smknxvssqlhwk0dx67rdw1")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2)) - (native-inputs - `(("python2-mock" ,python2-mock) - ("python2-psutil" ,python2-psutil))) - (home-page "https://www.github.com/SethMichaelLarson/selectors2") - (synopsis "Backport of the selectors module from Python 3.5+") - (description - "This package provides a drop-in replacement for the @code{selectors} -module in Python 3.5 and later.") - (license license:expat))) - (define-public python-tblib (package (name "python-tblib") @@ -13141,16 +14658,47 @@ multiple processes (imagine multiprocessing, billiard, futures, celery etc). (define-public python2-tblib (package-with-python2 python-tblib)) +(define-public python-tftpy + (package + (name "python-tftpy") + (version "0.8.2") + (source + (origin + (method git-fetch) ;no tests in PyPI archive + (uri (git-reference + (url "https://github.com/msoulier/tftpy") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1gl04ps8h8r7av3h0zbm8gwmkqs9rkk5vf7n8mv2bzrkwvy9hacc")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + ;; The default DEBUG logging level is way too verbose. + (substitute* "t/test.py" + (("logging\\.DEBUG") + "logging.INFO")) + (invoke "python" "-m" "unittest" "t/test.py"))))))) + (home-page "http://tftpy.sourceforge.net/") + (synopsis "Python trivial file transfer protocol (TFTP) library") + (description "TFTPy is a trivial file transfer protocol (TFTP) Python +library. It can be used to act both as a TFTP client or TFTP server.") + (license license:expat))) + (define-public python-greenlet (package (name "python-greenlet") - (version "1.0.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (pypi-uri "greenlet" version)) (sha256 (base32 - "1y6wbg9yhm9dw6m768n4yslp56h85pnxkk3drz6icn15g6f1d7ki")))) + "10gllbrcbazxck84nr7dw3js3gq0rxrsr4kkvy5hg542rms2gwn0")))) (build-system python-build-system) (home-page "https://greenlet.readthedocs.io/") (synopsis "Lightweight in-process concurrent programming") @@ -13334,9 +14882,6 @@ graphviz.") format.") (license license:gpl2+))) -(define-public python2-fastimport - (package-with-python2 python-fastimport)) - (define-public python-twisted (package (name "python-twisted") @@ -13364,23 +14909,43 @@ format.") focus on event-based network programming and multiprotocol integration.") (license license:expat))) -(define-public python2-twisted - (package-with-python2 python-twisted)) - (define-public python-pika (package (name "python-pika") - (version "0.12.0") + (version "1.2.0") (source (origin - (method url-fetch) - (uri (pypi-uri "pika" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/pika/pika") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0ld7akgm93s8pfa4dsx9qlzlhj76zspbr5m9ms0ns09yd2w4aq9h")))) + "0cm45xydk2jigydwszwik89qlbk6l3l18sxhzppzqmxw2rdkm22s")))) (build-system python-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (add-before 'check 'disable-live-tests + (lambda _ + ;; Disable tests that require RabbitMQ, which is not + ;; yet available in Guix. + (substitute* "setup.cfg" + (("tests/unit,tests/acceptance") + "tests/unit")) + (with-directory-excursion "tests" + (for-each delete-file + '("unit/base_connection_tests.py" + "unit/threaded_test_wrapper_test.py"))))) + (replace 'check + (lambda _ + (invoke "nosetests")))))) (native-inputs - `(("python-pyev" ,python-pyev) + `(("python-mock" ,python-mock) + ("python-nose" ,python-nose) + + ;; These are optional at runtime, and provided here for tests. + ("python-gevent" ,python-gevent) ("python-tornado" ,python-tornado) ("python-twisted" ,python-twisted))) (home-page "https://pika.readthedocs.org") @@ -13391,9 +14956,6 @@ Protocol) 0-9-1 protocol that tries to stay fairly independent of the underlying network support library.") (license license:bsd-3))) -(define-public python2-pika - (package-with-python2 python-pika)) - (define-public python-ply (package (name "python-ply") @@ -13974,13 +15536,13 @@ until the object is actually required, and caches the result of said call.") (define-public python-dnspython (package (name "python-dnspython") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (pypi-uri "dnspython" version ".zip")) (sha256 (base32 - "1dyip5ygqqhrgcaiy7qzjpndl9xciip186paxqwkm726fj9z0jh4")))) + "1m0xvyby8baaxp6pfm0fgq8d2pq5dd8qm8bzfbrs009jaw5pza74")))) (build-system python-build-system) (native-inputs `(("unzip" ,unzip))) (arguments '(#:tests? #f)) ; XXX: requires internet access @@ -14200,13 +15762,13 @@ collections of data.") (define-public python-prompt-toolkit (package (name "python-prompt-toolkit") - (version "3.0.9") + (version "3.0.18") (source (origin (method url-fetch) (uri (pypi-uri "prompt_toolkit" version)) (sha256 - (base32 "0bvjp62cs6aj9lrh7njzxdjgg8pjfw3qgmr551243d9ivmcapvn5")))) + (base32 "1g1kq1aimhm23k2dmlmnznfzc83l6ly65g0h32hqz8injcdz3d71")))) (build-system python-build-system) (arguments `(#:phases @@ -14310,18 +15872,19 @@ well.") (define-public ptpython (package (name "ptpython") - (version "3.0.5") + (version "3.0.17") (source (origin (method url-fetch) (uri (pypi-uri "ptpython" version)) (sha256 (base32 - "0c2ry5gwi2v99slna62j8r2bwq0hpzmvgdryqg9m6x57vbjfg52h")))) + "1phk1grcvn456igjg8gwjjg8bf4kszddq5nd5sdlz3hslg62a7ci")))) (build-system python-build-system) (arguments - '(#:tests? #f)) ; FIXME: No tests in pypi tarball. + `(#:tests? #f)) ;there are no tests (propagated-inputs `(("python-appdirs" ,python-appdirs) + ("python-black" ,python-black) ("python-jedi" ,python-jedi) ("python-prompt-toolkit" ,python-prompt-toolkit) ("python-pygments" ,python-pygments))) @@ -14340,6 +15903,80 @@ etc.") (package/inherit base (name "ptpython2")))) +(define-public python-easyprocess + (package + (name "python-easyprocess") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "EasyProcess" version)) + (sha256 + (base32 "115rzzr0hx4af4m6krf7dxn8851n4l8jfxahjzjc2r0zq2m8v57v")))) + (build-system python-build-system) + (arguments + ;; Tests require pyvirtualdisplay, which requires this package. + `(#:tests? #f)) + (home-page "https://github.com/ponty/easyprocess") + (synopsis "Python subprocess interface") + (description + "@code{easyprocess} is an easy to use Python subprocess interface.") + (license license:bsd-3))) + +(define-public python-entrypoint2 + (package + (name "python-entrypoint2") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "entrypoint2" version)) + (sha256 + (base32 "1qyxq54r2fbh09ab5sffbxajy8arbk6czxz5lq3ccr9qrypw6w27")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest")) + (native-inputs + `(("python-easyprocess" ,python-easyprocess) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (home-page "https://github.com/ponty/entrypoint2") + (synopsis "Command-line interface for Python modules") + (description + "@code{entrypoint2} is an easy to use command-line interface for Python +modules based on @code{argparse}. It translates function signature and +documentation to argparse configuration.") + (license license:bsd-3))) + +(define-public python-pyvirtualdisplay + (package + (name "python-pyvirtualdisplay") + (version "2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyVirtualDisplay" version)) + (sha256 + (base32 "1z2fzgiw3xv3m1d9ppn53g07zhnpj05addiz56sm6ircxibnjk4x")))) + (build-system python-build-system) + (arguments + ;; Tests fail with: + ;; FileNotFoundError: [Errno 2] No such file or directory: 'Xvnc'. + `(#:tests? #f)) + (native-inputs + `(("python-entrypoint2" ,python-entrypoint2) + ("python-psutil" ,python-psutil) + ("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-easyprocess" ,python-easyprocess) + ("python-pillow" ,python-pillow))) + (home-page "https://github.com/ponty/pyvirtualdisplay") + (synopsis "Python wrapper for Xvfb, Xephyr and Xvnc") + (description + "@code{pyvirtualdisplay} is a Python wrapper for Xvfb, Xephyr and Xvnc.") + (license license:bsd-3))) + (define-public python-stem (package (name "python-stem") @@ -14402,6 +16039,92 @@ and/or Xon/Xoff. The port is accessed in RAW mode.") (define-public python2-pyserial (package-with-python2 python-pyserial)) +(define-public python-pyserial-asyncio + (package + (name "python-pyserial-asyncio") + (version "0.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyserial-asyncio" version)) + (sha256 + (base32 "0cwd2cjz859v6jrm3y6hikfqjyhyfj5vhfjb8vvflvl6791yah8n")))) + (build-system python-build-system) + (propagated-inputs `(("python-pyserial" ,python-pyserial))) + (home-page "https://github.com/pyserial/pyserial-asyncio") + (synopsis "Pyserial asynchronous I/O extension") + (description "This package extends Pyserial with asynchronous I/O +support.") + (license license:bsd-3))) + +(define-public python-pymodbus + (package + (name "python-pymodbus") + (version "2.5.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/riptideio/pymodbus") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "009blvzi56434f0qfjdg3r8q1flb1jcx2786wi0i0xf81025z9cf")))) + (build-system python-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'disable-problematic-tests + (lambda _ + ;; The following test module rely on Python's own 'test' + ;; module, which is not distributed in the Python + ;; package of Guix. + (delete-file "test/test_client_async_asyncio.py") + (delete-file "test/test_client_sync_diag.py"))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest"))))))) + (native-inputs + `(("python-asynctest" ,python-asynctest) + ("python-mock" ,python-mock) + ("python-pytest" ,python-pytest) + ("python-redis" ,python-redis) + ("python-sqlalchemy" ,python-sqlalchemy) + ("python-tornado" ,python-tornado) + ("python-twisted" ,python-twisted))) + (propagated-inputs + `(("python-pyserial" ,python-pyserial) + ("python-six" ,python-six) + ;; For the REPL. + ("python-aiohttp" ,python-aiohttp) + ("python-click" ,python-click) + ("python-prompt-toolkit" ,python-prompt-toolkit) + ("python-pygments" ,python-pygments) + ("python-pyserial-asyncio" ,python-pyserial-asyncio))) + (home-page "https://github.com/riptideio/pymodbus/") + (synopsis "Modbus protocol stack in Python") + (description "Pymodbus is a full Modbus protocol implementation using +@code{asyncio}, @code{tornado} or @code{twisted} for its asynchronous +communications core. It includes the following @emph{client} features: +@itemize +@item full read/write protocol on discrete and register +@item most of the extended protocol (diagnostic/file/pipe/setting/information) +@item TCP, UDP, Serial ASCII, Serial RTU, and Serial Binary +@item asynchronous and synchronous versions +@item payload builder/decoder utilities +@item pymodbus read eval print loop (REPL). +@end itemize +It also includes the following @emph{server} features: +@itemize +@item can function as a fully implemented Modbus server +@item TCP, UDP, Serial ASCII, Serial RTU, and Serial Binary +@item asynchronous and synchronous versions +@item full server control context (device information, counters, etc) +@item a number of backing contexts (database, redis, sqlite, a slave device). +@end itemize") + (license license:bsd-3))) + (define-public python-kivy (package (name "python-kivy") @@ -14520,18 +16243,25 @@ extracting firmware images") (define-public python-nltk (package (name "python-nltk") - (version "3.2.1") + (version "3.6.2") (source (origin (method url-fetch) - (uri (pypi-uri "nltk" version)) + (uri (pypi-uri "nltk" version ".zip")) (sha256 (base32 - "0skxbhnymwlspjkzga0f7x1hg3y50fwpfghs8g8k7fh6f4nknlym")))) + "1sq32lwgij9h8rsksymnxxr7bqfw3vgx5ijw4azbj6k2xnmmdmap")))) (build-system python-build-system) (arguments '(;; The tests require some extra resources to be downloaded. ;; TODO Try packaging these resources. #:tests? #f)) + (propagated-inputs + `(("python-click" ,python-click) + ("python-joblib" ,python-joblib) + ("python-regex" ,python-regex) + ("python-tqdm" ,python-tqdm))) + (native-inputs + `(("unzip" ,unzip))) (home-page "http://nltk.org/") (synopsis "Natural Language Toolkit") (description "It provides interfaces to over 50 corpora and lexical @@ -14540,6 +16270,20 @@ for classification, tokenization, stemming, tagging, parsing, and semantic reasoning, wrappers for natural language processing libraries.") (license license:asl2.0))) +;; Versions >=3.5 breaks backward-compatibility, +;; so we keep version 3.4.x around for a while. +(define-public python-nltk-3.4 + (package + (inherit python-nltk) + (version "3.4.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "nltk" version ".zip")) + (sha256 + (base32 "153x2clrnigs74jdgnn3qmljdjj4gprmvpdvh49i18ls4m8mbm5y")))) + (propagated-inputs `(("python-six" ,python-six))))) + (define-public python2-nltk (package-with-python2 python-nltk)) @@ -14657,13 +16401,13 @@ Python to manipulate OpenDocument 1.2 files.") (define-public python-natsort (package (name "python-natsort") - (version "7.0.1") + (version "7.1.1") (source (origin (method url-fetch) (uri (pypi-uri "natsort" version)) (sha256 (base32 - "1ksqfai72dbcfbwx43pxl658j59mx2rvqypjy1fk0ax2qd6lccx6")))) + "00y49bfsi7rrsd1s42gc2w95a6arl9ipdsx2493hr0v54fj07ih0")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -14673,9 +16417,6 @@ Python to manipulate OpenDocument 1.2 files.") (ice-9 ftw)) #:phases (modify-phases %standard-phases - (add-before 'check 'set-cachedir - ;; Tests require write access to $HOME by default - (lambda _ (setenv "PYTHON_EGG_CACHE" "/tmp") #t)) (replace 'check (lambda _ (let ((cwd (getcwd))) @@ -14705,34 +16446,18 @@ on a list such as @code{[@code{a20}, @code{a9}, @code{a1}, @code{a4}, identifies numbers and sorts them separately from strings. It can also sort version numbers, real numbers, mixed types and more, and comes with a shell command @command{natsort} that exposes this functionality in the command line.") - (license license:expat) - (properties `((python2-variant . ,(delay python2-natsort)))))) - -;; Natsort 6.x are the last versions with support for Python 2. -(define-public python2-natsort - (let ((base (package-with-python2 (strip-python2-variant python-natsort)))) - (package (inherit base) - (version "6.2.1") - (source (origin - (method url-fetch) - (uri (pypi-uri "natsort" version)) - (sha256 - (base32 - "1mc9hbh6fv76xyz13frm7dgi05cf74f9j5wvcyjiy5234gylz565")))) - (native-inputs - `(("python2-pathlib" ,python2-pathlib) - ,@(package-native-inputs base)))))) + (license license:expat))) (define-public glances (package (name "glances") - (version "3.1.6") + (version "3.1.7") (source (origin (method url-fetch) (uri (pypi-uri "Glances" version)) (sha256 - (base32 "11xbm8jgcxha191ly7q76nab1ilabiz14mqf6i3y6aw5xvgg017c")) + (base32 "020vb38qrb0m3sdr7xjr43cmcfxpnyg4hmb97wgxsa9zvwsjwa5x")) (modules '((guix build utils))) (snippet '(begin @@ -14799,21 +16524,19 @@ to Python.") (define-public python-graphql-relay (package (name "python-graphql-relay") - (version "0.4.5") + (version "3.1.0") (source (origin (method url-fetch) (uri (pypi-uri "graphql-relay" version)) (sha256 (base32 - "1nv5dxcj59zv31qvl8bd142njmxcmymny2dz3br1l2cpbljbf5i7")))) + "1d70vwam9gjhx7fqzsa03x7lc6ivcqki5r9pk8m7rslmb7pagmbh")))) (build-system python-build-system) (arguments '(#:tests? #f)) ; The tests are not distributed (propagated-inputs - `(("python-graphql-core" ,python-graphql-core) - ("python-promise" ,python-promise) - ("python-six" ,python-six))) + `(("python-graphql-core" ,python-graphql-core))) (home-page "https://github.com/graphql-python/graphql-relay-py") (synopsis "Relay implementation for Python") (description @@ -15556,17 +17279,41 @@ converting text with ANSI color codes to HTML or LaTeX.") (define-public python2-ansi2html (package-with-python2 python-ansi2html)) +(define-public python-easy-ansi + (package + (name "python-easy-ansi") + (version "0.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/joeysbytes/easy-ansi") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0albh55ynzs98qy9pln4qaxw5qhhh3lk09jy9bx19gycrp1c3lc3")))) + (build-system python-build-system) + (home-page "https://gitlab.com/joeysbytes/easy-ansi") + (synopsis "Terminal framework API") + (description + "Easy ANSI is a terminal framework API to give you an easy way to use +colors, cursor control movements, and line/box drawing. It is not meant as a +replacement to more full-featured frameworks (such as curses or urwid), but as +a tool to quickly create nice-looking screens in your terminal window. You +can even create animations with the cursor controls.") + (license license:expat))) + (define-public python-ddt (package (name "python-ddt") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (pypi-uri "ddt" version)) (sha256 (base32 - "1niqpzc26sxdbyi46r07n4pma5fjx6crww2539vpfmsf0w6yg585")))) + "0y2k756qjz1rhpivi60hy29b4bf0bh3wck39i1mn6pkil9k779k4")))) (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest))) @@ -15837,13 +17584,13 @@ and bit flag values.") (define-public python-attrs (package (name "python-attrs") - (version "19.3.0") + (version "21.2.0") (source (origin (method url-fetch) (uri (pypi-uri "attrs" version)) (sha256 (base32 - "0wky4h28n7xnr6xv69p9z6kv8bzn50d10c3drmd9ds8gawbcxdzp")))) + "1yzmwi5d197p0qhl7rl4xi9q1w8mk9i3zn6hrl22knbcrb1slspg")))) (build-system python-build-system) (arguments `(#:modules ((guix build utils) @@ -15851,18 +17598,20 @@ and bit flag values.") (ice-9 ftw) (srfi srfi-1) (srfi srfi-26)) - #:phases (modify-phases %standard-phases - (replace 'check - (lambda _ - (let ((cwd (getcwd))) - (setenv "PYTHONPATH" - (string-append - cwd "/build/" - (find (cut string-prefix? "lib" <>) - (scandir (string-append cwd "/build"))) - ":" - (getenv "PYTHONPATH"))) - (invoke "python" "-m" "pytest"))))))) + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append + cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH"))) + (invoke "python" "-m" "pytest")))))))) (native-inputs `(("python-coverage" ,python-coverage) ("python-hypothesis" ,python-hypothesis) @@ -15885,15 +17634,22 @@ protocols.") (package (inherit python-attrs) (name "python-attrs-bootstrap") + (version "19.3.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "attrs" version)) + (sha256 + (base32 + "0wky4h28n7xnr6xv69p9z6kv8bzn50d10c3drmd9ds8gawbcxdzp")))) (native-inputs `()) (arguments `(#:tests? #f)))) (define-public python2-attrs-bootstrap (package-with-python2 python-attrs-bootstrap)) -(define-public python2-cliapp +(define-public python-cliapp (package - (name "python2-cliapp") + (name "python-cliapp") (version "1.20180812.1") (source (origin @@ -15906,35 +17662,27 @@ protocols.") "1c1jlblbns8qhiaqjpg4xi6lip8xwfc5w643p43rg543havaj45x")))) (build-system python-build-system) (arguments - `(#:python ,python-2 - #:phases - (modify-phases %standard-phases - ;; check phase needs to be run before the build phase. If not, - ;; coverage-test-runner looks for tests for the built source files, - ;; and fails. - (delete 'check) - (add-before 'build 'check - (lambda _ - ;; Disable python3 tests - (substitute* "check" - (("python3") "# python3")) - (invoke "./check")))))) + `(;; XXX: The tests only do style and coverage checks, which + ;; fails due to deprecation warnings, etc. + #:tests? #f)) (native-inputs - `(("python2-coverage-test-runner" ,python2-coverage-test-runner) - ("python2-pep8" ,python2-pep8))) + `(("python-coverage-test-runner" ,python-coverage-test-runner) + ("python-pep8" ,python-pep8))) (propagated-inputs - `(("python2-pyaml" ,python2-pyaml))) + `(("python-pyaml" ,python-pyaml))) (home-page "https://liw.fi/cliapp/") (synopsis "Python framework for command line programs") - (description "@code{python2-cliapp} is a python framework for -command line programs. It contains the typical stuff such programs -need to do, such as parsing the command line for options, and -iterating over input files.") + (description "@code{cliapp} is a Python framework for command line +programs. It contains the typical stuff such programs need to do, such +as parsing the command line for options, and iterating over input files.") (license license:gpl2+))) -(define-public python2-ttystatus +(define-public python2-cliapp + (package-with-python2 python-cliapp)) + +(define-public python-ttystatus (package - (name "python2-ttystatus") + (name "python-ttystatus") (version "0.38") (source (origin @@ -15948,11 +17696,10 @@ iterating over input files.") (file-name (git-file-name name version)))) (build-system python-build-system) (native-inputs - `(("python2-coverage-test-runner" ,python2-coverage-test-runner) - ("python2-pep8" ,python2-pep8))) + `(("python-coverage-test-runner" ,python-coverage-test-runner) + ("python-pep8" ,python-pep8))) (arguments - `(#:python ,python-2 - #:phases + `(#:phases (modify-phases %standard-phases ;; check phase needs to be run before the build phase. If not, ;; coverage-test-runner looks for tests for the built source files, @@ -15963,13 +17710,15 @@ iterating over input files.") (home-page "https://liw.fi/ttystatus/") (synopsis "Python library for showing progress reporting and status updates on terminals") - (description "@code{python2-ttystatus} is a python library for -showing progress reporting and status updates on terminals, for -command line programs. Output is automatically adapted to the width -of the terminal: truncated if it does not fit, and resized if the -terminal size changes.") + (description "@code{ttystatus} is a Python library for showing progress +reporting and status updates on terminals, for command line programs. +Output is automatically adapted to the width of the terminal: truncated +if it does not fit, and resized if the terminal size changes.") (license license:gpl3+))) +(define-public python2-ttystatus + (package-with-python2 python-ttystatus)) + (define-public python2-tracing (package (name "python2-tracing") @@ -15996,50 +17745,6 @@ matters when code is run in production mode. The actual logging still happens using the @code{logging} library.") (license license:gpl3+))) -(define-public python2-larch - (package - (name "python2-larch") - (version "1.20151025") - (source - (origin - (method url-fetch) - (uri (string-append - "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/larch/snapshot/larch-" - version ".tar.gz")) - (patches (search-patches - "python2-larch-coverage-4.0a6-compatibility.patch")) - (sha256 - (base32 - "1p4knkkavlqymgciz2wbcnfrdgdbafhg14maplnk4vbw0q8xs663")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 - #:phases - (modify-phases %standard-phases - ;; check phase needs to be run before the build phase. If not, - ;; coverage-test-runner looks for tests for the built source files, - ;; and fails. - (delete 'check) - (add-before 'build 'check - (lambda _ (invoke "make" "check")))))) - (native-inputs - `(("cmdtest" ,cmdtest) - ("python2-coverage-test-runner" ,python2-coverage-test-runner))) - (propagated-inputs - `(("python2-tracing" ,python2-tracing))) - (home-page "https://liw.fi/larch/") - (synopsis "Python copy-on-write B-tree library") - (description "@code{python2-larch} is an implementation of -particular kind of B-tree, based on research by Ohad Rodeh. See -@url{http://liw.fi/larch/ohad-btrees-shadowing-clones.pdf} for details -on the data structure. - -The distinctive feature of this B-tree is that a node is never -(conceptually) modified. Instead, all updates are done by -copy-on-write. This makes it easy to clone a tree, and modify only the -clone, while other processes access the original tree.") - (license license:gpl3+))) - (define-public python-astroid (package (name "python-astroid") @@ -16315,39 +18020,6 @@ applications in seconds while maintaining all the flexibility.") older Pythons because it was not part of the standard library back then.") (license license:psfl))) -(define-public python-fudge - (package - (name "python-fudge") - ;; 0.9.6 is the latest version suitable for testing the "fabric" Python 2 - ;; package, which is currently the only use of this package. - (version "0.9.6") - (source - (origin - (method url-fetch) - (uri (pypi-uri "fudge" version)) - (sha256 - (base32 - "185ia3vr3qk4f2s1a9hdxb8ci4qc0x0xidrad96pywg8j930qs9l")))) - (build-system python-build-system) - (arguments - `(#:tests? #f)) ;XXX: Tests require the NoseJS Python package. - (home-page "https://github.com/fudge-py/fudge") - (synopsis "Replace real objects with fakes/mocks/stubs while testing") - (description - "Fudge is a Python module for using fake objects (mocks and stubs) to -test real ones. - -In readable Python code, you declare the methods available on your fake object -and how they should be called. Then you inject that into your application and -start testing. This declarative approach means you don’t have to record and -playback actions and you don’t have to inspect your fakes after running code. -If the fake object was used incorrectly then you’ll see an informative -exception message with a traceback that points to the culprit.") - (license license:expat))) - -(define-public python2-fudge - (package-with-python2 python-fudge)) - (define-public python-mwclient (package (name "python-mwclient") @@ -16673,14 +18345,14 @@ information.") (define-public python-relatorio (package (name "python-relatorio") - (version "0.8.0") + (version "0.10.0") (source (origin (method url-fetch) (uri (pypi-uri "relatorio" version)) (sha256 (base32 - "1na6hlhz1awi1hbjg1gyclq0khz42iz90wvdjw7mmj655788bpxx")))) + "09nhrz80dfm60nssbvjgz4czzy4yzfa8gxczcdlzbgcnnvm914vb")))) (build-system python-build-system) (propagated-inputs `(("python-lxml" ,python-lxml) @@ -17029,16 +18701,8 @@ validation of URIs (see RFC 3986) and IRIs (see RFC 3987).") "Python implementation of the Happy Eyeballs Algorithm described in RFC 6555. Provided with a single file and dead-simple API to allow easy vendoring and integration into other projects.") - (properties `((python2-variant . ,(delay python2-rfc6555)))) (license license:asl2.0)))) -(define-public python2-rfc6555 - (let ((base (package-with-python2 - (strip-python2-variant python-rfc6555)))) - (package/inherit base - (propagated-inputs - `(("python2-selectors2" ,python2-selectors2)))))) - (define-public python-bagit (package (name "python-bagit") @@ -17377,9 +19041,6 @@ from your Flask project. It is a fork of Flask-Swagger.") validating Swagger API specifications.") (license license:asl2.0))) -(define-public python2-swagger-spec-validator - (package-with-python2 python-swagger-spec-validator)) - (define-public python-apache-libcloud (package (name "python-apache-libcloud") @@ -18363,6 +20024,50 @@ and works only with Python 2 and NumPy < 1.9.") (define-public python2-phonenumbers (package-with-python2 python-phonenumbers)) +(define-public python-heapdict + (package + (name "python-heapdict") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "HeapDict" version)) + (sha256 + (base32 + "1dnd7v9adqd21bf4ih2wzn9a7b41m0nccb0vbxny9n037rxzb5c4")))) + (build-system python-build-system) + (home-page "http://stutzbachenterprises.com/") + (synopsis "Heap with decrease-key and increase-key operations") + (description + "heapdict implements the MutableMapping ABC, meaning it works pretty much +like a regular Python @code{dict}. It’s designed to be used as a priority +queue.") + (license license:bsd-3))) + +(define-public python-zict + (package + (name "python-zict") + (version "2.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "zict" version)) + (sha256 + (base32 + "05pd1hyhqvpw87rnbvl3vdyf619snpyccbswaxisdj17frwnjacf")))) + (build-system python-build-system) + (propagated-inputs + `(("python-heapdict" ,python-heapdict))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://zict.readthedocs.io/en/latest/") + (synopsis "Composable mutable mapping tools") + (description "This package provides abstract @code{MutableMapping} classes +that consume and build on other @code{MutableMappings}. Several of these can +be composed with one another to form intuitive interfaces over complex storage +systems policies.") + (license license:bsd-3))) + (define-public python-send2trash (package (name "python-send2trash") @@ -19522,7 +21227,7 @@ user-space file systems in Python.") (define-public pybind11 (package (name "pybind11") - (version "2.6.1") + (version "2.6.2") (source (origin (method git-fetch) (uri (git-reference @@ -19530,7 +21235,7 @@ user-space file systems in Python.") (commit (string-append "v" version)))) (sha256 (base32 - "1wh5b1xnywzxwxkyac2wvyqwzmy1qxs341jjk820r7b825wn6yad")) + "1lsacpawl2gb5qlh0cawj9swsyfbwhzhwiv6553a7lsigdbadqpy")) (file-name (git-file-name name version)))) (build-system cmake-build-system) (native-inputs @@ -19716,6 +21421,43 @@ Public Suffix List's private domains as well.") (define-public python2-tldextract (package-with-python2 python-tldextract)) +(define-public python-tldr + (package + (name "python-tldr") + (version "1.2.1") + (source + (origin + ;; There's no test in PyPI. + (method git-fetch) + (uri (git-reference + (url "https://github.com/tldr-pages/tldr-python-client") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0n9wqvjxspm18vlxf9j9slrcydshk4rkv5nwkrqhfq606n6zvks4")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; This test fails. It tries to open a network socket. + (invoke "pytest" "-vv" "-k" "not test_error_message"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-runner" ,python-pytest-runner))) + (inputs + `(("python-argcomplete" ,python-argcomplete) + ("python-colorama" ,python-colorama) + ("python-termcolor" ,python-termcolor))) + (home-page "https://github.com/tldr-pages/tldr-python-client") + (synopsis "Python command-line client for tldr pages") + (description "This package provides the @code{tldr} command allowing users +to view @code{tldr} pages from a shell. The @code{tldr} pages are a community +effort to simplify the man pages with practical examples.") + (license license:expat))) ; MIT license + (define-public python-nodeenv (package (name "python-nodeenv") @@ -19997,28 +21739,45 @@ N-dimensional arrays for Python.") (define-public python-anndata (package (name "python-anndata") - (version "0.7.1") + (version "0.7.6") (source (origin - (method url-fetch) - (uri (pypi-uri "anndata" version)) + ;; The tarball from PyPi doesn't include tests. + (method git-fetch) + (uri (git-reference + (url "https://github.com/theislab/anndata") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09")))) + "1q30bsfsq9xfqm8nmabg3bjh9gix3yng0170xiiyw1lin4xncf0q")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'delete-inconvenient-tests - (lambda _ - ;; This test depends on python-scikit-learn. - (delete-file "anndata/tests/test_inplace_subset.py") - #t)) (delete 'check) - (add-after 'install 'check + (add-before 'build 'relax-dependency-requirements + (lambda _ + ;; We need to upgrade python-pandas to avoid + ;; https://github.com/pandas-dev/pandas/issues/35446 + (substitute* "pyproject.toml" + (("pandas>=1.1.1") "pandas>=1.0.5")))) + (replace 'build + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" ,version) + ;; ZIP does not support timestamps before 1980. + (setenv "SOURCE_DATE_EPOCH" "315532800") + (invoke "flit" "build"))) + (replace 'install (lambda* (#:key inputs outputs #:allow-other-keys) (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-vv")))))) + (let ((out (assoc-ref outputs "out"))) + (for-each (lambda (wheel) + (format #true wheel) + (invoke "python" "-m" "pip" "install" + wheel (string-append "--prefix=" out))) + (find-files "dist" "\\.whl$"))) + #t))))) (propagated-inputs `(("python-h5py" ,python-h5py) ("python-importlib-metadata" ,python-importlib-metadata) @@ -20031,6 +21790,8 @@ N-dimensional arrays for Python.") (native-inputs `(("python-joblib" ,python-joblib) ("python-pytest" ,python-pytest) + ("python-toml" ,python-toml) + ("python-flit" ,python-flit) ("python-setuptools-scm" ,python-setuptools-scm))) (home-page "https://github.com/theislab/anndata") (synopsis "Annotated data for data analysis pipelines") @@ -20120,18 +21881,26 @@ library's @code{threading} module.") (define-public python-toolz (package (name "python-toolz") - (version "0.9.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (pypi-uri "toolz" version)) (sha256 (base32 - "1j9i7fdjnx9dz35fdj5gvgxx6585ja9sxgaiv65if77nlxz0m7wj")))) + "1grz3zvw5ixwqqlbv0n7j11mlcxb66cirh5i9x9zw8kqy0hpk967")))) (build-system python-build-system) - ;; FIXME: tests cannot be computed: "Can't perform this operation for - ;; unregistered loader type" - (arguments '(#:tests? #f)) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "--doctest-modules" + "--pyargs" "toolz"))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) (home-page "https://github.com/pytoolz/toolz/") (synopsis "List processing tools and functional utilities") (description @@ -20139,9 +21908,6 @@ library's @code{threading} module.") functions, and dictionaries.") (license license:bsd-3))) -(define-public python2-toolz - (package-with-python2 python-toolz)) - (define-public python-cytoolz (package (name "python-cytoolz") @@ -20220,39 +21986,63 @@ pure-Python.") (define-public python2-sortedcontainers (package-with-python2 python-sortedcontainers)) -(define-public python-cloudpickle +(define python-cloudpickle-testpkg (package - (name "python-cloudpickle") - (version "1.3.0") + (name "python-cloudpickle-testpkg") + (version "1.6.0") (source (origin - (method url-fetch) - (uri (pypi-uri "cloudpickle" version)) + ;; Archive on pypi does not include test infrastructure. + (method git-fetch) + (uri (git-reference + (url "https://github.com/cloudpipe/cloudpickle") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "0lx7gy9clp427qwcm7b23zdsldpr03gy3vxxhyi8fpbhwz859brq")))) + "1584d21d4rcpryn8yfz0pjnjprk4zm367m0razdcz8cjbsh0dxp6")))) (build-system python-build-system) (arguments - '(#:phases (modify-phases %standard-phases - (add-before 'check 'do-not-override-PYTHONPATH - (lambda _ - ;; Append to PYTHONPATH instead of overriding it so - ;; that dependencies from Guix can be found. - (substitute* "tests/testutils.py" - (("env\\['PYTHONPATH'\\] = pythonpath") - "env['PYTHONPATH'] += os.pathsep + pythonpath")) - #t)) - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (if tests? - (invoke "pytest" "-s" "-vv") - (format #t "test suite not run~%")) - #t))))) + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "tests/cloudpickle_testpkg")))))) + (home-page "https://github.com/cloudpipe/cloudpickle") + (synopsis "Extended pickling support for Python objects") + (description + "Cloudpickle makes it possible to serialize Python constructs not +supported by the default pickle module from the Python standard library. It +is especially useful for cluster computing where Python expressions are +shipped over the network to execute on remote hosts, possibly close to the +data.") + (license license:bsd-3))) + +(define-public python-cloudpickle + (package + (inherit python-cloudpickle-testpkg) + (name "python-cloudpickle") + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'check 'do-not-override-PYTHONPATH + (lambda _ + ;; Append to PYTHONPATH instead of overriding it so + ;; that dependencies from Guix can be found. + (substitute* "tests/testutils.py" + (("env\\['PYTHONPATH'\\] = pythonpath") + "env['PYTHONPATH'] += os.pathsep + pythonpath")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (if tests? + (invoke "pytest" "-s" "-vv") + (format #t "test suite not run~%"))))))) (native-inputs `(;; For tests. + ("python-cloudpickle-testpkg" ,python-cloudpickle-testpkg) ("python-psutil" ,python-psutil) ("python-pytest" ,python-pytest) - ("python-tornado" ,python-tornado))) + ("python-tornado" ,python-tornado-6))) (home-page "https://github.com/cloudpipe/cloudpickle") (synopsis "Extended pickling support for Python objects") (description @@ -20267,9 +22057,20 @@ data.") (define-public python2-cloudpickle (let ((base (package-with-python2 (strip-python2-variant python-cloudpickle)))) (package/inherit base + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cloudpickle" version)) + (sha256 + (base32 + "0lx7gy9clp427qwcm7b23zdsldpr03gy3vxxhyi8fpbhwz859brq")))) (native-inputs - `(("python-mock" ,python2-mock) - ,@(package-native-inputs base))) + `(;; For tests. + ("python-mock" ,python2-mock) + ("python-psutil" ,python2-psutil) + ("python-pytest" ,python2-pytest) + ("python-tornado" ,python2-tornado))) (propagated-inputs `(("python-futures" ,python2-futures) ,@(package-propagated-inputs base)))))) @@ -20333,14 +22134,14 @@ This Python package wraps the Blosc library.") (define-public python-partd (package (name "python-partd") - (version "0.3.9") + (version "1.2.0") (source (origin (method url-fetch) (uri (pypi-uri "partd" version)) (sha256 (base32 - "0sz6rwlnl4fqq220pyz863cnv0gjdxl4m7lscl71ishl5z0xkmhz")))) + "1sy3vdfyyx3bc5590zb7gwpsmimqz8m992x9hsydq8nmhixqjrxa")))) (build-system python-build-system) (propagated-inputs `(("python-blosc" ,python-blosc) @@ -20355,9 +22156,6 @@ This Python package wraps the Blosc library.") append on old values. Partd excels at shuffling operations.") (license license:bsd-3))) -(define-public python2-partd - (package-with-python2 python-partd)) - (define-public python-fsspec (package (name "python-fsspec") @@ -20383,13 +22181,13 @@ decisions with any given backend.") (define-public python-dask (package (name "python-dask") - (version "2.14.0") + (version "2021.7.1") (source (origin (method url-fetch) (uri (pypi-uri "dask" version)) (sha256 - (base32 "031j0j26s0675v0isyps2dphm03330n7dy8ifdy70jgvf78d119q")))) + (base32 "131c1bp193d7wp4gx09j6wark1c322c8sqjy22i0jaafl5rqfbz7")))) (build-system python-build-system) (arguments `(#:phases @@ -20400,14 +22198,7 @@ decisions with any given backend.") (substitute* "dask/tests/test_threaded.py" (("def test_interrupt\\(\\)" m) (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" - m))) - ;; This one fails with a type error: - ;; TypeError: Already tz-aware, use tz_convert to convert. - (substitute* "dask/dataframe/tests/test_shuffle.py" - (("def test_set_index_timestamp\\(\\)" m) - (string-append "@pytest.mark.skip(reason=\"Disabled by Guix\")\n" - m))) - #t)) + m))))) (replace 'check (lambda _ (invoke "pytest" "-vv")))))) (propagated-inputs @@ -21021,6 +22812,28 @@ processes may share the same data.") format.") (license license:expat))) +(define-public python-crontab + (package + (name "python-crontab") + (version "2.5.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri name version)) + (sha256 + (base32 "0cccrqc10r8781ba81x8r2frs3pl2m4hkm599k5358ak0xr7xgjb")))) + (build-system python-build-system) + (arguments + ;; Comptability tests fail so they are disabled. + `(#:tests? #f)) + (inputs + `(("python-dateutil" ,python-dateutil))) + (home-page "https://gitlab.com/doctormo/python-crontab/") + (synopsis "Module for reading and writing crontab files") + (description "This Python module can read, write crontab files, and +access the system cron automatically and simply using a direct API.") + (license license:lgpl3+))) + (define-public python-pylzma (package (name "python-pylzma") @@ -21197,14 +23010,14 @@ one-off scripts.") (define-public python-cached-property (package (name "python-cached-property") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (pypi-uri "cached-property" version)) (sha256 (base32 - "010m1bl380l2r3vwq24r5v14l6gwvgm9v0mqqjkjss552jgsa5wj")))) + "0c51i6yzg6dlq6zhk4c6nv33mg8gv05kkan36k9b5jzf71c7b9cz")))) (build-system python-build-system) (arguments `(#:phases @@ -21605,6 +23418,89 @@ bindings for Python 3.") standard error channel (stderr) in your program.") (license license:expat)))) +(define-public python-anyio + (package + (name "python-anyio") + (version "3.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "anyio" version)) + (sha256 + (base32 + "0x03hsprdrs86wjjkj96zm2jswy3a5bgyrknyi58pzz5hdsscmxf")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-compatibility + (lambda _ + (substitute* "tests/test_taskgroups.py" + (("import pytest") + "import pytest\nimport _pytest\nfrom _pytest import logging") + (("pytest.LogCaptureFixture") + "_pytest.logging.LogCaptureFixture")))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv" "-p" "no:asyncio" + "-m" "not network" + "-k" + (string-append + "not test_is_block_device" + + ;; These fail because of network (or specifically + ;; IPv6 network) access. + " and not test_accept" + " and not test_accept_after_close" + " and not test_close_during_receive" + " and not test_close_from_other_task" + " and not test_concurrent_receive" + " and not test_concurrent_send" + " and not test_connect_tcp_with_tls" + " and not test_connect_tcp_with_tls_cert_check_fail" + " and not test_connection_refused" + " and not test_extra_attributes" + " and not test_getaddrinfo" + " and not test_getnameinfo" + " and not test_happy_eyeballs" + " and not test_iterate" + " and not test_receive_after_close" + " and not test_receive_timeout" + " and not test_reuse_port" + " and not test_run_process" + " and not test_send_after_close" + " and not test_send_after_eof" + " and not test_send_after_peer_closed" + " and not test_send_eof" + " and not test_send_large_buffer" + " and not test_send_receive" + " and not test_socket_options")))))))) + (propagated-inputs + `(("python-idna" ,python-idna) + ("python-sniffio" ,python-sniffio) + ("python-typing-extensions" ,python-typing-extensions))) + (native-inputs + `(("python-coverage" ,python-coverage) + ("python-hypothesis" ,python-hypothesis) + ("python-iniconfig" ,python-iniconfig) + ("python-mock" ,python-mock) + ("python-pytest" ,python-pytest-6) + ("python-pytest-mock" ,python-pytest-mock) + ("python-pytest-trio" ,python-pytest-trio) + ("python-setuptools-scm" ,python-setuptools-scm) + ("python-trustme" ,python-trustme) + ("python-uvloop" ,python-uvloop))) + (home-page "https://github.com/agronholm/anyio") + (synopsis "Compatibility layer for multiple asynchronous event loops") + (description + "AnyIO is an asynchronous networking and concurrency library that works +on top of either asyncio or trio. It implements trio-like structured +concurrency on top of asyncio, and works in harmony with the native SC of trio +itself.") + (license license:expat))) + (define-public python-argh ;; There are 21 commits since the latest release containing important ;; improvements. @@ -21629,8 +23525,7 @@ standard error channel (stderr) in your program.") ("python-mock" ,python-mock) ("python-pytest" ,python-pytest) ("python-pytest-cov" ,python-pytest-cov) - ("python-pytest-xdist" ,python-pytest-xdist) - ("python-tox" ,python-tox))) + ("python-pytest-xdist" ,python-pytest-xdist))) (home-page "https://github.com/neithere/argh/") (synopsis "Argparse wrapper with natural syntax") (description @@ -22061,10 +23956,13 @@ and cuts down boilerplate code when testing libraries for asyncio.") (arguments '(#:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-paths + (add-after 'unpack 'apply-upstream-fixes (lambda* _ (substitute* "k5test/realm.py" - (("'kadmin_local'") "'kadmin.local'"))))))) + ;; Upstream commit f6b302d94dbdce37a1b81cc3faeeac4dc637b0e9. + (("'kadmin_local'") "'kadmin.local'") + ;; Upstream commit 3aef84515cf3d1a171c66856c898d0a5cbbd03ea. + (("\\.stop_daemon") "._stop_daemon"))))))) (home-page "https://github.com/pythongssapi/k5test") (synopsis "Library for setting up self-contained Kerberos 5 environments") (description @@ -22202,8 +24100,9 @@ but portable.") `(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ - (invoke "pytest" "-vv")))))) + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "pytest" "-vv"))))))) (native-inputs `(("python-coverage" ,python-coverage) ("python-docutils" ,python-docutils) @@ -23359,6 +25258,28 @@ For the most part it's transliterated from C, the major differences are: "Jinxed is an implementation of a subset of the Python curses library.") (license license:mpl2.0))) +(define-public python-svgutils + (package + (name "python-svgutils") + (version "0.3.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "svgutils" version)) + (sha256 + (base32 + "0lz0w2ajdvwd269a7ppnzawmx8px0116j0nx8xvhlihxrd28zx4y")))) + (build-system python-build-system) + (propagated-inputs + `(("python-lxml" ,python-lxml))) + (home-page "https://svgutils.readthedocs.io") + (synopsis "Python SVG editor") + (description "This is an utility package that helps with editing and +concatenating SVG files. It is especially directed at scientists preparing +final figures for submission to journals. So far it supports arbitrary +placement and scaling of SVG figures and adding markers, such as labels.") + (license license:expat))) + (define-public python-blessed (package (name "python-blessed") @@ -23765,7 +25686,7 @@ By default it uses the open Python vulnerability database Safety DB.") (propagated-inputs `(("wheel" ,python-wheel))) (native-inputs - `(("texlive" ,(texlive-union (list texlive-amsfonts + `(("texlive" ,(texlive-union (list texlive-amsfonts/patched texlive-fonts-ec texlive-latex-hyperref texlive-latex-oberdiek @@ -23955,6 +25876,41 @@ module patches @code{asyncio} to allow nested use of @code{asyncio.run} and @code{loop.run_until_complete}.") (license license:bsd-3))) +(define-public python-simpervisor + (package + (name "python-simpervisor") + (version "0.4") + (source + (origin + ;; Tests not included in release. + (method git-fetch) + (uri (git-reference + (url "https://github.com/yuvipanda/simpervisor") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1brsisx7saf4ic0dih1n5y7rbdbwn1ywv9pl32bch3061r46prvv")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; Test suite can't find aiohttp. + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "--maxfail" "3" "--verbose")) + #t))))) + (native-inputs + `(("python-aiohttp" ,python-aiohttp) + ("python-pytest" ,python-pytest) + ("python-pytest-asyncio" ,python-pytest-asyncio))) + (home-page "https://github.com/yuvipanda/simpervisor") + (synopsis "Simple async process supervisor") + (description + "This package provides a simple async process supervisor in Python.") + (license license:bsd-3))) + (define-public python-parallel (package (name "python-parallel") @@ -23988,13 +25944,13 @@ applications with variable CPU loads).") (define-public python-djvulibre (package (name "python-djvulibre") - (version "0.8.5") + (version "0.8.6") (source (origin (method url-fetch) (uri (pypi-uri "python-djvulibre" version)) (sha256 - (base32 "1c0lvpg7j2525cv52s3q5sg7hfnakkb8rmghg0jc02gshsxmrj4f")))) + (base32 "089smpq29ll0z37lnq26r2f72d31i33xm9fw9pc6hlcsm6nbjbiv")))) (build-system python-build-system) (native-inputs `(("ghostscript" ,ghostscript) @@ -24142,14 +26098,14 @@ disk files in asyncio applications.") (define-public python-dataclasses (package (name "python-dataclasses") - (version "0.7") + (version "0.8") (source (origin (method url-fetch) (uri (pypi-uri "dataclasses" version)) (sha256 (base32 - "1rh8111fbws2vxyf2qy2zw3x6p6cq1jfz8pf904gig5qwg56sjj9")))) + "15sc12nrc7gxwb30vfa6frzdnpmbap9ibi1fr1yrbkra6izhcyc4")))) (build-system python-build-system) (home-page "https://github.com/ericvsmith/dataclasses") @@ -24214,6 +26170,91 @@ query Watchman to discover file changes.") environment.") (license license:expat))) +(define-public python-logutils + (package + (name "python-logutils") + (version "0.3.5") + (source + (origin + (method url-fetch) + (uri (pypi-uri "logutils" version)) + (sha256 + (base32 + "10lsi5wv5ysnvf9ya4ncbix6mmipnv5067sf2cglc2f2sljql1dw")))) + (build-system python-build-system) + (home-page "https://bitbucket.org/vinay.sajip/logutils/") + (synopsis "Logging utilities") + (description "This package provides a set of handlers for the Python +standard library logging package. Some of these handlers are out-of-scope +for the standard library, and so they are packaged here. Others are updated +versions which have appeared in recent Python releases, but are usable with +older versions of Python and so are packaged here.") + (license license:bsd-3))) + +(define-public python-helper + (package + (name "python-helper") + (version "2.5.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "helper" version)) + (sha256 + (base32 + "1d2j64wgbggzv5rhvil10zndp2w78wa5np5w0psj122ws9qr9wsa")))) + (build-system python-build-system) + (native-inputs + `(("python-mock" ,python-mock))) + (propagated-inputs + `(("python-logutils" ,python-logutils) + ("python-pyyaml" ,python-pyyaml))) + (home-page "https://github.com/gmr/helper") + (synopsis "Library for writing configurable applications and daemons") + (description + "This package provides procedures for quickly writing configurable +applications and daemons.") + (license license:bsd-3))) + +(define-public python-qtsass + (package + (name "python-qtsass") + (version "0.3.0") + (source + (origin + ;; There are no tests in the PyPI tarball. + (method git-fetch) + (uri (git-reference + (url "https://github.com/spyder-ide/qtsass/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "09s04aa14d8jqbh71clrb5y7vcmkxlp94mwmvzrkxahry3bk03cb")))) + (build-system python-build-system) + (arguments + `(#:test-target "pytest" + #:phases + (modify-phases %standard-phases + ;; Tests need to read and write files. + (add-before 'check 'make-git-checkout-writable + (lambda _ + (for-each make-file-writable (find-files ".")) + #t))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner))) + (propagated-inputs + `(("python-libsass" ,python-libsass))) + (home-page "https://github.com/spyder-ide/qtsass") + (synopsis "Compile SCSS files to valid Qt stylesheets") + (description + "Besides being used in web development, CSS is also the way to stylize +Qt-based desktop applications. However, Qt's CSS has a few variations that +prevent the direct use of SASS compiler. + +The purpose of this tool is to fill the gap between SASS and Qt-CSS by +handling those variations.") + (license license:expat))) + (define-public python-qdarkstyle (package (name "python-qdarkstyle") @@ -24276,20 +26317,19 @@ Qt applications.") (define-public python-confuse (package (name "python-confuse") - (version "1.4.0") + (version "1.5.0") (source (origin (method url-fetch) (uri (pypi-uri "confuse" version)) (sha256 (base32 - "0r74djc8r6lfx6ldsqnhpvfsn256gsfzbl33qcm77hp2qr8h9z4j")))) + "0bh2kyj8wd7h9gg4nsvrbykl5ly0f70f0wi3fbm204b1f0fcmywj")))) (build-system python-build-system) (propagated-inputs - `(("python-pathlib" ,python-pathlib) - ("python-pyyaml" ,python-pyyaml))) + `(("python-pyyaml" ,python-pyyaml))) (home-page "https://github.com/beetbox/confuse") - (synopsis "Painless YAML configuration.") + (synopsis "Painless YAML configuration") (description "Confuse is a configuration library for Python that uses YAML. It takes care of defaults, overrides, type checking, command-line integration, human-readable errors, and standard OS-specific locations.") @@ -24352,7 +26392,7 @@ implementations.") ("swig" ,swig))) (inputs `(("python-wrapper" ,python-wrapper) - ("qtbase" ,qtbase) + ("qtbase" ,qtbase-5) ("libxi" ,libxi) ("libice" ,libice) ("soqt" ,soqt) @@ -24606,6 +26646,67 @@ typographically-improved HTML. While often used in conjunction with Jinja and Django template systems, the filters can be used in any environment.") (license license:bsd-3))) +(define-public python-ld + (package + (name "python-ld") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ld" version)) + (sha256 + (base32 + "1k4ydp5rgkv4985v459kcl06i1igjm1ywvh2vkbi9ck1zyyri1z5")))) + (build-system python-build-system) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://github.com/nir0s/ld") + (synopsis "OS platform information API") + (description + "The ld package provides information about the GNU/Linux distribution it +runs on, such as a reliable machine-readable ID, or version information.") + (license license:asl2.0))) + +(define-public python-quicktions + (package + (name "python-quicktions") + (version "1.11") + (source + (origin + (method url-fetch) + (uri (pypi-uri "quicktions" version)) + (sha256 + (base32 + "1px21a6x527i1bsr2p6bbf3jziqpvd1vjkvvzh13gsy4iip0yvzn")) + (modules '((guix build utils))) + (snippet + '(begin + ;; This file is generated by Cython. + (delete-file "src/quicktions.c") #t)))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'cythonize-sources + (lambda _ + (with-directory-excursion "src" + (invoke "cython" "quicktions.pyx")))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest")) + #t))))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest))) + (home-page "https://github.com/scoder/quicktions") + (synopsis "Fast fractions data type for rational numbers") + (description + "This package provides fast fractions data type for rational numbers. It +is the cythonized version of @code{fractions.Fraction}.") + (license license:psfl))) + (define-public python-pathvalidate (package (name "python-pathvalidate") @@ -24633,3 +26734,542 @@ Django template systems, the filters can be used in any environment.") "@code{pathvalidate} is a Python library to sanitize/validate strings representing paths or filenames.") (license license:expat))) + +(define-public python-escapism + (package + (name "python-escapism") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "escapism" version)) + (sha256 + (base32 + "1v74243wifcwhj5zkdiispxc9kb1xvnfzilg8bq308pjnkgnn9bk")))) + (build-system python-build-system) + (home-page "https://github.com/minrk/escapism") + (synopsis "Simple, generic library for escaping strings") + (description + "This Python library provides a programming interface to, given a set of +safe characters and an escape character, escape safe strings and unescape the +result.") + (license license:expat))) + +(define-public python-recommonmark + (package + (name "python-recommonmark") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "recommonmark" version)) + (sha256 + (base32 + "0rvdd2ikdr0yg6cx6594fdzn53cmdc0g0i6qsbcdq8i2kxjdpd5x")))) + (build-system python-build-system) + (propagated-inputs + `(("python-commonmark" ,python-commonmark) + ("python-docutils" ,python-docutils) + ("python-sphinx" ,python-sphinx))) + (arguments + '(#:phases (modify-phases %standard-phases + (add-after 'unpack 'delete-test-sphinx + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out"))) + (delete-file "tests/test_sphinx.py"))))))) + (home-page "https://github.com/readthedocs/recommonmark") + (synopsis "Docutils-compatibility bridge to CommonMark") + (description + "This packages provides a docutils-compatibility bridge to CommonMark, +enabling you to write CommonMark inside of Docutils & Sphinx projects.") + (license license:expat))) + +(define-public python-pyhull + (package + (name "python-pyhull") + (version "2015.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyhull" version)) + (sha256 + (base32 + "091sph52c4yk1jlm5w8xidxpzbia9r7s42bnb23q4m4b56ihmzyj")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (home-page "https://github.com/materialsvirtuallab/pyhull") + (synopsis "Python wrapper to Qhull") + (description + "This package provides a Python wrapper to @uref{http://www.qhull.org/, +Qhull} for the computation of the convex hull, Delaunay triangulation, and +Voronoi diagram.") + (license license:expat))) + +(define-public python-opcodes + ;; There are no tags in this repo, but 'opcodes/__init__.py' specifies a + ;; version number, which is what we use here. + (let ((commit "0f7c7d63f5e13ce5a89d9acc3934f1b6e247ec1f")) + (package + (name "python-opcodes") + (version "0.3.14") ;from 'opcodes/__init__.py' + (home-page "https://github.com/Maratyszcza/Opcodes") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fvxkr83gfl9f0ikd2wl2lzazzya2qz1hk4yn2a0pq742brbwpys")))) + (build-system python-build-system) + (synopsis "Database of processor instructions and opcodes") + (description + "This project documents instruction sets in a format convenient for +tools development. An instruction set is represented by three files: + +@itemize +@item an XML file that describes instructions; +@item an XSD file that describes the structure of the XML file; +@item a Python module that reads the XML file and represents it as a set of +Python objects; +@end itemize + +It currently provides descriptions for most user-mode x86, x86_64, and k1om +instructions up to AVX-512 and SHA (including 3dnow!+, XOP, FMA3, FMA4, TBM +and BMI2).") + (license license:bsd-2)))) + +(define-public python-peachpy + ;; There is no tag in this repo. + (let ((commit "906d578266dc7188bf61e4cdbc9f8ea7d69edec0") + (version "0.2.0") ;from 'peachpy/__init__.py' + (revision "1")) + (package + (name "python-peachpy") + (version (git-version version revision commit)) + (home-page "https://github.com/Maratyszcza/PeachPy") + (source (origin + (method git-fetch) + (uri (git-reference (url home-page) (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1yy62k3cjr6556nbp651w6v4hzl7kz4y75wy2dfqgndgbnixskx2")))) + (build-system python-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "setup.py" "nosetests"))))))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-rednose" ,python-rednose))) + (propagated-inputs + `(("python-six" ,python-six) + ("python-opcodes" ,python-opcodes))) + (synopsis "Efficient assembly code generation in Python") + (description + "PeachPy is a Python framework for writing high-performance assembly kernels. +PeachPy aims to simplify writing optimized assembly kernels while preserving +all optimization opportunities of traditional assembly. + +PeachPy can generate ELF, MS-COFF, Mach-O object files, and assembly listings +for the Go language tool chain; it adapts to different calling conventions and +application binary interfaces (ABIs); it takes care of register allocation; it +supports x86_64 instructions up to AVX-512 and SHA.") + (license license:bsd-2)))) + +(define-public python-pyan3 + (package + (name "python-pyan3") + (version "1.2.0") + (source + (origin + ;; Source tarball on PyPI lacks tests. + (method git-fetch) + (uri (git-reference + (url "https://github.com/Technologicat/pyan") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1367x25rcy2y8f0x9c2dbxl2qgdln3arr7ddyzybz2c28g6jrv5z")) + (patches (search-patches "python-pyan3-fix-positional-arguments.patch" + "python-pyan3-fix-absolute-path-bug.patch")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Extend PYTHONPATH so the built package will be found. + (setenv "PYTHONPATH" + (string-append (getcwd) ":" (getenv "PYTHONPATH"))) + (invoke "pytest"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-wheel" ,python-wheel))) + (propagated-inputs + `(("python-jinja2" ,python-jinja2))) + (home-page "https://github.com/Technologicat/pyan") + (synopsis "Offline call graph generator for Python 3") + (description "Pyan takes one or more Python source files, performs +a (rather superficial) static analysis, and constructs a directed graph of the +objects in the combined source, and how they define or use each other. The +graph can be output for rendering by GraphViz or yEd.") + (license license:gpl2))) + +(define-public date2name + (let ((commit "6c8f37277e8ec82aa50f90b8921422be30c4e798") + (revision "1")) + (package + (name "date2name") + (version (git-version "0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/novoid/date2name") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1vq96b7n16d932nyfhnzwdwxff0zrqanidmwr4cxj2p67ad9y3w7")))) + (build-system python-build-system) + (arguments + `(#:tests? #f ; no tests + #:phases + (modify-phases %standard-phases + (delete 'build) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((bindir (string-append (assoc-ref outputs "out") "/bin")) + (binary (string-append bindir "/date2name"))) + (mkdir-p bindir) + (copy-file "date2name/__init__.py" binary) + (chmod binary #o555))))))) + (synopsis "Handling time-stamps and date-stamps in file names") + (description "By default, date2name gets the modification time of matching +files and directories and adds a datestamp in standard ISO 8601+ format +YYYY-MM-DD at the beginning of the file or directory name.") + (home-page "https://github.com/novoid/date2name") + (license license:gpl3+)))) + +(define-public python-braintree + (package + (name "python-braintree") + (version "4.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "braintree" version)) + (sha256 + (base32 "19kli85q18p80nsn8fm4ql6axpr7bllfqg5chv2ywhr8zr8bssll")))) + (build-system python-build-system) + (propagated-inputs + `(("python-requests" ,python-requests))) + (home-page + "https://developers.braintreepayments.com/python/sdk/server/overview") + (synopsis "Braintree Python Library") + (description "The Braintree Python SDK provides integration access to the +Braintree Gateway. Braintree is a US-based payments service provider.") + (license license:expat))) + +(define-public python-markuppy + (package + (name "python-markuppy") + (version "1.14") + (source + (origin + (method url-fetch) + (uri (pypi-uri "MarkupPy" version)) + (sha256 + (base32 "0pqdmpxbr8iq22b4css2gz5z6s01ddpzyj25x27kgbs2lp0f5phs")))) + (build-system python-build-system) + (home-page "https://github.com/tylerbakke/MarkupPy") + (synopsis "A pythonic HTML/XML generator") + (description "This Python module attempts to make it easier to generate +HTML/XML from a Python program in an intuitive, lightweight, customizable and +pythonic way.") + (license license:expat))) + +(define-public python-tablib + (package + (name "python-tablib") + (version "3.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "tablib" version)) + (sha256 + (base32 "03f1z6jq6rf67gwhbm9ma4rydm8h447a5nh5lcs5l8jg8l4aqg7q")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "PYTHONPATH" + (string-append (getcwd) "/build/lib:" + (getenv "PYTHONPATH"))) + (invoke "pytest"))))))) + (native-inputs + `(("python-pandas" ,python-pandas) ;; required for test-suite + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-markuppy" ,python-markuppy) + ("python-odfpy" ,python-odfpy) + ("python-openpyxl" ,python-openpyxl) + ("python-pyyaml" ,python-pyyaml) + ("python-tabulate" ,python-tabulate) + ("python-xlrd" ,python-xlrd) + ("python-xlwt" ,python-xlwt))) + (home-page "https://tablib.readthedocs.io") + (synopsis "Format agnostic tabular data library") + (description "@code{tablib} is a format-agnostic tabular dataset library, +written in Python. Supported output formats are Excel (Sets + Books), +JSON (Sets + Books), YAML (Sets + Books), HTML (Sets), Jira (Sets), +TSV (Sets), ODS (Sets), CSV (Sets), and DBF (Sets). + +@code{tablib} also supports Pandas DataFrames (Sets). Anyhow, since pandas is +quite huge, this Guix package doesn't depend on pandas. In case, just also +install @code{python-pandas}.") + (license license:expat))) + +(define-public python-csb43 + (package + (name "python-csb43") + (version "0.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "csb43" version)) + (sha256 + (base32 "0r0csl9npncnkfafg3rg6xr38d1qr0sxvq7wn7mg9bq41hvvh1si")))) + (build-system python-build-system) + (native-inputs + `(("python-lxml" ,python-lxml))) + (propagated-inputs + `(("python-pycountry" ,python-pycountry) + ("python-pyyaml" ,python-pyyaml) + ("python-tablib" ,python-tablib))) + (home-page "https://bitbucket.org/wmj/csb43") + (synopsis "Tools for converting from the Spanish banks' format CSB norm +43 (CSB43)") + (description "This package provides tools to convert files in the format +used by multiple Spanish banks (standard 43 of the Spanish Banking Council +[CSB43] / Spanish Banking Association [AEB43]) to other formats. + +Supported output formats are: OFX, HomeBank CSV, HTML, JSON, ODS (OpenDocument +spreadsheet), CSV, TSV, XLS, XLSX (Microsoft Excel spreadsheet), and YAML.") + (license license:lgpl3))) + +(define-public python-febelfin-coda + (package + (name "python-febelfin-coda") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "febelfin-coda" version)) + (sha256 + (base32 "10nf4hdwldqgdmh4g613vx55sbsw1x1yzpvs3crwlggbp75fjjfi")))) + (build-system python-build-system) + (home-page "https://coda.b2ck.com/") + (synopsis "A module to parse Belgian CODA files") + (description "This package provides a module to parse Coded statement of +account (CODA) files as defined be the Belgian Febelfin bank standard.") + (license license:bsd-3))) + +(define-public python-ofxparse + (package + (name "python-ofxparse") + (version "0.21") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ofxparse" version)) + (sha256 + (base32 "19y4sp5l9jqiqzzlbqdfiab42qx7d84n4xm4s7jfq397666vcyh5")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "nosetests" "-v"))))))) + (native-inputs + `(("python-nose" ,python-nose))) + (propagated-inputs + `(("python-beautifulsoup4" ,python-beautifulsoup4) + ("python-lxml" ,python-lxml) + ("python-six" ,python-six))) + (home-page "http://sites.google.com/site/ofxparse") + (synopsis "Tools for working with the OFX (Open Financial Exchange) file +format") + (description "@code{ofxparse} is a parser for Open Financial +Exchange (.ofx) format files. OFX files are available from almost any online +banking site, so they work well if you want to pull together your finances +from multiple sources. Online trading accounts also often provide account +statements in OFX files.") + (license license:expat))) + +(define-public python-stripe + (package + (name "python-stripe") + (version "2.60.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "stripe" version)) + (sha256 + (base32 "0258lzh4qikhinfggnlfh5aklcvg7lrvl8giqrh0yf0l61wvfrl9")))) + (build-system python-build-system) + (arguments + '(#:tests? #f)) ;; tests require network + (propagated-inputs + `(("python-requests" ,python-requests))) + (home-page "https://github.com/stripe/stripe-python") + (synopsis "Python bindings for the Stripe financial services' API") + (description "This package provides access to the Stripe financial +services' API. It includes a pre-defined set of classes for API resources +that initialize themselves dynamically from API responses which makes it +compatible with a wide range of versions of the Stripe API.") + (license license:expat))) + +(define-public python-platformdirs + (package + (name "python-platformdirs") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "platformdirs" version)) + (sha256 + (base32 "07hq5qrp7pqj63iczg01wbf5ii6f0ncd0dq5mzkdhsslmg9slbb3")))) + (build-system python-build-system) + (native-inputs + `(("python-appdirs" ,python-appdirs) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-mock" ,python-pytest-mock))) + (home-page "https://github.com/platformdirs/platformdirs") + (synopsis "Determine the appropriate platform-specific directories") + (description "When writing applications, finding the right location to +store user data and configuration varies per platform. Even for +single-platform apps, there may by plenty of nuances in figuring out the right +location. This small Python module determines the appropriate +platform-specific directories, e.g. the ``user data dir''.") + (license license:expat))) + +(define-public python-face + (package + (name "python-face") + (version "20.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "face" version)) + (sha256 + (base32 "0gpd9f0rmbv3rd2szi2na37l29fabkwazikjrxc6wca1lddwlnbx")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + ;; Make installed package available for running the tests. + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-v"))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (propagated-inputs + `(("python-boltons" ,python-boltons))) + (home-page "https://github.com/mahmoud/face") + (synopsis "CLI parsing and dispatching microframework") + (description "@code{python-face} is a Pythonic microframework for building +command-line applications. + +@itemize +@item First-class subcommand support +@item Powerful middleware architecture +@item Separate parser layer +@item Built-in flagfile support +@item Handy testing utilities +@item Themeable help display +@end itemize") + (license license:bsd-3))) + +(define-public python-glom + (package + (name "python-glom") + (version "20.11.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "glom" version)) + (sha256 + (base32 "04pba09vdr3qjvqvy14g60fscdsi35chbbyqpczdp76cpir101al")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + ;; Make installed executable available for running the tests. + (setenv "PATH" + (string-append (assoc-ref outputs "out") "/bin" + ":" (getenv "PATH"))) + (invoke "pytest" "-v"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pyyaml" ,python-pyyaml))) + (propagated-inputs + `(("python-attrs" ,python-attrs) + ("python-boltons" ,python-boltons) + ("python-face" ,python-face))) + (home-page "https://github.com/mahmoud/glom") + (synopsis "Declaratively restructure data") + (description "Real applications have real data, and real data +nests---objects inside of objects inside of lists of objects. glom is a new +and powerful way to handle real-world data, featuring: + +@itemize +@item Path-based access to nested data structures +@item Readable, meaningful error messages +@item Declarative data transformation, using lightweight, Pythonic specifications +@item Built-in data exploration and debugging features +@end itemize") + (license license:bsd-3))) + +(define-public python-box + (package + (name "python-box") + (version "5.3.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-box" version)) + (sha256 + (base32 + "0jhrdif57khx2hsw1q6a9x42knwcvq8ijgqyq1jmll6y6ifyzm2f")))) + (build-system python-build-system) + (propagated-inputs + `(("python-msgpack" ,python-msgpack) + ("python-ruamel.yaml" ,python-ruamel.yaml) + ("python-toml" ,python-toml))) + (home-page "https://github.com/cdgriffith/Box") + (synopsis "Advanced Python dictionaries with dot notation access") + (description + "This package provides the @code{python-box} Python module. +It implements advanced Python dictionaries with dot notation access.") + (license license:expat))) |