diff options
Diffstat (limited to 'gnu/packages')
121 files changed, 5092 insertions, 1663 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 40cd0fd91d..cabea29c17 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -321,9 +321,6 @@ interface and is based on GNU Guile.") `(("guile" ,guile-2.2) ("guile2.2-readline" ,guile2.2-readline))))) -(define-public guile3.0-shepherd - (deprecated-package "guile3.0-shepherd" shepherd)) - (define-public guile2.0-shepherd (package (inherit shepherd) @@ -3224,13 +3221,13 @@ a new command using the matched rule, and runs it.") (define-public di (package (name "di") - (version "4.50") + (version "4.51") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/diskinfo-di/di-" version ".tar.gz")) (sha256 - (base32 "0aj9ldkvmj8fmrk685vd2gagz0q8lwsn2nfbx6r6mza94mn8pw42")))) + (base32 "1fv12j9b9sw6p38lcbzcw87zl5qp1aa7a4a4jn3449zz9af15ckr")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; obscure test failures @@ -3240,8 +3237,7 @@ a new command using the matched rule, and runs it.") (add-before 'build 'setup-environment (lambda* (#:key outputs #:allow-other-keys) (setenv "CC" ,(cc-for-target)) - (setenv "prefix" (assoc-ref outputs "out")) - #t))) + (setenv "prefix" (assoc-ref outputs "out"))))) #:make-flags (list "--environment-overrides"))) (home-page "https://gentoo.com/di/") (synopsis "Advanced df like disk information utility") diff --git a/gnu/packages/adns.scm b/gnu/packages/adns.scm index a5de4a116b..ef3bf68e71 100644 --- a/gnu/packages/adns.scm +++ b/gnu/packages/adns.scm @@ -109,3 +109,25 @@ multiple clients and programs with graphical user interfaces.") (arguments `(;; XXX: Tests require name resolution (the normal variant runs no tests). #:tests? #f))))) + +(define-public c-ares-for-node + (hidden-package + (package + (inherit c-ares) + (name "c-ares") + (version "1.18.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://c-ares.haxx.se/download/" name "-" version + ".tar.gz")) + (sha256 + (base32 + "1kxviskwsaa7dcgscvssxa8ps88pdq7kq4z93gxvz7sam2l54z8s")))) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-before 'check 'filter-live-tests + (lambda _ + ;; Filter tests that require internet access. + (setenv "GTEST_FILTER" "-*.Live*:*.FamilyV4*"))))))))) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 49ed12f3d3..1fb755d271 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -6,6 +6,8 @@ ;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in> ;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> +;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -56,6 +58,7 @@ #:use-module (gnu packages version-control) #:use-module (gnu packages video) #:use-module (gnu packages xiph) + #:use-module (gnu packages xml) #:use-module (gnu packages xorg) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) @@ -580,7 +583,7 @@ any arbitrary astrometric projection defined in the WCS standard.") ;; maybe required? ("mesa" ,mesa) ;; optional: fmtlib, Eigen3; - ("fmt" ,fmt) + ("fmt" ,fmt-7) ("eigen" ,eigen) ;; glut: for glut interface ("freeglut" ,freeglut))) @@ -612,6 +615,100 @@ accurately in real time at any rate desired.") `(#:configure-flags '("-DENABLE_GTK=ON" "-DENABLE_QT=OFF") #:tests? #f)))) +(define-public python-astropy + (package + (name "python-astropy") + (version "4.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astropy" version)) + (sha256 + (base32 "0lfd6n7v7kas4wvacddnwgccax3ks908735dzilg7dsf7ci52f9d")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Remove Python bundles. + (with-directory-excursion "astropy/extern" + (for-each delete-file-recursively '("ply" "configobj"))) + ;; Remove cextern bundles and leave the wcslib bundle. Astropy + ;; upgrades to different versions of wcslib every few releases + ;; and tests break every upgrade. + ;; TODO: unbundle wcslib. + (with-directory-excursion "cextern" + (for-each delete-file-recursively '("cfitsio" "expat"))) + #t)))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'preparations + (lambda _ + ;; Use our own libraries in place of bundles, with the + ;; exception of wcslib. + (setenv "ASTROPY_USE_SYSTEM_CFITSIO" "1") + (setenv "ASTROPY_USE_SYSTEM_EXPAT" "1") + ;; Some tests require a writable home. + (setenv "HOME" "/tmp") + ;; Relax xfail tests. + (substitute* "setup.cfg" + (("xfail_strict = true") "xfail_strict = false")) + ;; Replace all references to external ply. + (let ((ply-files '("coordinates/angle_formats.py" + "utils/parsing.py"))) + (with-directory-excursion "astropy" + (map (lambda (file) + (substitute* file (("astropy.extern.ply") + "ply"))) + ply-files))) + ;; Replace reference to external configobj. + (with-directory-excursion "astropy/config" + (substitute* "configuration.py" + (("from astropy.extern.configobj ") ""))))) + ;; This file is opened in both install and check phases. + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "astropy/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "astropy/_compiler.c"))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; Extensions have to be rebuilt before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace") + (invoke "python" "-m" "pytest" "--pyargs" "astropy" + ;; Skip tests that need remote data. + "-m" "not remote_data"))))))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("python-coverage" ,python-coverage) + ("python-cython" ,python-cython) + ("python-extension-helpers" ,python-extension-helpers) + ("python-ipython" ,python-ipython) + ("python-jplephem" ,python-jplephem) + ("python-objgraph" ,python-objgraph) + ("python-pytest" ,python-pytest) + ("python-pytest-astropy" ,python-pytest-astropy) + ("python-pytest-xdist" ,python-pytest-xdist) + ("python-setuptools-scm" ,python-setuptools-scm) + ("python-sgp4" ,python-sgp4) + ("python-skyfield" ,python-skyfield))) + (inputs + `(("cfitsio" ,cfitsio) + ("expat" ,expat))) + (propagated-inputs + `(("python-configobj" ,python-configobj) + ("python-numpy" ,python-numpy) + ("python-ply" ,python-ply) + ("python-pyerfa" ,python-pyerfa))) + (home-page "https://www.astropy.org/") + (synopsis "Core package for Astronomy in Python") + (description + "Astropy is a single core package for Astronomy in Python. It contains +much of the core functionality and some common tools needed for performing +astronomy and astrophysics.") + (license license:bsd-3))) + (define-public libnova (package (name "libnova") @@ -952,13 +1049,13 @@ more.") (define-public python-jplephem (package (name "python-jplephem") - (version "2.15") + (version "2.16") (source (origin (method url-fetch) (uri (pypi-uri "jplephem" version)) (sha256 - (base32 "1ca3dswsslij79qg6dcijjz4l0fj6nzmxld8z93v45ahlkhps0g0")))) + (base32 "1xvivnsywjaf5lxn3kyg2jhhq393gcwkjrl634m8dn52ypidrcdb")))) (build-system python-build-system) (arguments `(#:phases @@ -1006,12 +1103,13 @@ JPL ephemerides use to predict raw (x,y,z) planetary positions.") (setenv "PYERFA_USE_SYSTEM_LIBERFA" "1") #t))))) (native-inputs - `(("pytest" ,python-pytest) - ("setuptools-scm" ,python-setuptools-scm) - ("pytest-doctestplus" ,python-pytest-doctestplus))) + `(("pytest-doctestplus" ,python-pytest-doctestplus) + ("python-pytest" ,python-pytest) + ("python-setuptools-scm" ,python-setuptools-scm))) (inputs - `(("liberfa" ,erfa) - ("numpy" ,python-numpy))) + `(("liberfa" ,erfa))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) (home-page "https://github.com/liberfa/pyerfa") (synopsis "Python bindings for ERFA") (description diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index f4cfe18a87..a6238835bc 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -2840,7 +2840,7 @@ buffers, and audio capture.") (define-public patchage (package (name "patchage") - (version "1.0.2") + (version "1.0.4") (source (origin (method url-fetch) (uri (string-append "https://download.drobilla.net/patchage-" @@ -2848,11 +2848,10 @@ buffers, and audio capture.") ".tar.bz2")) (sha256 (base32 - "0dk3fiac10m83mwss3026yz7ygc47c2iw924cwwnh2fyydc9bsy6")))) + "0gbakiw3mikgbvy3pssrmqmn7z5c7kp4vyaxj5rs4jnkscxgw9vw")))) (build-system waf-build-system) (arguments - `(#:tests? #f ; no check target - #:python ,python-2)) + `(#:tests? #f)) ; no check target (inputs `(("alsa-lib" ,alsa-lib) ("boost" ,boost) @@ -2863,7 +2862,7 @@ buffers, and audio capture.") ("dbus-glib" ,dbus-glib))) (native-inputs `(("pkg-config" ,pkg-config))) - (home-page "https://drobilla.net/software/patchage/") + (home-page "https://drobilla.net/software/patchage.html") (synopsis "Modular patch bay for audio and MIDI systems") (description "Patchage is a modular patch bay for audio and MIDI systems based on JACK @@ -2906,14 +2905,14 @@ different audio devices such as ALSA or PulseAudio.") (define-public qjackctl (package (name "qjackctl") - (version "0.9.4") + (version "0.9.5") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/qjackctl/qjackctl/" version "/qjackctl-" version ".tar.gz")) (sha256 (base32 - "186rg3j67rac9ds1r7gnrib2d0smgv15cmr5gwb7v83mywcp1gzy")))) + "1g61xwsxsndwlnh4547vl7jfcf4kqlbb4394jq2m8qbbzk51b6rv")))) (build-system cmake-build-system) (arguments '(#:tests? #f)) ; no check target diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm index a2dcffaab6..882042d81f 100644 --- a/gnu/packages/backup.scm +++ b/gnu/packages/backup.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2015, 2016, 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> -;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2017, 2021 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2017 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2017, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Christine Lemmer-Webber <cwebber@dustycloud.org> @@ -80,6 +80,7 @@ #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages rsync) + #:use-module (gnu packages serialization) #:use-module (gnu packages ssh) #:use-module (gnu packages tls) #:use-module (gnu packages valgrind) @@ -88,7 +89,7 @@ (define-public duplicity (package (name "duplicity") - (version "0.8.20") + (version "0.8.21") (source (origin (method url-fetch) @@ -97,7 +98,7 @@ "-series/" version "/+download/duplicity-" version ".tar.gz")) (sha256 - (base32 "0d125mxknpn44xwgqzzak9y5ydigscrpjv9d63126mfc6yfngr5v")))) + (base32 "0ld4bhsi6iv4bvy99pblbr7vlwy9jbgfd6flyvb8qwbl8rvadzjp")))) (build-system python-build-system) (native-inputs `(("gettext" ,gettext-minimal) ; for msgfmt @@ -138,8 +139,7 @@ "/bin/dbus-launch']"))) (substitute* '("testing/functional/__init__.py" "testing/overrides/bin/lftp") - (("/bin/sh") (which "sh"))) - #t)) + (("/bin/sh") (which "sh"))))) (add-before 'check 'set-up-tests (lambda* (#:key inputs #:allow-other-keys) (setenv "HOME" (getcwd)) ; gpg needs to write to $HOME @@ -147,8 +147,7 @@ (search-input-directory inputs "share/zoneinfo")) ;; Some things respect TMPDIR, others hard-code /tmp, and the ;; defaults don't match up, breaking test_restart. Fix it. - (setenv "TMPDIR" "/tmp") - #t))))) + (setenv "TMPDIR" "/tmp")))))) (home-page "https://duplicity.gitlab.io/duplicity-web/") (synopsis "Encrypted backup using rsync algorithm") (description @@ -1170,3 +1169,51 @@ original files. For example, a software archive made using tar and Gzip will need to describe the order of files in the tarball and the compression parameters used by Gzip.") (license license:gpl3+))) + +(define-public borgmatic + (package + (name "borgmatic") + (version "1.5.20") + (source + (origin + (method url-fetch) + (uri (pypi-uri "borgmatic" version)) + (sha256 + (base32 "1rdpj1mii4fbyprg56krf5k0xsd97ghybaabr7zdhsrcsxf719ha")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'configure + (lambda* (#:key inputs #:allow-other-keys) + ;; Set absolute store path to borg. + (substitute* "borgmatic/commands/borgmatic.py" + (("location\\.get\\('local_path', 'borg'\\)") + (string-append "location.get('local_path', '" + (assoc-ref inputs "borg") "/bin/borg" + "')"))))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + ;; Tests require the installed executable. + (setenv "PATH" (string-append (assoc-ref outputs "out") "/bin" + ":" (getenv "PATH"))) + (invoke "pytest"))))))) + (inputs + `(("borg" ,borg) + ("python-colorama" ,python-colorama) + ("python-jsonschema" ,python-jsonschema) + ("python-requests" ,python-requests) + ("python-ruamel.yaml" ,python-ruamel.yaml))) + (native-inputs + `(("python-flexmock" ,python-flexmock) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov))) + (home-page "https://torsion.org/borgmatic/") + (synopsis "Simple, configuration-driven backup software") + (description + "borgmatic is simple, configuration-driven backup software for servers +and workstations. Protect your files with client-side encryption. Backup +your databases too. Monitor it all with integrated third-party services. +borgmatic is powered by borg.") + (license license:gpl3+))) diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm index 9741814c82..fdb00ca538 100644 --- a/gnu/packages/benchmark.scm +++ b/gnu/packages/benchmark.scm @@ -172,9 +172,6 @@ Efficiency of the MPI implementation. @end itemize") (license license:cpl1.0))) -(define-public imb-openmpi - (deprecated-package "imb-openmpi" intel-mpi-benchmarks/openmpi)) - (define-public multitime (package (name "multitime") diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 47bfa11e68..d36d070a56 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13123,7 +13123,7 @@ within the R for Mass Spectrometry packages.") "The MsFeature package defines functionality for Mass Spectrometry features. This includes functions to group (LC-MS) features based on some of their properties, such as retention time (coeluting features), or correlation -of signals across samples. This packge hence allows to group features, and +of signals across samples. This package hence allows to group features, and its results can be used as an input for the @code{QFeatures} package which allows to aggregate abundance levels of features within each group. This package defines concepts and functions for base and common data types, diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 12533c9efa..f2d53360a4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -48,6 +48,7 @@ #:use-module (guix hg-download) #:use-module (guix build-system ant) #:use-module (guix build-system gnu) + #:use-module (guix build-system cargo) #:use-module (guix build-system cmake) #:use-module (guix build-system go) #:use-module (guix build-system haskell) @@ -77,6 +78,7 @@ #:use-module (gnu packages compression) #:use-module (gnu packages cpio) #:use-module (gnu packages cran) + #:use-module (gnu packages crates-io) #:use-module (gnu packages curl) #:use-module (gnu packages documentation) #:use-module (gnu packages databases) @@ -141,6 +143,7 @@ #:use-module (gnu packages serialization) #:use-module (gnu packages shells) #:use-module (gnu packages sphinx) + #:use-module (gnu packages sqlite) #:use-module (gnu packages statistics) #:use-module (gnu packages swig) #:use-module (gnu packages tbb) @@ -1295,6 +1298,128 @@ relying on a complex dependency tree.") (define-public python2-fastalite (package-with-python2 python-fastalite)) +(define-public biosoup + (package + (name "biosoup") + (version "0.10.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rvaser/biosoup") + ;; Corresponds to version 0.10.0 + (commit "38181f09854ff42cbd9632200a2ec9fb37a4b7b6"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02hvyka703zagx0nvv2yx3dkc748zc8g6qbrpya7r8kfkcl7y8hw")))) + (build-system cmake-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "./bin/biosoup_test"))))))) + (native-inputs + `(("googletest" ,googletest))) + (home-page "https://github.com/rvaser/biosoup") + (synopsis "C++ support library for bioinformatics tools") + (description "Biosoup is a C++ collection of header-only data structures +used for storage and logging in bioinformatics tools.") + (license license:expat))) + +(define-public bioparser + (package + (name "bioparser") + (version "3.0.13") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rvaser/bioparser") + ;; Corresponds to tag 3.0.13 + (commit "13341e6e0855c6b358ffcea6dad216e1009e1287"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0c5p2dl8jb12ci9f427jzrmmm9cgvc1k4fxsn2ggkfsin6r1r82i")))) + (build-system cmake-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "./bin/bioparser_test"))))))) + (inputs + `(("biosoup" ,biosoup))) + (propagated-inputs + `(("zlib" ,zlib))) + (native-inputs + `(("googletest" ,googletest))) + (home-page "https://github.com/rvaser/bioparser") + (synopsis "C++ library for parsing several formats in bioinformatics") + (description "Bioparser is a C++ header only parsing library for several +bioinformatics formats (FASTA/Q, MHAP/PAF/SAM), with support for zlib +compressed files.") + (license license:expat))) + +(define-public circtools + (package + (name "circtools") + (version "1.0.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Kevinzjy/circtools") + ;; Corresponds to tag v1.0.0 + (commit "79380de59013601021ca3b1352d6f64d2fb89646") + (recursive? #t))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0wg1s927g32k25j967kfr8l30nmr4c0p4zvy5igvy7cs6chd60lh")))) + (build-system cargo-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'make-writable + (lambda _ + (for-each make-file-writable (find-files ".")))) + (add-after 'unpack 'prepare-spoa-dependencies + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "vendor/spoa/CMakeLists.txt" + (("find_package\\(bioparser 3.0.13 QUIET\\)") + "find_package(bioparser 3.0.13 CONFIG)") + (("find_package\\(biosoup 0.10.0 QUIET\\)") + "find_package(biosoup 0.10.0 CONFIG)") + (("GTest_FOUND") "TRUE"))))) + #:cargo-inputs + (("rust-anyhow" ,rust-anyhow-1) + ("rust-bio" ,rust-bio-0.33) + ("rust-chrono" ,rust-chrono-0.4) + ("rust-docopt" ,rust-docopt-1) + ("rust-flate2" ,rust-flate2-1) + ("rust-indicatif" ,rust-indicatif-0.15) + ("rust-libc" ,rust-libc-0.2) + ("rust-serde" ,rust-serde-1) + ("rust-seq-io" ,rust-seq-io-0.3)))) + (inputs + `(("bioparser" ,bioparser) + ("biosoup" ,biosoup))) + (native-inputs + `(("cmake" ,cmake) + ("pkg-config" ,pkg-config) + ("googletest" ,googletest))) + (home-page "https://github.com/Kevinzjy/circtools") + (synopsis "Accelerating functions in CIRI toolkit") + (description "This package provides accelerated functions for the CIRI +toolkit. It also provides the @code{ccs} executable to scan for circular +consensus sequences.") + (license license:expat))) + (define-public ciri-long (package (name "ciri-long") @@ -1323,11 +1448,21 @@ relying on a complex dependency tree.") (add-before 'build 'build-libssw (lambda _ (with-directory-excursion "libs/striped_smith_waterman" - (invoke "make" "libssw.so"))))))) - (inputs - `(("python-biopython" ,python-biopython) + (invoke "make" "libssw.so")))) + (add-before 'build 'fix-reference-to-ccs + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "CIRI_long/pipeline.py" + (("'ccs -i") + (string-append "'" + (assoc-ref inputs "circtools") "/bin/ccs" + " -i"))) + ;; yuck! + (substitute* "CIRI_long/main.py" + (("os.chmod\\(lib_path.*") ""))))))) + (inputs + `(("circtools" ,circtools) + ("python-biopython" ,python-biopython) ("python-bwapy" ,python-bwapy) - ("python-cython" ,python-cython) ("python-levenshtein" ,python-levenshtein) ("python-mappy" ,python-mappy) ("python-numpy" ,python-numpy) @@ -1337,7 +1472,8 @@ relying on a complex dependency tree.") ("python-scikit-learn" ,python-scikit-learn) ("python-scipy" ,python-scipy))) (native-inputs - `(("python-nose" ,python-nose) + `(("python-cython" ,python-cython) + ("python-nose" ,python-nose) ("python-setuptools" ,python-setuptools))) (home-page "https://ciri-cookbook.readthedocs.io/") (synopsis "Circular RNA identification for Nanopore sequencing") @@ -11794,47 +11930,48 @@ implementation differs in these ways: wheel (string-append "--prefix=" out))) (find-files "dist" "\\.whl$"))))) (replace 'check - (lambda* (#:key inputs #:allow-other-keys) - ;; These tests require Internet access. - (delete-file-recursively "scanpy/tests/notebooks") - (delete-file "scanpy/tests/test_clustering.py") - (delete-file "scanpy/tests/test_datasets.py") - (delete-file "scanpy/tests/test_score_genes.py") - (delete-file "scanpy/tests/test_highly_variable_genes.py") - - ;; TODO: I can't get the plotting tests to work, even with Xvfb. - (delete-file "scanpy/tests/test_embedding_plots.py") - (delete-file "scanpy/tests/test_preprocessing.py") - (delete-file "scanpy/tests/test_read_10x.py") - - ;; TODO: these fail with TypingError and "Use of unsupported - ;; NumPy function 'numpy.split'". - (delete-file "scanpy/tests/test_metrics.py") - - ;; The following tests requires 'scanorama', which isn't - ;; packaged yet. - (delete-file "scanpy/tests/external/test_scanorama_integrate.py") - - (setenv "PYTHONPATH" - (string-append (getcwd) ":" - (assoc-ref inputs "python-anndata:source") ":" - (getenv "PYTHONPATH"))) - (invoke "pytest" "-vv" - "-k" - ;; Plot tests that fail. - (string-append "not test_dotplot_matrixplot_stacked_violin" - " and not test_violin_without_raw" - " and not test_correlation" - " and not test_scatterplots" - " and not test_scatter_embedding_add_outline_vmin_vmax_norm" - " and not test_paga" - " and not test_paga_compare" - - ;; These try to connect to the network - " and not test_plot_rank_genes_groups_gene_symbols" - " and not test_pca_chunked" - " and not test_pca_sparse" - " and not test_pca_reproducible"))))))) + (lambda* (#:key tests? inputs #:allow-other-keys) + (when tests? + ;; These tests require Internet access. + (delete-file-recursively "scanpy/tests/notebooks") + (delete-file "scanpy/tests/test_clustering.py") + (delete-file "scanpy/tests/test_datasets.py") + (delete-file "scanpy/tests/test_score_genes.py") + (delete-file "scanpy/tests/test_highly_variable_genes.py") + + ;; TODO: I can't get the plotting tests to work, even with Xvfb. + (delete-file "scanpy/tests/test_embedding_plots.py") + (delete-file "scanpy/tests/test_preprocessing.py") + (delete-file "scanpy/tests/test_read_10x.py") + + ;; TODO: these fail with TypingError and "Use of unsupported + ;; NumPy function 'numpy.split'". + (delete-file "scanpy/tests/test_metrics.py") + + ;; The following tests requires 'scanorama', which isn't + ;; packaged yet. + (delete-file "scanpy/tests/external/test_scanorama_integrate.py") + + (setenv "PYTHONPATH" + (string-append (getcwd) ":" + (assoc-ref inputs "python-anndata:source") ":" + (getenv "PYTHONPATH"))) + (invoke "pytest" "-vv" + "-k" + ;; Plot tests that fail. + (string-append "not test_dotplot_matrixplot_stacked_violin" + " and not test_violin_without_raw" + " and not test_correlation" + " and not test_scatterplots" + " and not test_scatter_embedding_add_outline_vmin_vmax_norm" + " and not test_paga" + " and not test_paga_compare" + + ;; These try to connect to the network + " and not test_plot_rank_genes_groups_gene_symbols" + " and not test_pca_chunked" + " and not test_pca_sparse" + " and not test_pca_reproducible")))))))) (propagated-inputs `(("python-anndata" ,python-anndata) ("python-h5py" ,python-h5py) @@ -13470,7 +13607,8 @@ let before_space s = ("ocaml-sqlite3" ,(package-with-ocaml4.07 ocaml-sqlite3)) ("ocaml-xmlm" ,(package-with-ocaml4.07 ocaml-xmlm)) ("ocaml-mcl" ,(package-with-ocaml4.07 ocaml-mcl)) - ("ocaml-gsl" ,ocaml4.07-gsl-1))) + ("ocaml-gsl" ,ocaml4.07-gsl-1) + ("sqlite:static" ,sqlite "static"))) (native-inputs `(("cddlib-src" ,(package-source cddlib)) ("ocamlbuild" ,(package-with-ocaml4.07 ocamlbuild)) diff --git a/gnu/packages/boost.scm b/gnu/packages/boost.scm index a6149721f8..440728caea 100644 --- a/gnu/packages/boost.scm +++ b/gnu/packages/boost.scm @@ -280,6 +280,13 @@ across a broad spectrum of applications.") (define-public boost-with-python3 (deprecated-package "boost-with-python3" boost)) +(define-public boost-with-python2 + (package/inherit boost + (name "boost-python2") + (native-inputs + `(("python" ,python-2) + ,@(alist-delete "python" (package-native-inputs boost)))))) + (define-public boost-static (package (inherit boost) diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index bb668681eb..6d1fec3fcb 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -540,7 +540,7 @@ tree binary files. These are board description files used by Linux and BSD.") (build-system gnu-build-system) (home-page "https://www.denx.de/wiki/U-Boot/") (synopsis "ARM bootloader") - (description "U-Boot is a bootloader used mostly for ARM boards. It + (description "U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).") (license license:gpl2+))) @@ -739,7 +739,7 @@ board-independent tools."))) (package (inherit base) (name "u-boot-am335x-boneblack") - (description "U-Boot is a bootloader used mostly for ARM boards. It + (description "U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc). This U-Boot is built for the BeagleBone Black, which was removed upstream, @@ -859,7 +859,7 @@ device while it's being turned on (and a while longer).") (let ((base (make-u-boot-package "novena" "arm-linux-gnueabihf"))) (package (inherit base) - (description "U-Boot is a bootloader used mostly for ARM boards. It + (description "U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc). This U-Boot is built for Novena. Be advised that this version, contrary diff --git a/gnu/packages/build-tools.scm b/gnu/packages/build-tools.scm index cd8a84872a..849101c2a4 100644 --- a/gnu/packages/build-tools.scm +++ b/gnu/packages/build-tools.scm @@ -103,7 +103,7 @@ makes a few sacrifices to acquire fast full and incremental build times.") (define-public bear (package (name "bear") - (version "3.0.4") + (version "3.0.16") (source (origin (method git-fetch) (uri (git-reference @@ -114,7 +114,7 @@ makes a few sacrifices to acquire fast full and incremental build times.") "bear-disable-preinstall-tests.patch")) (sha256 (base32 - "15r22sbk5bibrhf54lf0shiqw1gnsik24fr5as96w3hnj6iahgwn")))) + "01giv11nhjp4pvw8ssf8bxf503pabwnwnvfzmrxyxixnairwmykg")))) (build-system cmake-build-system) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/c.scm b/gnu/packages/c.scm index 93d829391c..e37c173fc0 100644 --- a/gnu/packages/c.scm +++ b/gnu/packages/c.scm @@ -252,14 +252,14 @@ whose behaviour is inconsistent across *NIX flavours.") (define-public libhx (package (name "libhx") - (version "4.1") + (version "4.2") (source (origin (method url-fetch) (uri (string-append "https://inai.de/files/libhx/" "libHX-" version ".tar.xz")) (sha256 - (base32 "1mifpzxr5kma7gawhv1vbga8j5qi8jgka0axr48v08bdpb83pya2")))) + (base32 "1ri3sxiw5a8br27j7f20s40kihfvq6mmxzcrx68zydiwyxjvf5jj")))) (build-system gnu-build-system) (home-page "https://inai.de/projects/libhx/") (synopsis "C library with common data structures and functions") @@ -553,7 +553,8 @@ portability.") (define-public aws-c-common (package (name "aws-c-common") - (version "0.6.2") + ; Update only when updating aws-crt-cpp. + (version "0.6.11") (source (origin (method git-fetch) (uri (git-reference @@ -562,7 +563,7 @@ portability.") (file-name (git-file-name name version)) (sha256 (base32 - "17iknzqs6dl0ixajplc47ylkyynwpi3x2dxh56wa8ylhgy53d09x")))) + "1v4dhygiynl75y3702lbp9j8kph88j4f2sq39s4lkhn6lmbz5f0f")))) (build-system cmake-build-system) (arguments '(#:configure-flags @@ -577,6 +578,7 @@ portability.") (define-public aws-checksums (package (name "aws-checksums") + ; Update only when updating aws-crt-cpp. (version "0.1.12") (source (origin (method git-fetch) @@ -586,12 +588,13 @@ portability.") (file-name (git-file-name name version)) (sha256 (base32 - "054f2hkmkxhw83q7zsz349k82xk6bkrvlsab088pf7kn9wd4hy4k")) - (patches (search-patches "aws-checksums-cmake-prefix.patch")))) + "054f2hkmkxhw83q7zsz349k82xk6bkrvlsab088pf7kn9wd4hy4k")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common"))))) (inputs `(("aws-c-common" ,aws-c-common))) (synopsis "Amazon Web Services checksum library") @@ -604,6 +607,7 @@ with fallback to efficient C99 software implementations.") (define-public aws-c-event-stream (package (name "aws-c-event-stream") + ; Update only when updating aws-crt-cpp. (version "0.2.7") (source (origin (method git-fetch) @@ -613,12 +617,13 @@ with fallback to efficient C99 software implementations.") (file-name (git-file-name name version)) (sha256 (base32 - "0xwwr7gdgfrphk6j7vk12rgimfim6m4qnj6hg8hgg16cplhvsfzh")) - (patches (search-patches "aws-c-event-stream-cmake-prefix.patch")))) + "0xwwr7gdgfrphk6j7vk12rgimfim6m4qnj6hg8hgg16cplhvsfzh")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common"))))) (propagated-inputs `(("aws-c-common" ,aws-c-common) ("aws-c-io" ,aws-c-io) @@ -637,7 +642,8 @@ communication.") (define-public aws-c-io (package (name "aws-c-io") - (version "0.10.5") + ; Update only when updating aws-crt-cpp. + (version "0.10.9") (source (origin (method git-fetch) (uri (git-reference @@ -646,15 +652,14 @@ communication.") (file-name (git-file-name name version)) (sha256 (base32 - "1jrnzs803jqprnvbw6rqr834qld5sd7flaqzgssp3099m189szpq")) - (patches - (search-patches - "aws-c-io-cmake-prefix.patch" - "aws-c-io-disable-networking-tests.patch")))) + "14rxa3k842fgk43702nz7z9y3clfhvax8j0k93i0c5vg14wj38yp")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common")) + "-DENABLE_NET_TESTS=OFF"))) (propagated-inputs `(("aws-c-cal" ,aws-c-cal) ("aws-c-common" ,aws-c-common) @@ -668,7 +673,8 @@ event-driven, asynchronous network application protocols.") (define-public aws-c-cal (package (name "aws-c-cal") - (version "0.5.11") + ; Update only when updating aws-crt-cpp. + (version "0.5.12") (source (origin (method git-fetch) (uri (git-reference @@ -677,12 +683,13 @@ event-driven, asynchronous network application protocols.") (file-name (git-file-name name version)) (sha256 (base32 - "0rqqk4n56h8sf4q070rhgjwas04j8h0vq4wl1alq5l1rqq72qqdf")) - (patches (search-patches "aws-c-cal-cmake-prefix.patch")))) + "09zqf610x4g2mcjcaf9nh88k6dkw14pi721yr8hxb5rmsx7rlfrb")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common"))))) (propagated-inputs `(("aws-c-common" ,aws-c-common))) (inputs @@ -716,7 +723,8 @@ low level functionality for coroutines.") (define-public aws-c-http (package (name "aws-c-http") - (version "0.6.4") + ; Update only when updating aws-crt-cpp. + (version "0.6.7") (source (origin (method git-fetch) (uri (git-reference @@ -725,15 +733,14 @@ low level functionality for coroutines.") (file-name (git-file-name name version)) (sha256 (base32 - "18xlgz68zizkcp784bs6hkyx0gvp0f1p076i46z653bcd3qa87b4")) - (patches - (search-patches - "aws-c-http-cmake-prefix.patch" - "aws-c-http-disable-networking-tests.patch")))) + "1s06bz6w7355ldyhwjidcpbff7591ch4lwwjcj47a6k2kczdmiz4")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common")) + "-DENABLE_NET_TESTS=OFF"))) (propagated-inputs `(("aws-c-compression" ,aws-c-compression) ("aws-c-io" ,aws-c-io))) @@ -747,7 +754,8 @@ specifications.") (define-public aws-c-compression (package (name "aws-c-compression") - (version "0.2.13") + ; Update only when updating aws-crt-cpp. + (version "0.2.14") (source (origin (method git-fetch) (uri (git-reference @@ -756,12 +764,13 @@ specifications.") (file-name (git-file-name name version)) (sha256 (base32 - "0zqfxi0fdgapfsfgvsindv63pq7vyl1s376qkpv4jgflyb1v6gp5")) - (patches (search-patches "aws-c-compression-cmake-prefix.patch")))) + "0fs3zhhzxsb9nfcjpvfbcq79hal7si2ia1c09scab9a8m264f4vd")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common"))))) (propagated-inputs `(("aws-c-common" ,aws-c-common))) (synopsis "Amazon Web Services compression library") @@ -774,7 +783,8 @@ currently limited to Huffman encoding and decoding.") (define-public aws-c-auth (package (name "aws-c-auth") - (version "0.6.0") + ; Update only when updating aws-crt-cpp. + (version "0.6.4") (source (origin (method git-fetch) (uri (git-reference @@ -783,15 +793,17 @@ currently limited to Huffman encoding and decoding.") (file-name (git-file-name name version)) (sha256 (base32 - "0yh9s6q3ahq39xgvihp2a5cn9h39qlq8wfjc32m0ayi9x739rbqg")) + "120p69lj279yq3d2b81f45kgfrvf32j6m7s03m8hh27w8yd4vbfp")) (patches (search-patches - "aws-c-auth-cmake-prefix.patch" - "aws-c-auth-disable-networking-tests.patch")))) + "aws-c-auth-install-private-headers.patch")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common")) + "-DENABLE_NET_TESTS=OFF"))) (propagated-inputs `(("aws-c-cal" ,aws-c-cal) ("aws-c-common" ,aws-c-common) @@ -807,7 +819,8 @@ authentication.") (define-public aws-c-s3 (package (name "aws-c-s3") - (version "0.1.19") + ; Update only when updating aws-crt-cpp. + (version "0.1.26") (source (origin (method git-fetch) (uri (git-reference @@ -816,15 +829,14 @@ authentication.") (file-name (git-file-name name version)) (sha256 (base32 - "1vkjd8dh99d8qsl7irnbkcdf9vjmcznx0jz186la0472z4h48wjj")) - (patches - (search-patches - "aws-c-s3-cmake-prefix.patch" - "aws-c-s3-disable-networking-tests.patch")))) + "0gaxnwwk0jbvkgjnxcgchq13xmn7jk5vjvjsps6b0vaz6bf12wv8")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common")) + "-DENABLE_NET_TESTS=OFF"))) (propagated-inputs `(("aws-c-auth" ,aws-c-auth) ("aws-c-http" ,aws-c-http))) @@ -838,6 +850,7 @@ Service (S3) protocol for object storage.") (define-public aws-c-mqtt (package (name "aws-c-mqtt") + ; Update only when updating aws-crt-cpp. (version "0.7.8") (source (origin (method git-fetch) @@ -847,12 +860,13 @@ Service (S3) protocol for object storage.") (file-name (git-file-name name version)) (sha256 (base32 - "19j6nw2v36c4yff4p0fbf0748s06fd5r9cp2yakry9ybn1ada99c")) - (patches (search-patches "aws-c-mqtt-cmake-prefix.patch")))) + "19j6nw2v36c4yff4p0fbf0748s06fd5r9cp2yakry9ybn1ada99c")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) + (list "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common"))))) (propagated-inputs `(("aws-c-http" ,aws-c-http) ("aws-c-io" ,aws-c-io))) diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm index 182f52f375..95daa67450 100644 --- a/gnu/packages/ci.scm +++ b/gnu/packages/ci.scm @@ -73,8 +73,8 @@ (file-name (string-append name "-" version "-checkout"))))))) (define-public cuirass - (let ((commit "60190401ce4ccc890629ec3cb22a84a8ab8c2645") - (revision "4")) + (let ((commit "ea09658f13b3f440c2c755882fdfc7459a5d90fa") + (revision "5")) (package (name "cuirass") (version (git-version "1.1.0" revision commit)) @@ -87,7 +87,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "0b0bs32lzk5ck7lw8ac9dj2h70sqc5y430vhi7rcnwj48mdrchma")))) + "18w46v46rbibrkhp4ias1ns636f1dds0vv143x7fcchrw01hk71y")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build utils) diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm index 042658695c..3b10b89aaa 100644 --- a/gnu/packages/cpp.scm +++ b/gnu/packages/cpp.scm @@ -77,6 +77,7 @@ #:use-module (gnu packages popt) #:use-module (gnu packages pretty-print) #:use-module (gnu packages python) + #:use-module (gnu packages pulseaudio) #:use-module (gnu packages tls) #:use-module (gnu packages web) #:use-module (gnu packages xml) @@ -458,9 +459,6 @@ as ordering relation.") intuitive syntax and trivial integration.") (license license:expat))) -(define-public nlohmann-json-cpp - (deprecated-package "nlohmann-json-cpp" json-modern-cxx)) - (define-public xtl (package (name "xtl") @@ -931,11 +929,14 @@ of C++14 components that complements @code{std} and Boost.") (license license:asl2.0))) (define-public aws-crt-cpp - (let* ((commit "c2d6ffa5597825111cc76ad71ffc6aef664d0f25") + (let* ((commit "b6d311d76b504bf8ace5134d3fca0e672c36c9c3") (revision "1")) (package (name "aws-crt-cpp") - (version (git-version "0.14.2" revision commit)) + ; Update only when updating aws-sdk-cpp, and when updating also update + ; versions of library dependencies linked from from + ; https://github.com/awslabs/aws-crt-cpp/tree/{aws-crt-cpp commit}/crt + (version (git-version "0.17.1" revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -944,16 +945,15 @@ of C++14 components that complements @code{std} and Boost.") (file-name (git-file-name name version)) (sha256 (base32 - "0l7iwynk2rgzjnr1hi1raazghmk4m7pj47vdq2kf2cfz0b6v9jf5")) - (patches - (search-patches - "aws-crt-cpp-cmake-prefix.patch" - "aws-crt-cpp-disable-networking-tests.patch")))) + "1n0nlbz91j3ycwwrh9652f0h5qr2sj5b1l0i5sg40ajzs7wvzd32")))) (build-system cmake-build-system) (arguments '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON" - "-DBUILD_DEPS=OFF"))) + (list "-DBUILD_DEPS=OFF" + "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common")) + "-DENABLE_NET_TESTS=OFF"))) (propagated-inputs `(("aws-c-auth" ,aws-c-auth) ("aws-c-cal" ,aws-c-cal) @@ -972,7 +972,9 @@ aws-c-http, aws-c-io, aws-c-mqtt, aws-checksums, and s2n.") (define-public aws-sdk-cpp (package (name "aws-sdk-cpp") - (version "1.9.92") + ; When updating also check for a tagged update to aws-crt-cpp from + ; https://github.com/aws/aws-sdk-cpp/tree/main/crt + (version "1.9.136") (source (origin (method git-fetch) (uri (git-reference @@ -981,24 +983,22 @@ aws-c-http, aws-c-io, aws-c-mqtt, aws-checksums, and s2n.") (file-name (git-file-name name version)) (sha256 (base32 - "0nbq1qivykfg8jmrn8d0k6fcfa5dw9s90wnwddh7ia4zafmby7pd")) - (patches - (search-patches - "aws-sdk-cpp-cmake-prefix.patch" - "aws-sdk-cpp-disable-networking-tests.patch" - "aws-sdk-cpp-disable-werror.patch")))) + "0ap7g7nmbnrcajy3b788bnpqd87dwmg83dhll1q8qzli04bcg47i")))) (build-system cmake-build-system) (arguments '(;; Tests are run during the build phase. #:tests? #f #:configure-flags - '("-DBUILD_SHARED_LIBS=ON" - "-DBUILD_DEPS=OFF"))) + (list "-DBUILD_DEPS=OFF" + "-DBUILD_SHARED_LIBS=ON" + (string-append "-DCMAKE_PREFIX_PATH=" + (assoc-ref %build-inputs "aws-c-common"))))) (propagated-inputs `(("aws-crt-cpp" ,aws-crt-cpp))) (inputs `(("curl" ,curl) ("openssl" ,openssl) + ("pulseaudio" ,pulseaudio) ("zlib" ,zlib))) (synopsis "Amazon Web Services SDK for C++") (description diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index eddd742734..a46562bb34 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -20,6 +20,7 @@ ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 Petr Hodina <phodina@protonmail.com> +;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -45,6 +46,7 @@ #:use-module (guix utils) #:use-module (gnu packages) #:use-module (gnu packages admin) + #:use-module (gnu packages autotools) #:use-module (gnu packages cmake) #:use-module (gnu packages compression) #:use-module (gnu packages cpp) @@ -983,6 +985,60 @@ threads. This makes it robust in face of panics (it won't make your program deadlock, like the standard Barrier).") (license (list license:asl2.0 license:expat)))) +(define-public rust-adblock-0.4 + (package + (name "rust-adblock") + (version "0.4.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/brave/adblock-rust") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (patches (search-patches "rust-adblock-ignore-live-tests.patch")) + (sha256 + (base32 + "0l2iacwkm66z6wc71wy62x2k5xllx94adrqncicxqsx203c3ljpl")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-addr" ,rust-addr-0.14) + ("rust-base64" ,rust-base64-0.13) + ("rust-bitflags" ,rust-bitflags-1) + ("rust-cssparser" ,rust-cssparser-0.25) + ("rust-flate2" ,rust-flate2-1) + ("rust-idna" ,rust-idna-0.2) + ("rust-itertools" ,rust-itertools-0.10) + ("rust-lifeguard" ,rust-lifeguard-0.6) + ("rust-once-cell" ,rust-once-cell-1) + ("rust-percent-encoding" + ,rust-percent-encoding-2) + ("rust-regex" ,rust-regex-1) + ("rust-rmp-serde" ,rust-rmp-serde-0.13) + ("rust-rmp-serde" ,rust-rmp-serde-0.15) + ("rust-seahash" ,rust-seahash-3) + ("rust-selectors" ,rust-selectors-0.21) + ("rust-serde" ,rust-serde-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-twoway" ,rust-twoway-0.2) + ("rust-url" ,rust-url-2)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ("rust-csv" ,rust-csv-1) + ("rust-futures" ,rust-futures-0.3) + ("rust-reqwest" ,rust-reqwest-0.11) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-sha2" ,rust-sha2-0.9) + ("rust-tokio" ,rust-tokio-1.8)))) + (native-inputs `(("pkg-config" ,pkg-config) + ("openssl" ,openssl))) + (home-page "https://github.com/brave/adblock-rust/") + (synopsis "Adblock Plus syntax filter parsing and matching") + (description "This package provides native Rust module for Adblock Plus +syntax (e.g. EasyList, EasyPrivacy) filter parsing and matching.") + (license license:mpl2.0))) + (define-public rust-addr2line-0.14 (package (name "rust-addr2line") @@ -1014,6 +1070,32 @@ deadlock, like the standard Barrier).") Rust, using gimli.") (license (list license:asl2.0 license:expat)))) +(define-public rust-addr-0.14 + (package + (name "rust-addr") + (version "0.14.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "addr" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0w6v0wwv203v0lyvwsq27rwfhvmw7dsmrqc9r3gszbx2974wlk65")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-no-std-net" ,rust-no-std-net-0.5) + ("rust-psl" ,rust-psl-2) + ("rust-psl-types" ,rust-psl-types-2) + ("rust-publicsuffix" ,rust-publicsuffix-2) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/addr-rs/addr") + (synopsis "Parsing domain names") + (description "This package provides a library for parsing domain names.") + (license (list license:expat license:asl2.0)))) + (define-public rust-addr2line-0.11 (package (inherit rust-addr2line-0.14) @@ -2036,6 +2118,30 @@ type.") on every platform.") (license license:expat))) +(define-public rust-approx-0.5 + (package + (name "rust-approx") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "approx" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "17p9g3yl061zdlrqj10npybmng81jz71dzmcanmjgcb35qhgfb87")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-num-complex" ,rust-num-complex-0.4) + ("rust-num-traits" ,rust-num-traits-0.2)))) + (home-page "https://github.com/brendanzab/approx") + (synopsis "Approximate floating point equality comparisons and assertions") + (description + "This crate provides facilities for testing the approximate equality of +floating-point based types, using either relative difference, or units in the +last place (ULPs) comparisons.") + (license license:asl2.0))) + (define-public rust-approx-0.4 (package (name "rust-approx") @@ -2301,6 +2407,25 @@ coverage-guided, mutation-based fuzzers.") that runs on Argon2.") (license license:expat))) +(define-public rust-array-macro-1 + (package + (name "rust-array-macro") + (version "1.0.5") + (source + (origin + (method url-fetch) + (uri (crate-uri "array-macro" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "19mdx2xlppnqwl6rhsbzylx61a0kkp2ql8q16195b7iga977ps86")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://gitlab.com/KonradBorowski/array-macro") + (synopsis "Array multiple elements constructor syntax") + (description "This package implements constructor syntax for arrays with +multiple elements.") + (license (list license:expat license:asl2.0)))) + (define-public rust-array-ops-0.1 (package (name "rust-array-ops") @@ -2811,6 +2936,24 @@ standard library.") "This library provides utilities to handle ASCII characters.") (license license:mpl2.0))) +(define-public rust-assert-0.7 + (package + (name "rust-assert") + (version "0.7.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "assert" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1hnph97yz3hpf71s4rdzcrgd492d1m7rj0k48ymxl1w5d2g8v450")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/stainless-steel/assert") + (synopsis "Assertions for testing") + (description "This package provides assertions for testing.") + (license (list license:asl2.0 license:expat)))) + (define-public rust-assert-cli-0.6 (package (name "rust-assert-cli") @@ -4002,6 +4145,53 @@ methods.") (description "Pull in every source file in a directory as a module.") (license (list license:expat license:asl2.0)))) +(define-public rust-average-0.13 + (package + (name "rust-average") + (version "0.13.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "average" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1c97m8yagvq8r6qgd3harm5vnkdbld4mxg9byyxh6igjsf8wfgl4")))) + (build-system cargo-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'configure 'patch-Cargo.toml + (lambda _ + (substitute* '("guix-vendor/rust-average-0.13.1.tar.gz/Cargo.toml" + "Cargo.toml") + ;; The resolver feature is not supported by this version of Cargo. + (("resolver = \"2\".*") "") + ;; Relax! + (("1.3") ,(package-version rust-byteorder-1)))))) + #:cargo-inputs + (("rust-easy-cast" ,rust-easy-cast-0.4) + ("rust-float-ord" ,rust-float-ord-0.3) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rayon" ,rust-rayon-1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-big-array" ,rust-serde-big-array-0.3) + ("rust-serde-derive" ,rust-serde-derive-1)) + #:cargo-development-inputs + (("rust-bencher" ,rust-bencher-0.1) + ("rust-byteorder" ,rust-byteorder-1) + ("rust-proptest" ,rust-proptest-1) + ("rust-quantiles" ,rust-quantiles-0.7) + ("rust-rand" ,rust-rand-0.8) + ("rust-rand-distr" ,rust-rand-distr-0.4) + ("rust-rand-xoshiro" ,rust-rand-xoshiro-0.6) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-streaming-stats" ,rust-streaming-stats-0.2)))) + (home-page "https://github.com/vks/average") + (synopsis "Calculate statistics iteratively") + (description "This crate provides tools for calculating statistics +iteratively in Rust.") + (license (list license:expat license:asl2.0)))) + (define-public rust-average-0.10 (package (name "rust-average") @@ -5228,6 +5418,147 @@ bindings to C and C++ libraries.") ("rust-diff" ,rust-diff-0.1) ("rust-shlex" ,rust-shlex-0.1)))))) +(define-public rust-bio-types-0.12 + (package + (name "rust-bio-types") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "bio-types" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0qww2l3hbxyayhpv16yxzayxxxmvq7wk3j64xsx9rigzzfbdjy9z")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-derive-new" ,rust-derive-new-0.5) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-petgraph" ,rust-petgraph-0.5) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1) + ("rust-strum-macros" ,rust-strum-macros-0.20) + ("rust-thiserror" ,rust-thiserror-1)))) + (home-page "https://rust-bio.github.io") + (synopsis "Common biomedical types for use in rust-bio and rust-htslib") + (description + "This package provides a collection of common biomedical types for use in +rust-bio and rust-htslib.") + (license license:expat))) + +(define-public rust-bio-0.32 + (package + (name "rust-bio") + (version "0.32.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "bio" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1wj6s3hzpx5xhajcnvdabbgpalgghdni7gmlhjl6i9pfh1xiq5pi")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-approx" ,rust-approx-0.3) + ("rust-bio-types" ,rust-bio-types-0.12) + ("rust-bit-set" ,rust-bit-set-0.5) + ("rust-bv" ,rust-bv-0.11) + ("rust-bytecount" ,rust-bytecount-0.6) + ("rust-csv" ,rust-csv-1) + ("rust-custom-derive" ,rust-custom-derive-0.1) + ("rust-enum-map" ,rust-enum-map-0.6) + ("rust-fnv" ,rust-fnv-1) + ("rust-fxhash" ,rust-fxhash-0.2) + ("rust-getset" ,rust-getset-0.0.9) + ("rust-itertools" ,rust-itertools-0.9) + ("rust-itertools-num" ,rust-itertools-num-0.1) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-multimap" ,rust-multimap-0.8) + ("rust-ndarray" ,rust-ndarray-0.13) + ("rust-newtype-derive" ,rust-newtype-derive-0.1) + ("rust-num-integer" ,rust-num-integer-0.1) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-ordered-float" ,rust-ordered-float-1) + ("rust-petgraph" ,rust-petgraph-0.5) + ("rust-quick-error" ,rust-quick-error-1) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-derive" ,rust-serde-derive-1) + ("rust-snafu" ,rust-snafu-0.6) + ("rust-statrs" ,rust-statrs-0.12) + ("rust-strum" ,rust-strum-0.18) + ("rust-strum-macros" ,rust-strum-macros-0.18) + ("rust-triple-accel" ,rust-triple-accel-0.3) + ("rust-vec-map" ,rust-vec-map-0.8)) + #:cargo-development-inputs + (("rust-proptest" ,rust-proptest-0.10)))) + (home-page "https://rust-bio.github.io") + (synopsis "Bioinformatics library for Rust") + (description + "This package provides a bioinformatics library for Rust. This library +provides implementations of many algorithms and data structures that are +useful for bioinformatics, but also in other fields.") + (license license:expat))) + +(define-public rust-bio-0.33 + (package + (name "rust-bio") + (version "0.33.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "bio" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1zaghvazh243x2pg866hjx1zwwpp9qzwkf45iz2fs9af5y661gz5")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-anyhow" ,rust-anyhow-1) + ("rust-approx" ,rust-approx-0.3) + ("rust-bio-types" ,rust-bio-types-0.12) + ("rust-bit-set" ,rust-bit-set-0.5) + ("rust-bv" ,rust-bv-0.11) + ("rust-bytecount" ,rust-bytecount-0.6) + ("rust-csv" ,rust-csv-1) + ("rust-custom-derive" ,rust-custom-derive-0.1) + ("rust-enum-map" ,rust-enum-map-0.6) + ("rust-fnv" ,rust-fnv-1) + ("rust-fxhash" ,rust-fxhash-0.2) + ("rust-getset" ,rust-getset-0.0.9) + ("rust-itertools" ,rust-itertools-0.9) + ("rust-itertools-num" ,rust-itertools-num-0.1) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-multimap" ,rust-multimap-0.8) + ("rust-ndarray" ,rust-ndarray-0.13) + ("rust-newtype-derive" ,rust-newtype-derive-0.1) + ("rust-num-integer" ,rust-num-integer-0.1) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-ordered-float" ,rust-ordered-float-1) + ("rust-pest" ,rust-pest-2) + ("rust-pest-derive" ,rust-pest-derive-2) + ("rust-petgraph" ,rust-petgraph-0.5) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-derive" ,rust-serde-derive-1) + ("rust-statrs" ,rust-statrs-0.13) + ("rust-strum" ,rust-strum-0.19) + ("rust-strum-macros" ,rust-strum-macros-0.19) + ("rust-thiserror" ,rust-thiserror-1) + ("rust-triple-accel" ,rust-triple-accel-0.3) + ("rust-vec-map" ,rust-vec-map-0.8)) + #:cargo-development-inputs + (("rust-proptest" ,rust-proptest-0.10) + ("rust-tempfile" ,rust-tempfile-3)))) + (home-page "https://rust-bio.github.io") + (synopsis "Bioinformatics library for Rust") + (description + "This package provides a bioinformatics library for Rust. This library +provides implementations of many algorithms and data structures that are +useful for bioinformatics, but also in other fields.") + (license license:expat))) + (define-public rust-bit-field-0.10 (package (name "rust-bit-field") @@ -6729,6 +7060,31 @@ constants from build.rs or a script.") (("rust-criterion" ,rust-criterion-0.2) ("rust-quickcheck" ,rust-quickcheck-0.8)))))) +(define-public rust-bv-0.11 + (package + (name "rust-bv") + (version "0.11.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "bv" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0h5kbl54fsccznfixw83xndbripw39y2qkqjwf709p75iqfvnd48")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-feature-probe" ,rust-feature-probe-0.1) + ("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs + (("rust-quickcheck" ,rust-quickcheck-0.6)))) + (home-page "https://github.com/tov/bv-rs") + (synopsis "Bit-vectors and bit-slices") + (description "The main type exported by this library, @code{BitVec}, is a +packed, growable bit-vector. Its API mirrors that of @code{Vec} where +reasonable.") + (license (list license:expat license:asl2.0)))) + (define-public rust-byte-pool-0.2 (package (name "rust-byte-pool") @@ -6807,6 +7163,54 @@ memory usage.") "This package provides a library for interaction with units of bytes.") (license license:expat))) +(define-public rust-bytecheck-0.5 + (package + (name "rust-bytecheck") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "bytecheck" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0q11ap6nqj0rsc8ypwjh918916zlrcrzdgqm175gnpb2yn9axyh1")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bytecheck-derive" ,rust-bytecheck-derive-0.5) + ("rust-log" ,rust-log-0.4) + ("rust-ptr-meta" ,rust-ptr-meta-0.1) + ("rust-simdutf8" ,rust-simdutf8-0.1)))) + (home-page "https://github.com/rkyv/bytecheck") + (synopsis "Type validation framework") + (description "This package provides a type validation framework for +Rust.") + (license license:expat))) + +(define-public rust-bytecheck-derive-0.5 + (package + (name "rust-bytecheck-derive") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "bytecheck_derive" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0grbkwwv5j91n7zrimci6fh4k79flxga3mkjg50jysnyraizi088")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/rkyv/bytecheck") + (synopsis "Derive macro for bytecheck") + (description "This package provides a Derive macro for bytecheck, the type +validation framework for Rust.") + (license license:expat))) + (define-public rust-bytecount-0.6 (package (name "rust-bytecount") @@ -6879,6 +7283,29 @@ in a byte slice, fast.") ("rust-quickcheck" ,rust-quickcheck-0.6) ("rust-rand" ,rust-rand-0.4)))))) +(define-public rust-bytemuck-1.5 + (package + (name "rust-bytemuck") + (version "1.5.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "bytemuck" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "18355qn3r9yp7ibg00r688sjx58g2qsjylwyq15w5b41b46asjss")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-bytemuck-derive" ,rust-bytemuck-derive-1)))) + (home-page "https://github.com/Lokathor/bytemuck") + (synopsis "Crate for mucking around with piles of bytes") + (description + "This package provides a crate for mucking around with piles of bytes.") + (license license:zlib))) + (define-public rust-bytemuck-1 (package (name "rust-bytemuck") @@ -15300,7 +15727,7 @@ Rust.") (define-public rust-duct-0.13 (package (name "rust-duct") - (version "0.13.0") + (version "0.13.5") (source (origin (method url-fetch) @@ -15309,14 +15736,14 @@ Rust.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1ir3884i1yznkfdccqqbcb9v5sdpcgxlv41hgzncrqaljv18r0wj")))) + "13bxiy0y1dck3xz28rqw5ylf2ykv6mk8ww6g8408x26hksjs1ihg")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-libc" ,rust-libc-0.2) ("rust-once-cell" ,rust-once-cell-1) - ("rust-os-pipe" ,rust-os-pipe-0.8) + ("rust-os-pipe" ,rust-os-pipe-0.9) ("rust-shared-child" ,rust-shared-child-0.3)) #:cargo-development-inputs (("rust-tempdir" ,rust-tempdir-0.3)))) @@ -15421,6 +15848,27 @@ programs.") ;("rust-wio" ,rust-wio-0.2) ("rust-winapi" ,rust-winapi-0.3)))))) +(define-public rust-easy-cast-0.4 + (package + (name "rust-easy-cast") + (version "0.4.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "easy-cast" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "13ilmaplp2s4vw1vjh4pwbzk7jdxrn0kpf0rk5sli0s1ikp05lab")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs (("rust-libm" ,rust-libm-0.2)))) + (home-page "https://github.com/kas-gui/easy-cast") + (synopsis "Type conversions which are expected to succeed") + (description "This library is written to make numeric type conversions +easy.") + (license license:asl2.0))) + (define-public rust-easy-parallel-3 (package (name "rust-easy-parallel") @@ -16189,6 +16637,58 @@ accessor functions on enums.") ("rust-quote" ,rust-quote-0.6) ("rust-syn" ,rust-syn-0.15)))))) +(define-public rust-enum-map-derive-0.4 + (package + (name "rust-enum-map-derive") + (version "0.4.6") + (source + (origin + (method url-fetch) + (uri (crate-uri "enum-map-derive" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0mg43p1x90cz604zddk9qzss077v2id04qmmbpa1i7jc637m1i75")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://gitlab.com/KonradBorowski/enum-map") + (synopsis "Macros 1.1 implementation of #[derive(Enum)]") + (description "This package provides a macros 1.1 implementation of +@code{#[derive(Enum)]}.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-enum-map-0.6 + (package + (name "rust-enum-map") + (version "0.6.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "enum-map" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0m8qg32fnjdf6z64j4wmyp935p5838wd31gibkiqpbpl76c9k1s1")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-array-macro" ,rust-array-macro-1) + ("rust-enum-map-derive" ,rust-enum-map-derive-0.4) + ("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs + (("rust-bincode" ,rust-bincode-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-serde-test" ,rust-serde-test-1)))) + (home-page "https://gitlab.com/KonradBorowski/enum-map") + (synopsis "Map with C-like enum keys represented internally as an array") + (description + "This package provides a map with C-like enum keys represented internally +as an array.") + (license (list license:expat license:asl2.0)))) + (define-public rust-enum-primitive-0.1 (package (name "rust-enum-primitive") @@ -16980,7 +17480,7 @@ a result when an allocation error occurs, ala @url{https://github.com/rust-lang/rfcs/blob/master/text/2116-alloc-me-maybe.md,RFC 2116}. The API currently proposes a fallible interface for @code{Vec}, @code{Box}, @code{Arc}, @code{Btree} and @code{Rc}, as well as a -@code{TryClone} trait wich is implemented for primitive Rust traits and a +@code{TryClone} trait which is implemented for primitive Rust traits and a fallible format macro.") (license (list license:expat license:asl2.0)))) @@ -17175,6 +17675,43 @@ is defined in the HTML specification.") floats.") (license (list license:expat license:asl2.0)))) +(define-public rust-fastq-0.6 + (package + (name "rust-fastq") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "fastq" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "177jsfabnk3zl5zml6qvidzjpk53dp62rqjbdhbhr8cg7ms59p60")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-build-flags '("-vv") + #:phases + (modify-phases %standard-phases + ;; This is needed for the parasail-sys package. + (add-after 'unpack 'set-shell-for-configure-script + (lambda _ + (setenv "SHELL" (which "sh")) + (setenv "CONFIG_SHELL" (which "sh"))))) + #:cargo-inputs + (("rust-flate2" ,rust-flate2-1) + ("rust-lz4" ,rust-lz4-1) + ("rust-memchr" ,rust-memchr-2)) + #:cargo-development-inputs + (("rust-bio" ,rust-bio-0.33) + ("rust-parasailors" ,rust-parasailors-0.3)))) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("libtool" ,libtool))) + (home-page "https://github.com/aseyboldt/fastq-rs") + (synopsis "Parser for fastq files") + (description "This package provides a parser for fastq files.") + (license license:expat))) + (define-public rust-fastrand-1 (package (name "rust-fastrand") @@ -17267,6 +17804,28 @@ it.") descriptors limit.") (license license:asl2.0))) +(define-public rust-feature-probe-0.1 + (package + (name "rust-feature-probe") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "feature-probe" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1nhif9zpr2f17gagf0qb0v914wc3jr9sfjzvnpi7b7pcs73ksnl3")))) + (build-system cargo-build-system) + (home-page "https://github.com/tov/feature-probe-rs") + (synopsis "Probe for rustc features from build.rs") + (description "To support multiple versions of Rust, it's often necessary +to conditionally compile parts of our libraries or programs. It's possible to +allow users to specify what features to enable, but detection is better, +because users get all the features that their version of Rust supports. And +while we could check the rustc version, it's better to probe for individual +features. This package probes for rustc features from build.rs.") + (license (list license:expat license:asl2.0)))) + (define-public rust-feed-rs-0.6 (package (name "rust-feed-rs") @@ -17898,6 +18457,27 @@ streams.") (arguments `(#:cargo-inputs (("rust-num" ,rust-num-0.1)))))) +(define-public rust-float-ord-0.3 + (package + (name "rust-float-ord") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "float-ord" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0gbvx6dzz8xvj38bj02cajpqd9p5syxjx9jyqpj8414amr4izs4c")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-development-inputs + (("rust-rand" ,rust-rand-0.8)))) + (home-page "https://github.com/notriddle/rust-float-ord") + (synopsis "Total ordering for floating-point numbers") + (description + "This package provides a total ordering for floating-point numbers") + (license (list license:expat license:asl2.0)))) + (define-public rust-float-ord-0.2 (package (name "rust-float-ord") @@ -20061,6 +20641,30 @@ retrieving random data from system source.") getters and setters on fields.") (license license:expat))) +(define-public rust-getset-0.0.9 + (package + (name "rust-getset") + (version "0.0.9") + (source + (origin + (method url-fetch) + (uri (crate-uri "getset" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0aaldwfs2690rjqg2ygan27l2qa614w2p6zj7k99n36pv2vzbcsv")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/Hoverbear/getset") + (synopsis "Getters and setters for Rust") + (description + "This package provides a procedural macro for generating the most basic +getters and setters on fields.") + (license license:expat))) + (define-public rust-gettext-rs-0.7 (package (name "rust-gettext-rs") @@ -20589,6 +21193,152 @@ libcurl, which is intended to be used with the @code{git2} crate.") (description "Gjson is a JSON parser for Rust.") (license license:expat))) +(define-public rust-glam-0.17 + (package + (name "rust-glam") + (version "0.17.3") + (source + (origin + (method url-fetch) + (uri (crate-uri "glam" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0xm7jdygbxchdvk6k1l1pdag843nkwdm8fikwgp0i1gxgawk45z0")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-approx" ,rust-approx-0.5) + ("rust-bytemuck" ,rust-bytemuck-1.5) + ("rust-mint" ,rust-mint-0.5) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/bitshifter/glam-rs") + (synopsis "3D math library for games and graphics") + (description + "This package provides a simple and fast 3D math library for games and +graphics.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-glam-0.16 + (package + (name "rust-glam") + (version "0.16.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "glam" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "05izbgx93hnjk200144h9yxhy51cbygp2bbaqdj8czngki3w09j1")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t ; TODO: we need a more recent criterion + #:cargo-inputs + (("rust-approx" ,rust-approx-0.4) + ("rust-bytemuck" ,rust-bytemuck-1.5) + ("rust-mint" ,rust-mint-0.5) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/bitshifter/glam-rs") + (synopsis "3D math library for games and graphics") + (description + "This package provides a simple and fast 3D math library for games and +graphics.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-glam-0.15 + (package + (name "rust-glam") + (version "0.15.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "glam" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0jx587lxz9v9m0ph4dlshfgy0abax1zhlbjj5nvkchz4ir7mbfrs")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t ; TODO: we need a more recent criterion + #:cargo-inputs + (("rust-bytemuck" ,rust-bytemuck-1.5) + ("rust-mint" ,rust-mint-0.5) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1) + ("rust-spirv-std" ,rust-spirv-std-0.4)))) + (home-page "https://github.com/bitshifter/glam-rs") + (synopsis "3D math library for games and graphics") + (description + "This package provides a simple and fast 3D math library for games and +graphics.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-glam-0.14 + (package + (name "rust-glam") + (version "0.14.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "glam" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1njk0cskaspc62ywxlzpiszbcb9hhh1yqg2ka105sg0hxgajhf9k")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-bytemuck" ,rust-bytemuck-1.5) + ("rust-mint" ,rust-mint-0.5) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1) + ("rust-spirv-std" ,rust-spirv-std-0.4)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ("rust-rand-xoshiro" ,rust-rand-xoshiro-0.6) + ("rust-serde-json" ,rust-serde-json-1)))) + (home-page "https://github.com/bitshifter/glam-rs") + (synopsis "3D math library for games and graphics") + (description + "This package provides a simple and fast 3D math library for games and +graphics.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-glam-0.13 + (package + (name "rust-glam") + (version "0.13.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "glam" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1ps7f44844ydj7cjr7wk1hn2d83ds1ilq7p9b2vvhr0711b5n5bh")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-bytemuck" ,rust-bytemuck-1.5) + ("rust-mint" ,rust-mint-0.5) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.7) + ("rust-serde" ,rust-serde-1) + ("rust-spirv-std" ,rust-spirv-std-0.4)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3) + ("rust-rand-xoshiro" ,rust-rand-xoshiro-0.4) + ("rust-serde-json" ,rust-serde-json-1)))) + (home-page "https://github.com/bitshifter/glam-rs") + (synopsis "3D math library for games and graphics") + (description + "This package provides a simple and fast 3D math library for games and +graphics.") + (license (list license:expat license:asl2.0)))) + (define-public rust-glium-0.25 (package (name "rust-glium") @@ -21827,7 +22577,7 @@ total runtime size of an object on the heap") (define-public rust-heck-0.3 (package (name "rust-heck") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) @@ -21835,7 +22585,7 @@ total runtime size of an object on the heap") (file-name (string-append name "-" version ".crate")) (sha256 (base32 - "01a2v7yvkiqxakdqz4hw3w3g4sm52ivz9cs3qcsv2arxsmw4wmi0")))) + "1b56s2c1ymdd0qmy31bw0ndhm31hcdamnhg3npp7ssrmc1ag9jw7")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -26484,6 +27234,25 @@ known as zlib).") (license (list license:asl2.0 license:expat)))) +(define-public rust-lifeguard-0.6 + (package + (name "rust-lifeguard") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "lifeguard" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "09iwwy7888i1kfvbrgwpl4xv3pwsz1fbzx54djs3gnvmszdr9gl9")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/zslayton/lifeguard") + (synopsis "Object pool manager in Rust") + (description "This package provides an object pool manager in Rust.") + (license license:expat))) + (define-public rust-line-0.1 (package (name "rust-line") @@ -27888,6 +28657,97 @@ grammars. It provides the subset of the regex crate that only deals with matching, not parsing substrings.") (license license:expat))) +(define-public rust-matrixcompare-core-0.1 + (package + (name "rust-matrixcompare-core") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "matrixcompare-core" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0wqaj028ws2x2h16rf10arwvmpfbmk7afg8b57ahb25i1nrspgdh")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/Andlon/matrixcompare") + (synopsis "Core traits for matrixcompare") + (description "This package provides core traits for matrixcompare.") + (license license:expat))) + +(define-public rust-matrixcompare-0.3 + (package + (name "rust-matrixcompare") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "matrixcompare" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0i84m1jlxmgyw4farhxbfhyb815hrj6ijq23dgb96z7442l2p0rp")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-matrixcompare-core" ,rust-matrixcompare-core-0.1) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-proptest" ,rust-proptest-1)) + #:cargo-development-inputs + (("rust-matrixcompare-mock" ,rust-matrixcompare-mock-0.1) + ("rust-pretty-assertions" ,rust-pretty-assertions-0.6)))) + (home-page "https://github.com/Andlon/matrixcompare") + (synopsis "Tools for convenient comparison of matrices") + (description "This package provides tools for convenient comparison of +matrices.") + (license license:expat))) + +(define-public rust-matrixcompare-0.2 + (package + (name "rust-matrixcompare") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "matrixcompare" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "046x25j9v42syns6g8sp3lv4kad55cr4p2bvvs6kyj85dbcz8hiv")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-matrixcompare-core" ,rust-matrixcompare-core-0.1) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-proptest" ,rust-proptest-0.10)))) + (home-page "https://github.com/Andlon/matrixcompare") + (synopsis "Tools for convenient comparison of matrices") + (description "This package provides tools for convenient comparison of +matrices.") + (license license:expat))) + +(define-public rust-matrixcompare-mock-0.1 + (package + (name "rust-matrixcompare-mock") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "matrixcompare-mock" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1iqk7p9a3y057qzjjz4hfc1kq48vb76bf1lljqcm5r6xxmlz785y")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-matrixcompare-core" ,rust-matrixcompare-core-0.1) + ("rust-num" ,rust-num-0.3) + ("rust-proptest" ,rust-proptest-0.10)))) + (home-page "https://github.com/Andlon/matrixcompare") + (synopsis "Internal mock data structures for testing of matrixcompare") + (description "This package provides internal mock data structures for +testing of matrixcompare.") + (license license:expat))) + (define-public rust-matrixmultiply-0.3 (package (name "rust-matrixmultiply") @@ -29602,6 +30462,28 @@ which defines a default trait implementation, and @code{trait_impl} which uses a default trait implementation you've defined.") (license license:lgpl2.1+))) +(define-public rust-multimap-0.8 + (package + (name "rust-multimap") + (version "0.8.3") + (source + (origin + (method url-fetch) + (uri (crate-uri "multimap" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0sicyz4n500vdhgcxn4g8jz97cp1ijir1rnbgph3pmx9ckz4dkp5")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs + (("rust-serde-test" ,rust-serde-test-1)))) + (home-page "https://github.com/havarnov/multimap") + (synopsis "Multimap implementation") + (description "This package provides a multimap implementation.") + (license (list license:expat license:asl2.0)))) + (define-public rust-multipart-0.18 (package (name "rust-multipart") @@ -29869,6 +30751,64 @@ quick compile time, and minimal dependencies.") #:cargo-inputs (("rust-rayon" ,rust-rayon-1)))))) +(define-public rust-nalgebra-0.26 + (package + (name "rust-nalgebra") + (version "0.26.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "nalgebra" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "01hxksmgg17c4k2rzjx1h8kkjbw9rm81dsancg459zh2zrcisva7")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:phases + (modify-phases %standard-phases + (add-after 'configure 'patch-Cargo.toml + (lambda _ + (substitute* '("Cargo.toml" + "guix-vendor/rust-nalgebra-0.26.2.tar.gz/Cargo.toml" + "guix-vendor/rust-average-0.13.1.tar.gz/Cargo.toml") + ;; The resolver feature is not supported by this version of Cargo. + (("resolver = \"2\".*") ""))))) + #:cargo-inputs + (("rust-abomonation" ,rust-abomonation-0.7) + ("rust-alga" ,rust-alga-0.9) + ("rust-approx" ,rust-approx-0.4) + ("rust-bytemuck" ,rust-bytemuck-1.5) + ("rust-glam" ,rust-glam-0.13) + ("rust-matrixcompare-core" ,rust-matrixcompare-core-0.1) + ("rust-matrixmultiply" ,rust-matrixmultiply-0.3) + ("rust-mint" ,rust-mint-0.5) + ("rust-num-complex" ,rust-num-complex-0.3) + ("rust-num-rational" ,rust-num-rational-0.3) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-pest" ,rust-pest-2) + ("rust-pest-derive" ,rust-pest-derive-2) + ("rust-proptest" ,rust-proptest-1) + ("rust-quickcheck" ,rust-quickcheck-1) + ("rust-rand" ,rust-rand-0.8) + ("rust-rand-distr" ,rust-rand-distr-0.4) + ("rust-serde" ,rust-serde-1) + ("rust-simba" ,rust-simba-0.4) + ("rust-typenum" ,rust-typenum-1)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.2) + ("rust-itertools" ,rust-itertools-0.10) + ("rust-matrixcompare" ,rust-matrixcompare-0.2) + ("rust-rand-isaac" ,rust-rand-isaac-0.3) + ("rust-rand-xorshift" ,rust-rand-xorshift-0.3) + ("rust-serde-json" ,rust-serde-json-1)))) + (home-page "https://nalgebra.org") + (synopsis "Linear algebra library") + (description + "This package provides a general-purpose linear algebra library with +transformations and statically-sized or dynamically-sized matrices.") + (license license:bsd-3))) + (define-public rust-nalgebra-0.21 (package (name "rust-nalgebra") @@ -29987,6 +30927,42 @@ statically-sized or dynamically-sized matrices.") (("rust-rand-xorshift" ,rust-rand-xorshift-0.1) ("rust-serde-json" ,rust-serde-json-1)))))) +(define-public rust-nalgebra-macros-0.1 + (package + (name "rust-nalgebra-macros") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "nalgebra-macros" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "063jvvvlwmzzxfr4wyiil2cn1yqj3arvghwsr2nk4ilv2jwc1z01")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:phases + (modify-phases %standard-phases + (add-after 'configure 'patch-Cargo.toml + (lambda _ + (substitute* '("Cargo.toml" + "guix-vendor/rust-nalgebra-macros-0.1.0.tar.gz/Cargo.toml" + "guix-vendor/rust-nalgebra-0.26.2.tar.gz/Cargo.toml" + "guix-vendor/rust-average-0.13.1.tar.gz/Cargo.toml") + ;; The resolver feature is not supported by this version of Cargo. + (("resolver = \"2\".*") ""))))) + #:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)) + #:cargo-development-inputs + (("rust-nalgebra" ,rust-nalgebra-0.26)))) + (home-page "https://nalgebra.org") + (synopsis "Procedural macros for nalgebra") + (description "This package provides procedural macros for the nalgebra +linear algebra library.") + (license license:asl2.0))) + (define-public rust-named-pipe-0.4 (package (name "rust-named-pipe") @@ -30734,6 +31710,31 @@ feed reader.") ;; No copyright headers in the source code. LICENSE indicates gpl3. (license license:gpl3))) +(define-public rust-newtype-derive-0.1 + (package + (name "rust-newtype-derive") + (version "0.1.6") + (source + (origin + (method url-fetch) + (uri (crate-uri "newtype-derive" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1v3170xscs65gjx5vl1zjnqp86wngbzw3n2q74ibfnqqkx6x535c")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rustc-version" ,rust-rustc-version-0.1)) + #:cargo-development-inputs + (("rust-custom-derive" ,rust-custom-derive-0.1)))) + (home-page "https://github.com/DanielKeep/rust-custom-derive") + (synopsis "Macros for deriving common traits for newtype structures") + (description + "This crate provides macros for deriving common traits for newtype +structures.") + (license (list license:expat + license:asl2.0)))) + (define-public rust-nibble-vec-0.1 (package (name "rust-nibble-vec") @@ -31159,6 +32160,29 @@ to nl80211 and receive messages.") prove a function can't ever panic.") (license (list license:expat license:asl2.0)))) +(define-public rust-no-std-net-0.5 + (package + (name "rust-no-std-net") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "no-std-net" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0lkilh0wc7big3m5lsn9wqiz2xvj21kgmpbc15z92j93n51wxkhv")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/dunmatt/no-std-net") + (synopsis "Rust's std::net... without the @code{std}") + (description "This package provides Rust's std::net for environment +without the @code{std}.") + (license license:expat))) + (define-public rust-nodrop-0.1 (package (name "rust-nodrop") @@ -33452,10 +34476,10 @@ under its new name.") "This library detects the operating system type and version.") (license license:expat))) -(define-public rust-os-pipe-0.8 +(define-public rust-os-pipe-0.9 (package (name "rust-os-pipe") - (version "0.8.2") + (version "0.9.2") (source (origin (method url-fetch) @@ -33464,12 +34488,12 @@ under its new name.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "049ax8shxik7mm68r2nf7xnrcq3z3p7hz54sbrcxwywxqsjdzs41")))) + "04yjs1hf88jjm17g8a2lr7ibxyyg460rzbgcw9f1yzihq833y8zv")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-nix" ,rust-nix-0.15) + (("rust-libc" ,rust-libc-0.2) ("rust-winapi" ,rust-winapi-0.3)))) (home-page "https://github.com/oconnor663/os_pipe.rs") @@ -33796,6 +34820,72 @@ normally prevent moving a type that has been borrowed from.") (description "@code{pancurses} is a @code{curses} library for Rust.") (license license:expat))) +(define-public rust-parasail-sys-0.2 + (package + (name "rust-parasail-sys") + (version "0.2.5") + (source + (origin + (method url-fetch) + (uri (crate-uri "parasail-sys" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "156fwfdbcfpzmx4k274jqdp8jzmllmdnhd1ibnh7kgd9cp7ni6ac")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-build-flags '("-vv") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-shell-for-configure-script + (lambda _ + (setenv "SHELL" (which "sh")) + (setenv "CONFIG_SHELL" (which "sh"))))) + #:cargo-inputs + (("rust-libc" ,rust-libc-0.2)))) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("libtool" ,libtool))) + (home-page "https://github.com/anp/parasailors") + (synopsis "Bindings to the parasail pairwise genetic sequence alignment library") + (description + "This packgae provides native bindings to the parasail pairwise genetic +sequence alignment library.") + (license license:expat))) + +(define-public rust-parasailors-0.3 + (package + (name "rust-parasailors") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "parasailors" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0qr1qwzrq289njc3aawih15n9a8yy169wyb1gzgwzga0r25dxi3g")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-build-flags '("-vv") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-shell-for-configure-script + (lambda _ + (setenv "SHELL" (which "sh")) + (setenv "CONFIG_SHELL" (which "sh"))))) + #:cargo-inputs + (("rust-libc" ,rust-libc-0.2) + ("rust-parasail-sys" ,rust-parasail-sys-0.2)))) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("libtool" ,libtool))) + (home-page "https://github.com/anp/parasailors") + (synopsis "SIMD accelerated pairwise genetic sequence alignment") + (description "This package provides SIMD accelerated pairwise genetic +sequence alignment tools.") + (license license:expat))) + (define-public rust-parity-tokio-ipc-0.4 (package (name "rust-parity-tokio-ipc") @@ -37893,6 +38983,57 @@ including most strategies and the testing framework itself.") trait of proptest.") (license (list license:expat license:asl2.0)))) +(define-public rust-psl-2 + (package + (name "rust-psl") + (version "2.0.48") + (source + (origin + (method url-fetch) + (uri (crate-uri "psl" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0a2d3z6gi7bwsi4xr6m3kq44wxyr81yqr5z76afv8kfxsc8p1nxh")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-psl-types" ,rust-psl-types-2)) + #:cargo-development-inputs + (("rust-rspec", rust-rspec-1)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-version-requirements + (lambda _ + (substitute* "Cargo.toml" + (("1.0.0") ,(package-version rust-rspec-1)))))))) + (home-page "https://github.com/addr-rs/psl") + (synopsis "Extract root domain and suffix") + (description "This package extracts root domain and suffix from a domain +name.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-psl-types-2 + (package + (name "rust-psl-types") + (version "2.0.7") + (source + (origin + (method url-fetch) + (uri (crate-uri "psl-types" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0kqssn9wgqpl1m26ynv7cvxanfhyjvssi2a3jc2nzpbw7q3ricv6")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/addr-rs/psl-types") + (synopsis "Common types for the public suffix implementation crates") + (description "This package provides common types for the public suffix +implementation crates.") + (license (list license:expat license:asl2.0)))) + (define-public rust-psm-0.1 (package (name "rust-psm") @@ -37916,8 +39057,36 @@ trait of proptest.") stack pointer and inspect the properties of the stack.") (license (list license:isc license:asl2.0)))) +(define-public rust-publicsuffix-2 + (package + (name "rust-publicsuffix") + (version "2.1.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "publicsuffix" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1q9kbcqh9pa06p3kq7d3ksbnqjhs88v5wk5qg89wrgkbmpnp4a99")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-byteorder" ,rust-byteorder-1) + ("rust-hashbrown" ,rust-hashbrown-0.11) + ("rust-idna" ,rust-idna-0.2) + ("rust-psl-types" ,rust-psl-types-2) + ("rust-unicase" ,rust-unicase-2)))) + (home-page "https://github.com/rushmorem/publicsuffix") + (synopsis "Domain name parsing and email address validation") + (description "This package provides robust domain name parsing and RFC +compliant email address validation.") + (license (list license:expat license:asl2.0)))) + (define-public rust-publicsuffix-1 (package + (inherit rust-publicsuffix-2) (name "rust-publicsuffix") (version "1.5.4") (source @@ -37928,7 +39097,6 @@ stack pointer and inspect the properties of the stack.") (sha256 (base32 "0yvmjpywfyypfr17kxiwy6ssykgv8nmcdhfakas6548pfn8a9fiv")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-error-chain" ,rust-error-chain-0.12) @@ -37938,12 +39106,7 @@ stack pointer and inspect the properties of the stack.") ("rust-regex" ,rust-regex-1) ("rust-url" ,rust-url-2)) #:cargo-development-inputs - (("rust-rspec" ,rust-rspec-1)))) - (home-page "https://github.com/rushmorem/publicsuffix") - (synopsis "Domain name parsing and email address validation") - (description "This package provides robust domain name parsing and RFC -compliant email address validation.") - (license (list license:expat license:asl2.0)))) + (("rust-rspec" ,rust-rspec-1)))))) (define-public rust-pulldown-cmark-0.8 (package @@ -39214,6 +40377,41 @@ tools for implementation.") #:cargo-inputs (("rust-rand-core" ,rust-rand-core-0.3)))))) +(define-public rust-rand-distr-0.4 + (package + (name "rust-rand-distr") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_distr" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0brd2946xfapm2bmhmczfbwck041x7khsfhqxw1f24kxis7m8kcn")))) + (build-system cargo-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'configure 'patch-Cargo.toml + (lambda _ + (substitute* '("Cargo.toml" + "guix-vendor/rust-average-0.13.1.tar.gz/Cargo.toml") + ;; The resolver feature is not supported by this version of Cargo. + (("resolver = \"2\".*") ""))))) + #:cargo-inputs + (("rust-average" ,rust-average-0.13) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1) + ("rust-special" ,rust-special-0.8)) + #:cargo-development-inputs + (("rust-rand-pcg" ,rust-rand-pcg-0.3)))) + (home-page "https://rust-random.github.io/book/") + (synopsis "Sampling from random number distributions") + (description "This package provides tool for sampling from random number +distributions.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-distr-0.3 (package (name "rust-rand-distr") @@ -39317,6 +40515,32 @@ generator that uses the HC-128 algorithm.") (arguments `(#:cargo-inputs (("rust-rand-core" ,rust-rand-core-0.3)))))) +(define-public rust-rand-isaac-0.3 + (package + (name "rust-rand-isaac") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_isaac" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0a0b188s960qknwwgvpn7zpq3fzdhvrb0gsm5ir5akqvv4y3gi7s")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rand-core" ,rust-rand-core-0.6) + ("rust-serde" ,rust-serde-1) + ("rust-serde-derive" ,rust-serde-derive-1)) + #:cargo-development-inputs + (("rust-bincode" ,rust-bincode-1)))) + (home-page "https://rust-random.github.io/book/") + (synopsis "ISAAC random number generator") + (description "This package implements the @code{ISAAC} and @code{ISAAC-64} +random number generators. ISAAC stands for \"Indirection, Shift, Accumulate, +Add, and Count\" which are the principal bitwise operations employed.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-isaac-0.2 (package (name "rust-rand-isaac") @@ -39440,6 +40664,33 @@ generator based on timing jitter.") ("rust-wasm-bindgen" ,rust-wasm-bindgen-0.2) ("rust-winapi" ,rust-winapi-0.3)))))) +(define-public rust-rand-pcg-0.3 + (package + (name "rust-rand-pcg") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_pcg" version)) + (file-name (string-append name "-" version ".crate")) + (sha256 + (base32 + "1w47awndfhgcc31zbji66pwndqmc6lsyairqi9b17f82f19riqbx")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rand-core" ,rust-rand-core-0.6) + ("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs + (("rust-bincode" ,rust-bincode-1)))) + (home-page "https://crates.io/crates/rand_pcg") + (synopsis + "Selected PCG random number generators") + (description + "This package implements a selection of PCG random number generators.") + (license (list license:asl2.0 + license:expat)))) + (define-public rust-rand-pcg-0.2 (package (name "rust-rand-pcg") @@ -39563,6 +40814,30 @@ generator based on timing jitter.") (license (list license:asl2.0 license:expat)))) +(define-public rust-rand-xoshiro-0.6 + (package + (name "rust-rand-xoshiro") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_xoshiro" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1ajsic84rzwz5qr0mzlay8vi17swqi684bqvwqyiim3flfrcv5vg")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rand-core" ,rust-rand-core-0.6) + ("rust-serde" ,rust-serde-1)) + #:cargo-development-inputs + (("rust-bincode" ,rust-bincode-1)))) + (home-page "https://rust-random.github.io/book/") + (synopsis "Xoshiro, xoroshiro and splitmix64 random number generators") + (description "This package provides the xoshiro, xoroshiro and splitmix64 +random number generators.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-xoshiro-0.4 (package (name "rust-rand-xoshiro") @@ -39633,6 +40908,24 @@ random number generators.") #:cargo-development-inputs (("rust-rand" ,rust-rand-0.6)))))) +(define-public rust-random-0.12 + (package + (name "rust-random") + (version "0.12.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "random" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "03s2c59vzcr5fmxbhlhxvrsnwgic488jl4br1k4q369lhls3mlcp")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/stainless-steel/random") + (synopsis "Sources of randomness") + (description "The package provides sources of randomness.") + (license (list license:asl2.0 license:expat)))) + (define-public rust-random-fast-rng-0.1 (package (name "rust-random-fast-rng") @@ -40283,8 +41576,8 @@ memory to speed up reallocation.") ("rust-regex-syntax" ,rust-regex-syntax-0.6)) #:cargo-development-inputs (("rust-lazy-static" ,rust-lazy-static-1) - ("rust-quickcheck" ,rust-quickcheck-0.8) - ("rust-rand" ,rust-rand-0.6)))) + ("rust-quickcheck" ,rust-quickcheck-1) + ("rust-rand" ,rust-rand-0.8)))) (home-page "https://github.com/rust-lang/regex") (synopsis "Regular expressions for Rust") (description @@ -41074,17 +42367,40 @@ writers and readers for primitive values with direct mapping between binary MessagePack format.") (license license:expat))) -(define-public rust-rmp-serde-0.14 +(define-public rust-rmp-serde-0.15 (package (name "rust-rmp-serde") - (version "0.14.4") + (version "0.15.5") (source (origin (method url-fetch) (uri (crate-uri "rmp-serde" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1n2jn3yj5zbjhz5lah98yylpzhfc1c0h5fcksjp75r3gj86dgrsc")))) + (base32 "178f4qlicldm9iy74q4wdqldk5i11p1ad30wzs9avx04mpwwygkj")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-byteorder" ,rust-byteorder-1) + ("rust-rmp" ,rust-rmp-0.8) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/3Hren/msgpack-rust") + (synopsis "Serde bindings for RMP") + (description "This crate provides Serde bindings for RMP.") + (license license:expat))) + +(define-public rust-rmp-serde-0.13 + (package + (name "rust-rmp-serde") + (version "0.13.7") + (source + (origin + (method url-fetch) + (uri (crate-uri "rmp-serde" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1lqclnffx1b3r1faicscmk9j21mijl9bj7ywgjps77vf8ic1s7h1")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -42887,7 +44203,7 @@ require unstable language features.") `(#:skip-build? #t #:cargo-inputs (("rust-semver" ,rust-semver-0.11)))) - (home-page "https://github.com/Kimundi/rustc-version-rs") + (home-page "https://github.com/djc/rustc-version-rs") (synopsis "Library for querying the version of an installed rustc compiler") (description "This package provides a library for querying the version of an installed @@ -42912,6 +44228,22 @@ rustc compiler.") `(#:skip-build? #t #:cargo-inputs (("rust-semver" ,rust-semver-0.9)))))) +(define-public rust-rustc-version-0.1 + (package + (inherit rust-rustc-version-0.3) + (name "rust-rustc-version") + (version "0.1.7") + (source + (origin + (method url-fetch) + (uri (crate-uri "rustc_version" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1160jjsqhqr25cvhr48hmpp8v61bjvjcnxzb0cyf4373lmp3gxf5")))) + (arguments + `(#:cargo-inputs + (("rust-semver" ,rust-semver-0.1)))))) + (define-public rust-rustdoc-stripper-0.1 (package (name "rust-rustdoc-stripper") @@ -43620,6 +44952,55 @@ sub-processes using a fork-like interface.") (base32 "1n3iw9kaq70dw1rvvma0gjwydbj0f2mvvqvrva69f5cl6yv1dnd0")))))) +(define-public rust-rkyv-0.6 + (package + (name "rust-rkyv") + (version "0.6.7") + (source + (origin + (method url-fetch) + (uri (crate-uri "rkyv" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "01wsn0i8gsw958j892w8i4fyzjdsyhrh7c5zajig049kbqz5n4yb")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bytecheck" ,rust-bytecheck-0.5) + ("rust-memoffset" ,rust-memoffset-0.6) + ("rust-ptr-meta" ,rust-ptr-meta-0.1) + ("rust-rkyv-derive" ,rust-rkyv-derive-0.6) + ("rust-seahash" ,rust-seahash-4)))) + (home-page "https://github.com/rkyv/rkyv") + (synopsis "Zero-copy deserialization framework for Rust") + (description "Rkyv is a zero-copy deserialization framework for Rust.") + (license license:expat))) + +(define-public rust-rkyv-derive-0.6 + (package + (name "rust-rkyv-derive") + (version "0.6.7") + (source + (origin + (method url-fetch) + (uri (crate-uri "rkyv_derive" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1mc7rnps41gdywahsffqlypsp9jqmp0r6hlh2nxm31bddfgli3xs")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/rkyv/rkyv") + (synopsis "Derive macro for zero-copy deserialization framework") + (description "This package provides a Derive macro for the rkyv +deserialization framework.") + (license license:expat))) + (define-public rust-ryu-1 (package (name "rust-ryu") @@ -43846,6 +45227,28 @@ quickly convert floating point numbers to decimal strings.") computation (experimental)") (license (list license:asl2.0 license:expat)))) +(define-public rust-safe-arch-0.5 + (package + (name "rust-safe-arch") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "safe_arch" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "01ffy9aw9v1n4bcwl525zw3gnh18jk7aq38iqcn51bwnjrnkvzy1")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bytemuck" ,rust-bytemuck-1)))) + (home-page "https://github.com/Lokathor/safe_arch") + (synopsis "Access core::arch safely") + (description "This package exposes @code{core::arch} safely via +@code{#[cfg()]}.") + (license (list license:zlib license:asl2.0 license:expat)))) + (define-public rust-safemem-0.3 (package (name "rust-safemem") @@ -44463,6 +45866,26 @@ Pwrite traits from the scroll crate.") proven statistical guarantees.") (license license:expat))) +(define-public rust-seahash-4 + (package + (name "rust-seahash") + (version "4.1.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "seahash" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0sxsb64np6bvnppjz5hg4rqpnkczhsl8w8kf2a5lr1c08xppn40w")))) + (build-system cargo-build-system) + (arguments '(#:skip-build? #t)) + (home-page "https://gitlab.redox-os.org/redox-os/seahash") + (synopsis "Hash function with proven statistical guarantees") + (description + "This package provides a fast, portable hash function with proven +statistical guarantees.") + (license license:expat))) + (define-public rust-seccomp-sys-0.1 (package (name "rust-seccomp-sys") @@ -44764,6 +46187,21 @@ macOS and iOS.") (description "This package provides CSS Selectors matching for Rust.") (license license:mpl2.0))) +(define-public rust-selectors-0.21 + (package + (inherit rust-selectors-0.22) + (name "rust-selectors") + (version "0.21.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "selectors" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "11icfj8ix8fqjsnw3dqw83bmhd5qdhxzq2klb486akyypq0b31hv")))))) + (define-public rust-sema-0.1 (package (name "rust-sema") @@ -44888,6 +46326,25 @@ macOS and iOS.") "Semantic version parsing and comparison.") (license (list license:expat license:asl2.0)))) +(define-public rust-semver-0.1 + (package + (name "rust-semver") + (version "0.1.20") + (source + (origin + (method url-fetch) + (uri (crate-uri "semver" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1b10m0hxrr947gp41lj9vnmgl5ddwx3d41vnblsg06ppvkz11x6l")))) + (build-system cargo-build-system) + (home-page "https://github.com/dtolnay/semver") + (synopsis "Parser and evaluator for Cargo's flavor of Semantic Versioning") + (description + "This package provides a parser and evaluator for Cargo's flavor of +Semantic Versioning.") + (license (list license:expat license:asl2.0)))) + (define-public rust-semver-parser-0.10 (package (name "rust-semver-parser") @@ -44962,6 +46419,49 @@ also have to make sure that the wrapper is dropped from within the original thread. If any of these constraints is violated, a panic occurs.") (license (list license:expat license:asl2.0)))) +(define-public rust-seq-io-0.3 + (package + (name "rust-seq-io") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "seq_io" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1r643ihyba62vbr5l085mzz3gzfy4iba33nm2l981smvwcb8rzf6")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-buf-redux" ,rust-buf-redux-0.8) + ("rust-crossbeam" ,rust-crossbeam-0.8) + ("rust-memchr" ,rust-memchr-2) + ("rust-scoped-threadpool" ,rust-scoped-threadpool-0.1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-derive" ,rust-serde-derive-1)) + #:cargo-development-inputs + (("rust-bio" ,rust-bio-0.32) + ("rust-criterion" ,rust-criterion-0.3) + ("rust-fastq" ,rust-fastq-0.6) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-matches" ,rust-matches-0.1) + ("rust-rand" ,rust-rand-0.7) + ("rust-rand-isaac" ,rust-rand-isaac-0.2)))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/markschl/seq_io") + (synopsis "Fast FASTA, FASTQ and FASTX parsing") + (description "This library provides readers for the the following sequence +formats: + +@itemize +@item FASTA, +@item FASTQ (including multi-line FASTQ), +@item FASTX: Automatic recognition of the sequence format (either FASTA or FASTQ). +@end itemize +") + (license license:expat))) + (define-public rust-seq-macro-0.2 (package (name "rust-seq-macro") @@ -45166,6 +46666,29 @@ rules are rather complex. This crate implements the whole grammar." ) `(#:skip-build? #t #:cargo-inputs (("rust-num" ,rust-num-0.2)))))) +(define-public rust-serde-big-array-0.3 + (package + (name "rust-serde-big-array") + (version "0.3.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "serde-big-array" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0qpy3nk3dpxrrmcfmcnsijad10yi0jxy1x6gc6bbwywma9vhxchq")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-serde" ,rust-serde-1) + ("rust-serde-derive" ,rust-serde-derive-1)) + #:cargo-development-inputs + (("rust-serde-json" ,rust-serde-json-1)))) + (home-page "https://github.com/est31/serde-big-array") + (synopsis "Big array helper for serde") + (description "This package provides a big array helper for serde.") + (license (list license:expat license:asl2.0)))) + (define-public rust-serde-big-array-0.2 (package (name "rust-serde-big-array") @@ -45441,7 +46964,7 @@ framework.") (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-rmp-serde" ,rust-rmp-serde-0.14) + (("rust-rmp-serde" ,rust-rmp-serde-0.15) ("rust-serde" ,rust-serde-1) ("rust-serde-json" ,rust-serde-json-1) ("rust-toml" ,rust-toml-0.5) @@ -47091,6 +48614,65 @@ facilitate the use of SIMD-based @dfn{Array of Struct of Array} (AoSoA) storage pattern in Rust.") (license license:bsd-3))) +(define-public rust-simba-0.5 + (package + (inherit rust-simba-0.1) + (name "rust-simba") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "simba" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0p1x1ndajy4j3dr9zbh79cz5k0hbj4p9bagd7cj00gc5aws0d0lf")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-approx" ,rust-approx-0.5) + ("rust-cordic" ,rust-cordic-0.1) + ("rust-decimal" ,rust-decimal-2) + ("rust-fixed" ,rust-fixed-1) + ("rust-libm" ,rust-libm-0.2) + ("rust-num-complex" ,rust-num-complex-0.4) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-packed-simd-2" ,rust-packed-simd-2-0.3) + ("rust-paste" ,rust-paste-1) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1) + ("rust-wide" ,rust-wide-0.6)))) + (license license:asl2.0))) + +(define-public rust-simba-0.4 + (package + (inherit rust-simba-0.1) + (name "rust-simba") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "simba" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0k2zp645jby5s070agvqha3xqbc0gkkk3a4v7k8z724iamasjcji")))) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-approx" ,rust-approx-0.4) + ("rust-cordic" ,rust-cordic-0.1) + ("rust-decimal" ,rust-decimal-2) + ("rust-fixed" ,rust-fixed-1) + ("rust-libm" ,rust-libm-0.2) + ("rust-num-complex" ,rust-num-complex-0.3) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-packed-simd-2" ,rust-packed-simd-2-0.3) + ("rust-paste" ,rust-paste-1) + ("rust-rand" ,rust-rand-0.8) + ("rust-serde" ,rust-serde-1) + ("rust-wide" ,rust-wide-0.6)))) + (license license:asl2.0))) + (define-public rust-simd-0.2 (package (name "rust-simd") @@ -47919,6 +49501,55 @@ control on the fields.") clone.") (license (list license:expat license:asl2.0)))) +(define-public rust-snafu-derive-0.6 + (package + (name "rust-snafu-derive") + (version "0.6.10") + (source + (origin + (method url-fetch) + (uri (crate-uri "snafu-derive" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0nri7ma06g5kimpcdcm8359a55nmps5f3kcngy0j6bin7jhfy20m")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/shepmaster/snafu") + (synopsis "Ergonomic error handling library") + (description "Snafu aims to be an ergonomic error handling library. This +package provides derive macros.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-snafu-0.6 + (package + (name "rust-snafu") + (version "0.6.10") + (source + (origin + (method url-fetch) + (uri (crate-uri "snafu" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "19wwqxwb85pl040qk5xylj0vlznib3xzy9hcv2q0h8qv4qy2vcga")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-backtrace" ,rust-backtrace-0.3) + ("rust-doc-comment" ,rust-doc-comment-0.3) + ("rust-futures" ,rust-futures-0.3) + ("rust-futures" ,rust-futures-0.1) + ("rust-futures-core" ,rust-futures-core-0.3) + ("rust-pin-project" ,rust-pin-project-0.4) + ("rust-snafu-derive" ,rust-snafu-derive-0.6)))) + (home-page "https://github.com/shepmaster/snafu") + (synopsis "Ergonomic error handling library") + (description "Snafu aims to be an ergonomic error handling library.") + (license (list license:expat license:asl2.0)))) + (define-public rust-snailquote-0.3 (package (name "rust-snailquote") @@ -48142,6 +49773,29 @@ track of where each new file and line starts.") (description "This package provides basic sourcemap handling for Rust.") (license license:bsd-3))) +(define-public rust-special-0.8 + (package + (name "rust-special") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "special" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0dknpky1bbl7xp4qwp3vjqjarfl846mk6irs2z7mvdsr843mx9i4")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-libc" ,rust-libc-0.2)) + #:cargo-development-inputs + (("rust-assert" ,rust-assert-0.7) + ("rust-random" ,rust-random-0.12)))) + (home-page "https://github.com/stainless-steel/special") + (synopsis "Special functions") + (description "The package provides so-called special functions.") + (license (list license:asl2.0 license:expat)))) + (define-public rust-speculate-0.1 (package (name "rust-speculate") @@ -48157,11 +49811,11 @@ track of where each new file and line starts.") "0ph01n3fqkmnfr1wd13dqsi4znv06xy6p4h3hqqdzk81r0r5vd1w")))) (build-system cargo-build-system) (arguments - `(#:skip-build? #t + `(#:tests? #f #:cargo-inputs (("rust-proc-macro2" ,rust-proc-macro2-0.4) - ("rust-quote" ,rust-quote-1) - ("rust-syn" ,rust-syn-0.15) + ("rust-quote" ,rust-quote-0.6) + ("rust-syn" ,rust-syn-0.14) ("rust-unicode-xid" ,rust-unicode-xid-0.1)))) (home-page "https://github.com/utkarshkukreti/speculate.rs") (synopsis "RSpec inspired testing framework for Rust") @@ -48251,6 +49905,77 @@ ready. This will probably use a lot of CPU, so be careful when you use it.") provided by @code{lock_api}.") (license (list license:expat license:asl2.0)))) +(define-public rust-spirv-types-0.4 + (package + (name "rust-spirv-types") + (version "0.4.0-alpha.12") + (source + (origin + (method url-fetch) + (uri (crate-uri "spirv-types" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0sxcic2n04xzywww3c7mj9ah8iwr20vz3d6xvsgla1y7gs7lpk3i")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/EmbarkStudios/rust-gpu") + (synopsis "SPIR-V types shared between spirv-std and spirv-std-macros") + (description "This package provides SPIR-V types shared between spirv-std +and spirv-std-macros.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-spirv-std-macros-0.4 + (package + (name "rust-spirv-std-macros") + (version "0.4.0-alpha.12") + (source + (origin + (method url-fetch) + (uri (crate-uri "spirv-std-macros" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "19cc15vq9ybdap39qxpf4vsz5q6li21mzgv47zqbyj5vvwaqazi0")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-heck" ,rust-heck-0.3) + ("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-spirv-types" ,rust-spirv-types-0.4) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/EmbarkStudios/rust-gpu") + (synopsis "Macros for spirv-std") + (description "This package provides macros for spirv-std.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-spirv-std-0.4 + (package + (name "rust-spirv-std") + ;; We use a slightly older version here, because of problems building glam + ;; 0.13.1 with more recent versions. + (version "0.4.0-alpha.7") + (source + (origin + (method url-fetch) + (uri (crate-uri "spirv-std" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "14npd838bqnw09iab0zq94xs4yl69m6c0cdfzxa9fal0zxqlqv3j")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bitflags" ,rust-bitflags-1) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-spirv-std-macros" ,rust-spirv-std-macros-0.4) + ("rust-spirv-types" ,rust-spirv-types-0.4)))) + (home-page "https://github.com/EmbarkStudios/rust-gpu") + (synopsis "Standard functions and types for SPIR-V") + (description "This package provides standard functions and types for +SPIR-V.") + (license (list license:expat license:asl2.0)))) + (define-public rust-spmc-0.3 (package (name "rust-spmc") @@ -48546,6 +50271,88 @@ map.") (description "This package provides a simple statistics library.") (license license:expat))) +(define-public rust-statrs-0.14 + (package + (name "rust-statrs") + (version "0.14.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "statrs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1bdff4rsghp9hj5i5ynl6iw3pyzprd65cbf8ihmgvyv190a1y30y")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:phases + (modify-phases %standard-phases + (add-after 'configure 'patch-Cargo.toml + (lambda _ + (substitute* '("Cargo.toml" + "guix-vendor/rust-average-0.13.1.tar.gz/Cargo.toml" + "guix-vendor/rust-nalgebra-0.26.2.tar.gz/Cargo.toml") + ;; The resolver feature is not supported by this version of Cargo. + (("resolver = \"2\".*") ""))))) + #:cargo-inputs + (("rust-approx" ,rust-approx-0.4) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-nalgebra" ,rust-nalgebra-0.26) + ("rust-num-traits" ,rust-num-traits-0.2) + ("rust-rand" ,rust-rand-0.8)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3)))) + (home-page "https://github.com/statrs-dev/statrs") + (synopsis "Statistical computing library for Rust") + (description "This package provides a statistical computing library for +Rust.") + (license license:expat))) + +(define-public rust-statrs-0.13 + (package + (name "rust-statrs") + (version "0.13.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "statrs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0r00b60zlsn6srb6m6bzbw3w5cyihcy4w2rfjav64x4viy5bad0y")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-nalgebra" ,rust-nalgebra-0.19) + ("rust-rand" ,rust-rand-0.7)) + #:cargo-development-inputs + (("rust-criterion" ,rust-criterion-0.3)))) + (home-page "https://github.com/statrs-dev/statrs") + (synopsis "Statistical computing library for Rust") + (description "This package provides a statistical computing library for +Rust.") + (license license:expat))) + +(define-public rust-statrs-0.12 + (package + (name "rust-statrs") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "statrs" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "10hk9194ig21w08947yavf4l97g0106ph4xxlzn8ps2kwrnnzqfc")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rand" ,rust-rand-0.7)))) + (home-page "https://github.com/statrs-dev/statrs") + (synopsis "Statistical computing library for Rust") + (description "This package provides a statistical computing library for +Rust.") + (license license:expat))) + (define-public rust-stb-truetype-0.3 (package (name "rust-stb-truetype") @@ -52991,10 +54798,10 @@ to a style defined by John Gruber for post titles on his website ``Daring Fireball''.") (license license:expat))) -(define-public rust-tokio-1 +(define-public rust-tokio-1.8 (package (name "rust-tokio") - (version "1.2.0") + (version "1.8.0") (source (origin (method url-fetch) @@ -53002,13 +54809,12 @@ Fireball''.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0fmfykdp29hjq5264mp6sa4c0wp5mlimbi0dd9mrxsk5qq20s6g8")))) + "1m18rs51wz6s7dwdwzr0j63kh815x4dx9k0f2c485crs7fqjw32p")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs - (("rust-autocfg" ,rust-autocfg-1) - ("rust-bytes" ,rust-bytes-1) + (("rust-bytes" ,rust-bytes-1) ("rust-libc" ,rust-libc-0.2) ("rust-memchr" ,rust-memchr-2) ("rust-mio" ,rust-mio-0.7) @@ -53019,7 +54825,16 @@ Fireball''.") ("rust-signal-hook-registry" ,rust-signal-hook-registry-1) ("rust-tokio-macros" ,rust-tokio-macros-1) ("rust-tracing" ,rust-tracing-0.1) - ("rust-winapi" ,rust-winapi-0.3)))) + ("rust-winapi" ,rust-winapi-0.3)) + #:cargo-development-inputs + (("rust-async-stream" ,rust-async-stream-0.3) + ("rust-autocfg" ,rust-autocfg-1) + ("rust-nix" ,rust-nix-0.19) + ("rust-futures" ,rust-futures-0.3) + ("rust-proptest" ,rust-proptest-1) + ("rust-sokcet2-0.4" ,rust-socket2-0.4) + ("rust-tokio-stream" ,rust-tokio-stream-0.1) + ("rust-tokio-test" ,rust-tokio-test-0.4)))) (home-page "https://tokio.rs") (synopsis "Event-driven, non-blocking I/O platform") (description @@ -53027,6 +54842,36 @@ Fireball''.") writing asynchronous I/O backed applications.") (license license:expat))) +(define-public rust-tokio-1 + (package + (inherit rust-tokio-1.8) + (name "rust-tokio") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "tokio" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0fmfykdp29hjq5264mp6sa4c0wp5mlimbi0dd9mrxsk5qq20s6g8")))) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-autocfg" ,rust-autocfg-1) + ("rust-bytes" ,rust-bytes-1) + ("rust-libc" ,rust-libc-0.2) + ("rust-memchr" ,rust-memchr-2) + ("rust-mio" ,rust-mio-0.7) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-once-cell" ,rust-once-cell-1) + ("rust-parking-lot" ,rust-parking-lot-0.11) + ("rust-pin-project-lite" ,rust-pin-project-lite-0.2) + ("rust-signal-hook-registry" ,rust-signal-hook-registry-1) + ("rust-tokio-macros" ,rust-tokio-macros-1) + ("rust-tracing" ,rust-tracing-0.1) + ("rust-winapi" ,rust-winapi-0.3)))))) + (define-public rust-tokio-0.3 (package (inherit rust-tokio-1) @@ -55342,6 +57187,40 @@ recycle bin.") "This package provides a library for visualizing tree structured data.") (license license:expat))) +(define-public rust-triple-accel-0.4 + (package + (name "rust-triple-accel") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "triple_accel" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0qqyhl1pdvmfbx9fgw5jc15j42d0j1i7b6pzn42zsbzvbp4qn112")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/Daniel-Liu-c0deb0t/triple_accel") + (synopsis "Edit distance routines accelerated using SIMD") + (description + "This package provides Rust edit distance routines accelerated using +SIMD. It supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, +etc. distance calculations and string search.") + (license license:expat))) + +(define-public rust-triple-accel-0.3 + (package + (inherit rust-triple-accel-0.4) + (name "rust-triple-accel") + (version "0.3.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "triple_accel" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0v795l496crk3h6yff9zh1cjyrh5s9v23fbgccc4dpz25z70jav2")))))) + (define-public rust-trust-dns-https-0.20 (package (name "rust-trust-dns-https") @@ -56382,17 +58261,17 @@ design abstracts away all the internals of the WebSocket protocol but still makes them accessible for those who wants full control over the network.") (license (list license:expat license:asl2.0)))) -(define-public rust-twoway-0.1 +(define-public rust-twoway-0.2 (package (name "rust-twoway") - (version "0.1.8") + (version "0.2.2") (source (origin (method url-fetch) (uri (crate-uri "twoway" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "1lbf64snscr3vz71jbl6i2c8zr2ndsiqbk6316z39fj1a8mipcar")))) + (base32 "0iqb54firzb8jinl2674vz8s6c4h30842sa3v9pcs93w1m3gnzy5")))) (build-system cargo-build-system) (arguments `(#:skip-build? #t @@ -56408,6 +58287,20 @@ makes them accessible for those who wants full control over the network.") strings.") (license (list license:expat license:asl2.0)))) +(define-public rust-twoway-0.1 + (package + (inherit rust-twoway-0.2) + (name "rust-twoway") + (version "0.1.8") + (source + (origin + (method url-fetch) + (uri (crate-uri "twoway" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1lbf64snscr3vz71jbl6i2c8zr2ndsiqbk6316z39fj1a8mipcar")))))) + (define-public rust-typeable-0.1 (package (name "rust-typeable") @@ -59412,6 +61305,25 @@ hardware of various targets. Both in terms of explicit SIMD usage and also in terms of allowing LLVM's auto-vectorizer to do its job.") (license license:zlib))) +(define-public rust-wide-0.6 + (package + (inherit rust-wide-0.4) + (name "rust-wide") + (version "0.6.5") + (source + (origin + (method url-fetch) + (uri (crate-uri "wide" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "16yqf8xsvns21clg3rk8nljq4qnsfqg240smbjqa0z520k3fgfs6")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-bytemuck" ,rust-bytemuck-1) + ("rust-safe-arch" ,rust-safe-arch-0.5)))) + (license (list license:zlib license:asl2.0 license:expat)))) + (define-public rust-widestring-0.4 (package (name "rust-widestring") @@ -60752,6 +62664,60 @@ formatters with per-field documentation generated for each structure. "This package provides Rust bindings to OpenBSD's pledge(2) interface.") (license license:expat))) +(define-public rust-ptr-meta-derive-0.1 + (package + (name "rust-ptr-meta-derive") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "ptr_meta_derive" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1b69cav9wn67cixshizii0q5mlbl0lihx706vcrzm259zkdlbf0n")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)))) + (home-page "https://github.com/djkoloski/ptr_meta") + (synopsis "Macros for the ptr_meta fat pointer metadata API") + (description "This package provides macros for the ptr_meta API.") + (license license:expat))) + +(define-public rust-ptr-meta-0.1 + (package + (name "rust-ptr-meta") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "ptr_meta" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1wd4wy0wxrcays4f1gy8gwcmxg7mskmivcv40p0hidh6xbvwqf07")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-ptr-meta-derive" ,rust-ptr-meta-derive-0.1)))) + (home-page "https://github.com/djkoloski/ptr_meta") + (synopsis "Manipulate metadata of fat pointers") + (description "This package allows manipulating the metadata of fat +pointers: + +@itemize +@item Naming the metadata’s type (as an associated type) +@item Extracting metadata from a pointer +@item Reconstructing a pointer from a data pointer and metadata +@item Representing vtables, the metadata for trait objects, as a type with + some limited API. +@end itemize +") + (license license:expat))) + (define-public rust-ptree-0.3 (package (name "rust-ptree") diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm index 0f413b8b74..1a26d7ab37 100644 --- a/gnu/packages/crypto.scm +++ b/gnu/packages/crypto.scm @@ -1538,3 +1538,86 @@ via FUSE without root permissions. It is similar to EncFS, but provides additional security and privacy measures such as hiding file sizes and directory structure. However CryFS is not considered stable yet by the developers.") (license license:lgpl3+))) + +(define-public rust-blake3-0.3 + (package + (name "rust-blake3") + ;; Version 1 requires Rust >= 1.51. + ;; <https://github.com/BLAKE3-team/BLAKE3/releases/tag/1.0.0> + (version "0.3.8") + (source + (origin + (method url-fetch) + (uri (crate-uri "blake3" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1cr5l5szgxm632px41kavl6cgils8h6yhdfkm6jsc5jgiivqai5n")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-arrayref" ,rust-arrayref-0.3) + ("rust-arrayvec" ,rust-arrayvec-0.5) + ("rust-cc" ,rust-cc-1) + ("rust-cfg-if" ,rust-cfg-if-0.1) + ("rust-constant-time-eq" ,rust-constant-time-eq-0.1) + ("rust-crypto-mac" ,rust-crypto-mac-0.8) + ("rust-digest" ,rust-digest-0.9) + ("rust-rayon" ,rust-rayon-1)))) + (home-page "https://github.com/BLAKE3-team/BLAKE3") + (synopsis "BLAKE3 hash function Rust implementation") + (description "This crate provides the official Rust implementation of the +BLAKE3 cryptographic hash function. BLAKE3 is faster than MD5, SHA-1, SHA-2, +SHA-3, and BLAKE2.") + ;; Users may choose between these two licenses when redistributing the + ;; program provided by this package. + (license (list license:cc0 license:asl2.0)))) + +(define-public b3sum + (package + (name "b3sum") + ;; Version 1 requires Rust >= 1.51. + ;; <https://github.com/BLAKE3-team/BLAKE3/releases/tag/1.0.0> + (version "0.3.8") + (source + (origin + (method url-fetch) + (uri (crate-uri "b3sum" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0h3fz16q5lk6mg7r8kjkjrq5hd4injngn5m7pswjbf2pyzjmg4b4")))) + (build-system cargo-build-system) + (arguments + `(;; Install the source so that Cargo.toml is installed, because that is + ;; the only reference to the license information. + #:install-source? #t + #:phases + (modify-phases %standard-phases + (add-before 'check 'patch-tests + (lambda _ + (substitute* "tests/cli_tests.rs" + (("/bin/sh") (which "sh"))))) + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/" ,name "-" + ,(package-version this-package)))) + (install-file "README.md" doc))))) + #:cargo-inputs + (("rust-anyhow" ,rust-anyhow-1) + ("rust-blake3" ,rust-blake3-0.3) + ("rust-clap" ,rust-clap-2) + ("rust-hex" ,rust-hex-0.4) + ("rust-memmap" ,rust-memmap-0.7) + ("rust-rayon" ,rust-rayon-1) + ("rust-wild" ,rust-wild-2)) + #:cargo-development-inputs + (("rust-duct" ,rust-duct-0.13) + ("rust-tempfile" ,rust-tempfile-3)))) + (home-page "https://github.com/BLAKE3-team/BLAKE3") + (synopsis "Command line BLAKE3 checksum tool") + (description "This package provides @code{b3sum}, a command line +checksum tool based on the BLAKE3 cryptographic hash function.") + ;; Users may choose between these two licenses when redistributing the + ;; program provided by this package. + (license (list license:cc0 license:asl2.0)))) diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm index bf92905f9c..46d3820099 100644 --- a/gnu/packages/cups.scm +++ b/gnu/packages/cups.scm @@ -934,9 +934,6 @@ language.") (home-page "http://download.ebz.epson.net/dsc/search/01/search/?OSC=LX") (license license:gpl2+))) -(define-public escpr - (deprecated-package "escpr" epson-inkjet-printer-escpr)) - (define-public splix ;; Last released in 2009 <https://sourceforge.net/projects/splix/files/>. ;; Last SVN commit was 2013 <https://svn.code.sf.net/p/splix/code/splix/>. diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index b7ab4578f2..e11efaf152 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -3049,13 +3049,13 @@ Database API 2.0T.") (define-public python-sqlalchemy (package (name "python-sqlalchemy") - (version "1.4.26") + (version "1.4.27") (source (origin (method url-fetch) (uri (pypi-uri "SQLAlchemy" version)) (sha256 - (base32 "06imr96jirwmkc8mkxrl9bi413yd3638lc5idn65xx8fv7bzkivb")))) + (base32 "031jbd0svrvwr3n52iibp9mkwsj9wicnck45yd26da5kmsfkas6p")))) (build-system python-build-system) (native-inputs `(("python-cython" ,python-cython) ; for C extensions @@ -3164,9 +3164,6 @@ You might also want to install the following optional dependencies: ") (license license:bsd-3))) -(define-public python2-sqlalchemy-utils - (package-with-python2 python-sqlalchemy-utils)) - (define-public python-alchemy-mock (package (name "python-alchemy-mock") @@ -3401,13 +3398,13 @@ designed to be easy and intuitive to use.") (define-public python-psycopg2 (package (name "python-psycopg2") - (version "2.8.6") + (version "2.9.2") (source (origin (method url-fetch) (uri (pypi-uri "psycopg2" version)) (sha256 - (base32 "0hzmk6b1hb5riqkljr5xics6p4zbvmis6knbczb7zhq7273zc8zv")))) + (base32 "1smvvs1ngqy0ymlp1d7f85j09j9v0z5dq14f1qky0j0qi7xajkd8")))) (build-system python-build-system) (arguments ;; Tests would require a postgresql database "psycopg2_test" @@ -3422,9 +3419,6 @@ designed to be easy and intuitive to use.") 2.0.") (license license:lgpl3+))) -(define-public python2-psycopg2 - (package-with-python2 python-psycopg2)) - (define-public python-sadisplay (package (name "python-sadisplay") diff --git a/gnu/packages/debian.scm b/gnu/packages/debian.scm index 42b0fc8c7b..be2f8cc62b 100644 --- a/gnu/packages/debian.scm +++ b/gnu/packages/debian.scm @@ -190,7 +190,7 @@ contains the archive keys used for that.") (define-public debootstrap (package (name "debootstrap") - (version "1.0.124") + (version "1.0.126") (source (origin (method git-fetch) @@ -199,7 +199,7 @@ contains the archive keys used for that.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0pbvrp7gb87pwmjika5hy97342mdfvm0gmy23ag8xz1nnpmn160j")))) + (base32 "0hfx6k86kby4xf0xqskpllq00g159j4khh66hfi6dhcdb91dgyd7")))) (build-system gnu-build-system) (arguments `(#:phases @@ -271,7 +271,7 @@ unpacking them into a directory which can eventually be chrooted into.") (define-public debianutils (package (name "debianutils") - (version "4.11.1") + (version "5.5-1") (source (origin (method git-fetch) (uri (git-reference @@ -280,15 +280,8 @@ unpacking them into a directory which can eventually be chrooted into.") (file-name (git-file-name "debianutils" version)) (sha256 (base32 - "18ypb7fivch53wwrdf73yhf1fhkwn9kvw1kfdc1m450241d6191w")))) + "1sbdjcb44g2s1zxjf9kxrp9drf9mmh6b49a9z3k428gmc6zsci4r")))) (build-system gnu-build-system) - (arguments - '(#:phases (modify-phases %standard-phases - (add-after 'bootstrap 'create-translations - (lambda _ - (with-directory-excursion "po4a" - (invoke "po4a" "--no-backups" "po4a.conf")) - #t))))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm index 26ae8edcd1..07b3d1444b 100644 --- a/gnu/packages/diffoscope.scm +++ b/gnu/packages/diffoscope.scm @@ -73,7 +73,7 @@ (define-public diffoscope (package (name "diffoscope") - (version "190") + (version "192") (source (origin (method git-fetch) @@ -82,7 +82,7 @@ (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "10q93qybwqf2nzj3iakw1pxhccq10ixm9fn7xgdr4p88qb0wchb5")) + (base32 "1anj90r7nvdd7vscx27xnh7vivhq16gxg9cffpwb4w7i02ij5w6b")) (patches (search-patches "diffoscope-fix-llvm-test.patch")))) (build-system python-build-system) diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm index 59413ab253..1c1826e981 100644 --- a/gnu/packages/django.scm +++ b/gnu/packages/django.scm @@ -647,10 +647,6 @@ provides certain advantages over the builtin Jinja2 backend in Django, for example, explicit calls to callables from templates and better performance.") (license license:bsd-3))) -;; JSONField is now built-in to Django, obsoleting this package. -(define-public python-django-jsonfield - (deprecated-package "python-django-jsonfield" python-django)) - (define-public python-dj-database-url (package (name "python-dj-database-url") diff --git a/gnu/packages/dunst.scm b/gnu/packages/dunst.scm index 88b80bfd9d..9a9783a1ce 100644 --- a/gnu/packages/dunst.scm +++ b/gnu/packages/dunst.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2021 Alexandru-Sergiu Marton <brown121407@posteo.ro> +;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -38,7 +39,7 @@ (define-public dunst (package (name "dunst") - (version "1.7.0") + (version "1.7.1") (source (origin (method git-fetch) (uri (git-reference @@ -47,7 +48,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "0bc8f8h7qvxfx742jb8ggycw3z0il3pgln7lgkdjap2pxccyyrh5")))) + "0v15fhwzcg7zfn092sry0f4qb6dccz9bb312y9dadg745wf3n9qw")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no check target diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 4e5dfcc1bc..96248a0a29 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -941,7 +941,7 @@ process, passing on the arguments as command line arguments.") (define-public emacs-minions (package (name "emacs-minions") - (version "0.3.6") + (version "0.3.7") (source (origin (method git-fetch) @@ -950,7 +950,7 @@ process, passing on the arguments as command line arguments.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0lg704kwc851spp69745np8hsk0h6rl2hvfpid0j412278ds1qi8")))) + (base32 "1bzxxs8mxaihpjkbxgynhsi39lbbnij28grdc3sk9sq09j9752vw")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-dash" ,emacs-dash))) @@ -1584,6 +1584,27 @@ different tools. It highlights errors and warnings inline in the buffer, and provides an optional IDE-like error list.") (license license:gpl3+)))) ;+GFDLv1.3+ for the manual +(define-public emacs-flymake-flycheck + (package + (name "emacs-flymake-flycheck") + (version "20210404.2128") + (source + (origin + (method url-fetch) + (uri (string-append "https://melpa.org/packages/flymake-flycheck-" + version ".el")) + (sha256 + (base32 "1m59ahd5gjlfwf328labwdlpcxh8ywywkwgfrlsy5jyxfc9ss4nv")))) + (build-system emacs-build-system) + (propagated-inputs `(("emacs-flycheck" ,emacs-flycheck))) + (home-page "https://github.com/purcell/flymake-flycheck") + (synopsis "Use Flycheck checkers as Flymake backends") + (description + "This package provides support for running any Flycheck checker as a +Flymake diagnostic backend. The effect is that Flymake will control when the +checker runs, and Flymake will receive its errors.") + (license license:gpl3+))) + (define-public emacs-flymake-quickdef ;; This particular commit includes bug fixes on top of 1.0.0 release. (let ((version "1.0.0") @@ -1610,25 +1631,26 @@ boilerplate code from defining new Flymake backend functions.") (license license:gpl3+)))) (define-public emacs-flymake-kondor - (package - (name "emacs-flymake-kondor") - (version "0.0.3") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/turbo-cafe/flymake-kondor") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0h8dqk35r10pxx2w4swb3kij4y2vi17j9wfk978x8lf0wd3h3hsy")))) - (build-system emacs-build-system) - (propagated-inputs - `(("emacs-flymake-quickdef" ,emacs-flymake-quickdef))) - (home-page "https://github.com/turbo-cafe/flymake-kondor") - (synopsis "Linter with clj-kondo") - (description "This package adds Clojure syntax checker clj-kondo.") - (license license:gpl3+))) + ;; No tag, version grabbed from source .el file. + (let ((commit "389b513c7287ede7a996a3d0db2e84b00772fef5") + (revision "0")) + (package + (name "emacs-flymake-kondor") + (version (git-version "0.1.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/turbo-cafe/flymake-kondor") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1by6p1j091xk5bfdpbqp7fifjn4rknrbm8r3xjfvpb4xcb19nmig")))) + (build-system emacs-build-system) + (home-page "https://github.com/turbo-cafe/flymake-kondor") + (synopsis "Linter with clj-kondo") + (description "This package adds Clojure syntax checker clj-kondo.") + (license license:gpl3+)))) (define-public emacs-flymake-shellcheck ;; No tag, version grabbed from source .el file. @@ -2918,7 +2940,7 @@ of bibliographic references.") (define-public emacs-corfu (package (name "emacs-corfu") - (version "0.13") + (version "0.14") (source (origin (method git-fetch) @@ -2927,7 +2949,7 @@ of bibliographic references.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0b1mv6pbcawwfsn3f3hqmy6s8p9frp2320jvlk2z4dp6aw5qyx2j")))) + (base32 "0y40vnd227xjzds6zh85gplkiqa387b9y0925g5l01gz7hk2z17r")))) (build-system emacs-build-system) (home-page "https://github.com/minad/corfu") (synopsis "Completion overlay region function") @@ -8343,7 +8365,7 @@ style, or as multiple word prefixes.") (define-public emacs-consult (package (name "emacs-consult") - (version "0.12") + (version "0.13") (source (origin (method git-fetch) @@ -8351,7 +8373,7 @@ style, or as multiple word prefixes.") (url "https://github.com/minad/consult") (commit version))) (sha256 - (base32 "1bzlqn7k5akhyl763q29853yh5s8rmk6y1ncmy3am940wfypxjic")) + (base32 "0ik5j4i4vb9hz629cjwnzhimskpv0fc8wca37z4ak0q1d898ayph")) (file-name (git-file-name name version)))) (build-system emacs-build-system) (propagated-inputs @@ -8389,27 +8411,30 @@ and present results either as single emails or full trees.") (license license:gpl3+))) (define-public emacs-marginalia - (package - (name "emacs-marginalia") - (version "0.9") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/minad/marginalia") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 "19l3fwh6phd17rssxk30v2380bs04x7w6cb3hjy4mx7vkc7w6ymv")))) - (build-system emacs-build-system) - (home-page "https://github.com/minad/marginalia") - (synopsis "Marginalia in the minibuffer completions") - (description - "This package provides Marginalia mode which adds marginalia to the + ;; Upstream did not tag latest release. The commit below matches version + ;; bump. + (let ((commit "2dbad0b166d6dc76862697bb25b95d34c1703acc")) + (package + (name "emacs-marginalia") + (version "0.10") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/minad/marginalia") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0xb0w7fxbmwbq2mdhs7xrf8z6x6qmkq68p1fv08wb4ksvphyvz5h")))) + (build-system emacs-build-system) + (home-page "https://github.com/minad/marginalia") + (synopsis "Marginalia in the minibuffer completions") + (description + "This package provides Marginalia mode which adds marginalia to the minibuffer completions. Marginalia are marks or annotations placed at the margin of the page of a book or in this case helpful colorful annotations placed at the margin of the minibuffer for your completion candidates.") - (license license:gpl3+))) + (license license:gpl3+)))) (define-public emacs-smartparens (package @@ -8765,9 +8790,9 @@ a source code input file.") (define-public emacs-request ;; We prefer a more recent commit that has support for auth-source, - ;; which makes authentication more convenient for users and maintainers. - (let ((commit "d02d1347ffdf138cffd380cbeac62ac8732036ef") - (revision "0")) + ;; and has some bug fixes for Emacs 28. + (let ((commit "3336eaa97de923f74b90dda3e35985e122d40805") + (revision "1")) (package (name "emacs-request") (version (git-version "0.3.2" revision commit)) @@ -8779,7 +8804,7 @@ a source code input file.") (file-name (git-file-name name version)) (sha256 (base32 - "1rkpakzish2d470ca15yq3k0m1j7a2lrkvvddcyvc2rx0sncsdjs")))) + "0jckwy5zhz95d6l3lz8b9b34pppcjjzy97fg1wn8mqzhf3h460ac")))) (build-system emacs-build-system) (arguments `(#:tests? #f)) ; requires network access. @@ -11045,7 +11070,7 @@ ack, ag, helm and pt.") (define-public emacs-helm (package (name "emacs-helm") - (version "3.8.0") + (version "3.8.1") (source (origin (method git-fetch) @@ -11054,7 +11079,7 @@ ack, ag, helm and pt.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1xrpv0sqmlwn94bc31k2iav284i1hl95937541ihlkhqg6v2vwrv")))) + (base32 "1yfr2vz1kd21rvnxi8xzv67gs5r599fhjmw8qphsmpv5afscfl7k")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-async" ,emacs-async) @@ -12339,7 +12364,7 @@ programming and reproducible research.") (synopsis "Unmaintained add-ons for Org mode") (description "This package contains add-ons to Org. Be warned that these libraries -receive little if no maintainance and there is no guaranty that they are +receive little if no maintenance and there is no guaranty that they are compatible with the Org stable version.") (license license:gpl3+))) @@ -12367,6 +12392,27 @@ complete email addresses, export contacts to a vCard file, put birthdays in your Org Agenda, and more.") (license license:gpl3+)))) +(define-public emacs-org-vcard + (package + (name "emacs-org-vcard") + (version "0.2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/flexibeast/org-vcard") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "14l3xqahqmnfl3sskqcr33xpcsic8dm9cr9wmbv5la3xv14n10k7")))) + (build-system emacs-build-system) + (home-page "https://github.com/flexibeast/org-vcard") + (synopsis "Org mode support for vCard export and import") + (description + "This package exports and imports vCard files from within GNU Emacs' Org +mode.") + (license license:gpl3+))) + (define-public emacs-org-pretty-table ;; There is no release yet. (let ((commit "1331c600b83d95b28730b1bfcb48369ac1cf12ef") @@ -13941,14 +13987,14 @@ methods from a given list.") (define-public emacs-posframe (package (name "emacs-posframe") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "posframe-" version ".tar")) (sha256 - (base32 "0ddm149dz71nksbpz7rwa8cax1nisf6wklv5iq4zrcbf5ghpagkg")))) + (base32 "13bx8vd3dw4jvwrys1vyq3a65rjjsbsvi6jxiffp647aclwwfcjs")))) (build-system emacs-build-system) ;; emacs-minimal does not include the function font-info. (arguments @@ -14096,7 +14142,7 @@ It should enable you to implement low-level X11 applications.") (define-public emacs-exwm (package (name "emacs-exwm") - (version "0.25") + (version "0.26") (synopsis "Emacs X window manager") (source (origin @@ -14104,7 +14150,7 @@ It should enable you to implement low-level X11 applications.") (uri (string-append "https://elpa.gnu.org/packages/" "exwm-" version ".tar")) (sha256 - (base32 "0imd4v9ccvpsskmfnycz5fgabsvdjp1msg5v8rc7x0v26r3kr4x7")))) + (base32 "03pg0r8a5vb1wc5grmjgzql74p47fniv47x39gdll5s3cq0haf6q")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-xelb" ,emacs-xelb))) @@ -15071,6 +15117,57 @@ fragment in a dedicated buffer just like editing a source block.") multiplexer.") (license license:gpl3+))) +(define-public emacs-plz + (let ((commit "7e456638a651bab3a814e3ea81742dd917509cbb") + (revision "1")) + (package + (name "emacs-plz") + (version (git-version "0.1-pre" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/alphapapa/plz.el") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05kgxrps1s20im5hhq799nrs3615bvssm4r0ysgmwm203mmzsjgj")))) + (build-system emacs-build-system) + (inputs `(("curl" ,curl))) + (home-page "https://github.com/alphapapa/plz.el") + (synopsis "HTTP library for Emacs") + (description + "This package provides HTTP library for Emacs. It uses curl as +a backend, which avoids some of the issues with using Emacs’s built-in url +library.") + (license license:gpl3+)))) + +(define-public emacs-ement + (let ((commit "c951737dc855604aba389166bb0e7366afadc533") + (revision "1")) + (package + (name "emacs-ement") + (version (git-version "0.1-pre" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/alphapapa/ement.el") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00iwwz4hzg4g59wrb5df6snqz3ppvrsadhfp61w1pa8gvg2z9bvy")))) + (build-system emacs-build-system) + (arguments + `(#:emacs ,emacs)) ;need libxml support + (inputs + `(("emacs-plz" ,emacs-plz) + ("emacs-ts" ,emacs-ts))) + (home-page "https://github.com/alphapapa/ement.el") + (synopsis "Matrix client for Emacs") + (description "Ement.el is a Matrix client for Emacs.") + (license license:gpl3+)))) + (define-public emacs-rpm-spec-mode (package (name "emacs-rpm-spec-mode") @@ -21788,7 +21885,7 @@ source code.") (define-public emacs-rustic (package (name "emacs-rustic") - (version "2.0") + (version "2.1") (source (origin (method git-fetch) @@ -21797,7 +21894,7 @@ source code.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1x06lp0c656zm07n28lnkqp678y4f9zkd9n5m0lramndllrpk3x2")))) + (base32 "0nklqpd24s83ng34xrm4rp80sbylajikj6svz1c6j721pz9crxg9")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-dash" ,emacs-dash) @@ -26652,12 +26749,6 @@ meet the needs of the numerous interfaces that are possible in the Emacs computing environment.") (license license:gpl3+))) -(define-public emacs-modus-operandi-theme - (deprecated-package "emacs-modus-operandi-theme" emacs-modus-themes)) - -(define-public emacs-modus-vivendi-theme - (deprecated-package "emacs-modus-vivendi-theme" emacs-modus-themes)) - (define-public emacs-punpun-theme (let ((commit "2f78125609277b2478abdebd8f9d5ee10a823b65") (revision "0")) @@ -27087,16 +27178,16 @@ contributed packages to Telega."))) (define-public emacs-doom-modeline (package (name "emacs-doom-modeline") - (version "3.2.0") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/seagle0128/doom-modeline") - (commit (string-append "v" version)))) - (sha256 - (base32 - "1gfkaxga919a1a19dhpbby95l8dixb1278g5d7iadjf2i3j0p3l0")) - (file-name (git-file-name name version)))) + (version "3.2.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/seagle0128/doom-modeline") + (commit (string-append "v" version)))) + (sha256 + (base32 "1ji15n2rdp7bjg5iq9im6c4m12k24kqp85i3n1m9npihrb4arh54")) + (file-name (git-file-name name version)))) (build-system emacs-build-system) (arguments `(#:test-command '("ert-runner"))) @@ -29631,7 +29722,7 @@ and preferred services can easily be configured.") (define-public emacs-vertico (package (name "emacs-vertico") - (version "0.14") + (version "0.15") (source (origin (method git-fetch) @@ -29640,7 +29731,7 @@ and preferred services can easily be configured.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0rddk76ih44b574lsr6d6r9wa2l7c9zlb9kcyw5xvly17ciiq16h")))) + (base32 "059mj7x9iisjl2cdc1ggqd3racfs42yf0qqk0va9c857qgscrn26")))) (build-system emacs-build-system) (arguments `(#:phases diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 1cce0149a6..5a0f80f913 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -1030,9 +1030,6 @@ electrical diagrams), gerbview (viewing Gerber files) and others.") translations for KiCad.") (license license:gpl3+))) -(define-public kicad-i18l - (deprecated-package "kicad-i18l" kicad-i18n)) - (define-public kicad-doc (package (name "kicad-doc") diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm index 8c7da4a5b4..7ebf4c35a9 100644 --- a/gnu/packages/enlightenment.scm +++ b/gnu/packages/enlightenment.scm @@ -201,7 +201,7 @@ removable devices or support for multimedia.") (define-public terminology (package (name "terminology") - (version "1.10.0") + (version "1.11.0") (source (origin (method url-fetch) (uri @@ -209,7 +209,7 @@ removable devices or support for multimedia.") "terminology/terminology-" version ".tar.xz")) (sha256 (base32 - "0imk7cjkcjss3zf4hjwmy54pbizm6l6pq553jcx7bpsnhs56bbsz")) + "0bbav27p1xni7kidgf3vn42bwsfrzds301k3f7c8dg7v5yyq9n2g")) (modules '((guix build utils))) ;; Remove the bundled fonts. (snippet @@ -386,9 +386,6 @@ unload unused functionality, with support for touchscreen and suitable for embedded systems.") (license license:bsd-2))) -(define-public enlightenment-wayland - (deprecated-package "enlightenment-wayland" enlightenment)) - (define-public python-efl (package (name "python-efl") diff --git a/gnu/packages/fcitx5.scm b/gnu/packages/fcitx5.scm index 737f47f20f..0c4980aba2 100644 --- a/gnu/packages/fcitx5.scm +++ b/gnu/packages/fcitx5.scm @@ -87,7 +87,7 @@ client.") (define-public fcitx5 (package (name "fcitx5") - (version "5.0.8") + (version "5.0.10") (source (origin (method url-fetch) @@ -95,7 +95,7 @@ client.") "https://download.fcitx-im.org/fcitx5/fcitx5/fcitx5-" version "_dict.tar.xz")) (sha256 - (base32 "0536sjpgjlg0bf8imz4jf9bdsp7fhm09bkssddji56cc9mgdxx82")))) + (base32 "0i23skr49n6b30ybm66bkv07dcr0dan5mzxch7x83znfnrpk8z3h")))) (build-system cmake-build-system) (arguments `(#:configure-flags @@ -198,7 +198,7 @@ editors.") (define-public fcitx5-gtk (package (name "fcitx5-gtk") - (version "5.0.7") + (version "5.0.9") (source (origin (method url-fetch) @@ -206,7 +206,7 @@ editors.") "/fcitx5-gtk/fcitx5-gtk-" version ".tar.xz")) (sha256 - (base32 "0x9xwyb3hnb2xl47jkj8zs34fhyf7gshy3bv3jxd66sfkjrscr5v")))) + (base32 "07ip4sxf3q895pp7mivv2bdwcmqjnwrmv9pg99jk73cw9bgyq00n")))) (build-system cmake-build-system) (arguments `(#:tests? #f ;No test @@ -252,7 +252,7 @@ for GTK+2/GTK+3 application.") (define-public fcitx5-qt (package (name "fcitx5-qt") - (version "5.0.6") + (version "5.0.7") (source (origin (method url-fetch) @@ -260,7 +260,7 @@ for GTK+2/GTK+3 application.") "/fcitx5-qt/fcitx5-qt-" version ".tar.xz")) (sha256 - (base32 "0wp88cmy0gn15gkfzl5z4q4qd9j1ssdmgp1rfsbw0cp3qh5x4m69")))) + (base32 "1gspj3s1nz6mqbp3z6js5zf7mqicwm32isxlqh6whhwawr9w7vrk")))) (build-system cmake-build-system) (arguments `(#:configure-flags @@ -348,7 +348,7 @@ including input methods previous bundled inside Fcitx 4: (define-public fcitx5-configtool (package (name "fcitx5-configtool") - (version "5.0.5") + (version "5.0.8") (source (origin (method url-fetch) @@ -356,7 +356,7 @@ including input methods previous bundled inside Fcitx 4: "https://download.fcitx-im.org/fcitx5" "/fcitx5-configtool/fcitx5-configtool-" version ".tar.xz")) (sha256 - (base32 "1diwiniqvsvcdwzcx1dqxbvwsr6ajbxs67my0cpn8n22asd5mx8i")))) + (base32 "0rajrw914mbl0x7h08cal0sszwyvqg6v3w0vs0c9acs6m438xbw4")))) (build-system cmake-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 354a2f2e0f..b6c6527aa0 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -99,6 +99,7 @@ #:use-module (gnu packages python) #:use-module (gnu packages python-build) #:use-module (gnu packages python-crypto) + #:use-module (gnu packages python-science) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages qt) @@ -194,7 +195,7 @@ line client and a client based on Qt.") (define-public bitcoin-core-0.20 (package (inherit bitcoin-core-0.21) - (version "0.20.1") + (version "0.20.2") (source (origin (method url-fetch) (uri @@ -202,7 +203,7 @@ line client and a client based on Qt.") version "/bitcoin-" version ".tar.gz")) (sha256 (base32 - "0y5rad68b398arh0abr2wgiwybdw0i5a4dxz9s3fk9fgdbyn5gab")))))) + "14smp5vmh7baabl856wlg7w7y5910jhx6c02mlkm4hkywf3yylky")))))) ;; The support lifetimes for bitcoin-core versions can be found in ;; <https://bitcoincore.org/en/lifecycle/#schedule>. @@ -1257,7 +1258,7 @@ Its features are: (define-public grisbi (package (name "grisbi") - (version "1.2.2") + (version "2.0.5") (source (origin (method url-fetch) @@ -1267,7 +1268,7 @@ Its features are: "/grisbi-" version ".tar.bz2")) (sha256 (base32 - "1piiyyxjsjbw9gcqydvknzxmmfgh8kdqal12ywrxyxih2afwnvbw")))) + "0gvsqw1z5wkakyi3bkq71pqb094a8lv2nbgnxw2zqkabzjmxnfmx")))) (build-system glib-or-gtk-build-system) (arguments `(#:configure-flags (list "--without-ofx"))) @@ -1773,6 +1774,32 @@ local, single-user UI, or as a multi-user UI for viewing, adding, and editing on the Web.") (license license:gpl3))) +(define-public python-ta-lib + (package + (name "python-ta-lib") + (version "0.4.21") + (source + (origin + (method url-fetch) + (uri (pypi-uri "TA-Lib" version)) + (sha256 + (base32 "17sf222mq2vx924f15qlz5czkkq5vsnsjy9ibwkrk8lalr6g5lkl")))) + (build-system python-build-system) + (inputs + `(("ta-lib" ,ta-lib))) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + `(("python-cython" ,python-cython) + ("python-nose" ,python-nose) + ("python-pandas" ,python-pandas))) + (home-page "https://github.com/mrjbq7/ta-lib") + (synopsis "Python wrapper for TA-Lib") + (description + "This is a Python wrapper for TA-Lib based on Cython. TA-Lib is a library +providing common functions for the technical analysis of financial market data.") + (license license:bsd-2))) + (define-public ta-lib (package (name "ta-lib") diff --git a/gnu/packages/firmware.scm b/gnu/packages/firmware.scm index e9083bc1c4..aefc0a8b69 100644 --- a/gnu/packages/firmware.scm +++ b/gnu/packages/firmware.scm @@ -245,17 +245,9 @@ for platform-specific firmwares executing in M-mode.") (define-public opensbi-qemu-generic (make-opensbi-package "generic" "opensbi-qemu-generic")) -(define-public opensbi-qemu-virt - (deprecated-package "opensbi-qemu-virt" opensbi-qemu-generic)) - (define-public opensbi-sifive-fu540 (make-opensbi-package "sifive/fu540" "opensbi-sifive-fu540")) -(define-public opensbi-qemu-sifive-u - ;; Dropped upstream, as all functionality is present in the sifive-fu540 - ;; target for recent versions of qemu, u-boot and linux. - (deprecated-package "opensbi-qemu-sifive-u" opensbi-sifive-fu540)) - (define-public seabios (package (name "seabios") diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm index 793b86ced8..3f36a71bdd 100644 --- a/gnu/packages/fonts.scm +++ b/gnu/packages/fonts.scm @@ -331,9 +331,6 @@ The Lato 2.010 family supports more than 100 Latin-based languages, over (properties '((upstream-name . "freefont") (ftp-directory . "/gnu/freefont"))))) -(define-public font-gnu-freefont-ttf - (deprecated-package "font-gnu-freefont-ttf" font-gnu-freefont)) - (define-public font-liberation (package (name "font-liberation") @@ -1593,9 +1590,6 @@ swapping. The italic style for OpenDyslexic has been crafted to be used for emphasis while still being readable.") (license license:silofl1.1))) -(define-public font-open-dyslexic - (deprecated-package "font-open-dyslexic" font-opendyslexic)) - (define-public font-openmoji (package (name "font-openmoji") diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm index b74573ec11..9410921766 100644 --- a/gnu/packages/game-development.scm +++ b/gnu/packages/game-development.scm @@ -375,9 +375,6 @@ you can focus on the game itself. This makes more rapid game development possible, and it also makes the SGE easy to learn.") (license license:lgpl3+))) -(define-public python-sge-pygame - (deprecated-package "python-sge-pygame" python-sge)) - (define-public python-tmx (package (name "python-tmx") @@ -2071,9 +2068,6 @@ that parenthetically inclined game developers need to make 2D (and eventually @end enumerate\n") (license license:gpl3+))) -(define-public guile3.0-chickadee - (deprecated-package "guile3.0-chickadee" guile-chickadee)) - (define-public bennu-game-development (package (name "bennu-game-development") diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 08a216e9ef..e01ad3c8d2 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -2255,7 +2255,7 @@ Every puzzle has a complete solution, although there may be more than one.") (native-inputs `(("unzip" ,unzip))) (inputs - `(("python-sge-pygame" ,python-sge-pygame) + `(("python-sge" ,python-sge) ("python-six" ,python-six) ("python-xsge" ,python-xsge))) (home-page "https://retux-game.github.io/") @@ -4621,10 +4621,10 @@ Transport Tycoon Deluxe.") ("freetype" ,freetype) ("icu4c" ,icu4c) ("jansson" ,jansson) + ("json-modern-cxx" ,json-modern-cxx) ("libpng" ,libpng) ("libzip" ,libzip) ("mesa" ,mesa) - ("nlohmann-json-cpp" ,nlohmann-json-cpp) ("openrct2-objects" ,openrct2-objects) ("openrct2-title-sequences" ,openrct2-title-sequences) ("openssl" ,openssl) @@ -12064,10 +12064,10 @@ etc. You can also play games on FICS or against an engine.") (license license:gpl2+))) (define-public stockfish - (let ((neural-network-revision "3475407dc199")) ; also update hash below + (let ((neural-network-revision "13406b1dcbe0")) ; also update hash below (package (name "stockfish") - (version "14") + (version "14.1") (source (origin (method git-fetch) @@ -12076,7 +12076,7 @@ etc. You can also play games on FICS or against an engine.") (commit (string-append "sf_" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "046b3rq9w8lzgk07q5zazzkl93ai99ab18hr9d8n73mabjpi6zbx")))) + (base32 "0apqqcgpcflm3c6mcl13ln2y04f6zksnljmk4ys7naf7xk4vdgkd")))) (build-system gnu-build-system) (inputs `(("neural-network" @@ -12086,7 +12086,7 @@ etc. You can also play games on FICS or against an engine.") neural-network-revision ".nnue")) (sha256 (base32 - "11zci5kgwdw9rh8w2w4p84764g82rr666y3n8r2flwwrq5yl0x9l")))))) + "0vr3hcmlqqm74pn7hc54gmfs9drqvgc53nh7bvy6v8z0rcfnnh0k")))))) (arguments `(#:tests? #f #:make-flags (list "-C" "src" @@ -12631,7 +12631,7 @@ get attention, so you get found.") "1yy5r1r0hv0xggk8qd8bwk2zy7abpv89nikq4flqgi53fc5q9xl7")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; no tests provided + `(#:tests? #f ; no tests provided #:phases (modify-phases %standard-phases (delete 'configure) @@ -12655,6 +12655,8 @@ get attention, so you get found.") (chdir "..") (install-file "prince" bin) (substitute* template (("\\$ROOT") out)) + (substitute* "src/seg009.c" + (("g_argv[0]") (string-append "\"" out "\""))) (install-file template app) (rename-file (string-append app "/SDLPoP.desktop.template") (string-append app "/SDLPoP.desktop")) diff --git a/gnu/packages/genimage.scm b/gnu/packages/genimage.scm index fb994231dd..f5574b04ee 100644 --- a/gnu/packages/genimage.scm +++ b/gnu/packages/genimage.scm @@ -43,7 +43,7 @@ (define-public genimage (package (name "genimage") - (version "11") + (version "14") (source (origin (method git-fetch) (uri (git-reference @@ -52,9 +52,9 @@ (file-name (git-file-name name version)) (sha256 (base32 - "15jmh17lvm3jw9c92bjarly7iwhmnfl322d91mprfv10ppb9ip54")) - ;; will be shipped with release 14 - (patches (search-patches "genimage-signedness.patch")))) + "1l45djpbaffhyw0allq3mgzwrdilk05iyj0nvp8l3s47vnp5bnbs")) + (patches + (search-patches "genimage-mke2fs-test.patch")))) (build-system gnu-build-system) (arguments `(#:modules diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 1fa53deca5..bd105f7985 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -92,6 +92,7 @@ #:use-module (gnu packages protobuf) #:use-module (gnu packages pulseaudio) #:use-module (gnu packages python) + #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-science) @@ -1458,6 +1459,42 @@ persisted. ") (license license:expat))) +(define-public python-rtree + (package + (name "python-rtree") + (version "0.9.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Rtree" version)) + (sha256 + (base32 "0gna530vy6rh76035cqh7i2lx199cvxjrzjczg9rm6k96k5751xy")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-libspatialindex + (lambda* (#:key inputs #:allow-other-keys) + (setenv "SPATIALINDEX_C_LIBRARY" + (string-append (assoc-ref inputs "libspatialindex") + "/lib/libspatialindex.so")))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + `(("python-numpy" ,python-numpy) + ("python-pytest" ,python-pytest) + ("python-wheel" ,python-wheel))) + (inputs + `(("libspatialindex" ,libspatialindex))) + (home-page "https://github.com/Toblerity/rtree") + (synopsis "R-Tree spatial index for Python GIS") + (description + "RTree is a Python package with bindings for @code{libspatialindex}.") + (license license:expat))) + (define-public java-jmapviewer (package (name "java-jmapviewer") diff --git a/gnu/packages/gnome-xyz.scm b/gnu/packages/gnome-xyz.scm index 60c93d86e6..6ba9656cdd 100644 --- a/gnu/packages/gnome-xyz.scm +++ b/gnu/packages/gnome-xyz.scm @@ -775,9 +775,6 @@ dark elements. It supports GNOME, Unity, Xfce, and Openbox.") (home-page "https://numixproject.github.io") (license license:gpl3+))) -(define-public numix-theme - (deprecated-package "numix-theme" numix-gtk-theme)) - (define-public orchis-theme (package (name "orchis-theme") diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm index fe260fa345..5bd1c0450e 100644 --- a/gnu/packages/gnupg.scm +++ b/gnu/packages/gnupg.scm @@ -510,9 +510,6 @@ interface (FFI) of Guile.") `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-gcrypt)))))) -(define-public guile3.0-gcrypt - (deprecated-package "guile3.0-gcrypt" guile-gcrypt)) - (define-public python-gpg (package (name "python-gpg") @@ -810,14 +807,14 @@ including tools for signing keys, keyring analysis, and party preparation. (define-public pinentry-tty (package (name "pinentry-tty") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (string-append "mirror://gnupg/pinentry/pinentry-" version ".tar.bz2")) (sha256 (base32 - "0zx5vg6wws2sp2yxwi01b8i1pnsqkydncpj7x0p8xl9y05ja04nd")))) + "0w34c4x5hkxaxnnkcrm1azlzwzxcziv5dkci3xcd0hz0ld2j01qh")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--enable-pinentry-tty"))) diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm index 7371f1cd9f..f5eea460b5 100644 --- a/gnu/packages/gstreamer.scm +++ b/gnu/packages/gstreamer.scm @@ -1069,13 +1069,6 @@ given, also pass them to the build system instead of the ones used by PKG." (("'auto'") "'disabled'")) #t))))))))) -(define-public gst-transcoder - (deprecated-package - "gst-transcoder" - (gst-plugins/selection gst-plugins-bad - #:plugins '("transcoder") - #:configure-flags '("-Dintrospection=enabled")))) - (define-public python-gst (package (name "python-gst") diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm index 199ca13981..859e910e49 100644 --- a/gnu/packages/gtk.scm +++ b/gnu/packages/gtk.scm @@ -1351,9 +1351,6 @@ exceptions, macros, and a dynamic programming environment.") ,@(fold alist-delete (package-inputs guile-cairo) '("guile" "guile-lib")))))) -(define-public guile3.0-cairo - (deprecated-package "guile3.0-cairo" guile-cairo)) - (define-public guile-rsvg ;; Use a recent snapshot that supports Guile 2.2 and beyond. (let ((commit "05c6a2fd67e4fea1a7c3ff776729dc931bae6678") @@ -1438,9 +1435,6 @@ images onto Cairo surfaces.") '("guile" "guile-lib")))) (propagated-inputs `(("guile-cairo" ,guile2.2-cairo))))) -(define-public guile3.0-rsvg - (deprecated-package "guile3.0-rsvg" guile-rsvg)) - (define-public guile-present (package (name "guile-present") @@ -1511,9 +1505,6 @@ documents.") ("guile-cairo" ,guile2.2-cairo) ("guile-rsvg" ,guile2.2-rsvg))))) -(define-public guile3.0-present - (deprecated-package "guile3.0-present" guile-present)) - (define-public guile-gnome (package (name "guile-gnome") diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index 1ef872ffe1..a3b1182101 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -706,9 +706,6 @@ is not available for Guile 2.0.") (name "guile2.2-fibers") (inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-fibers - (deprecated-package "guile3.0-fibers" guile-fibers)) - (define-public guile-filesystem (package (name "guile-filesystem") @@ -811,9 +808,6 @@ HTML (via SXML) or any other format for rendering.") (name "guile2.2-syntax-highlight") (inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-syntax-highlight - (deprecated-package "guile3.0-syntax-highlight" guile-syntax-highlight)) - (define-public guile-sjson (package (name "guile-sjson") @@ -899,9 +893,6 @@ using Guile's foreign function interface.") ,@(alist-delete "guile" (package-native-inputs guile-squee)))))) -(define-public guile3.0-squee - (deprecated-package "guile3.0-squee" guile-squee)) - (define-public guile-colorized (package (name "guile-colorized") @@ -930,9 +921,6 @@ using Guile's foreign function interface.") (name "guile2.2-colorized") (native-inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-colorized - (deprecated-package "guile3.0-colorized" guile-colorized)) - (define-public guile-pfds (package (name "guile-pfds") @@ -1094,9 +1082,6 @@ types are supported.") (find-files "." "\\.sls$")) #t)))))))) -(define-public guile3.0-pfds - (deprecated-package "guile3.0-pfds" guile-pfds)) - (define-public guile-aa-tree (package (name "guile-aa-tree") @@ -1162,9 +1147,6 @@ messaging library.") (name "guile2.2-simple-zmq") (native-inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-simple-zmq - (deprecated-package "guile3.0-simple-zmq" guile-simple-zmq)) - (define-public jupyter-guile-kernel (let ((commit "f25fb90b95529b17a006a807bd04e6aee12ea304") (revision "2")) @@ -1361,9 +1343,6 @@ format.") (inputs `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-email)))))) -(define-public guile3.0-email - (deprecated-package "guile3.0-email" guile-email)) - (define-public guile-newt (package (name "guile-newt") @@ -1403,9 +1382,6 @@ Scheme by using Guile’s foreign function interface.") (inputs `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-newt)))))) -(define-public guile3.0-newt - (deprecated-package "guile3.0-newt" guile-newt)) - (define-public guile-mastodon (let ((commit "74b75bcf547df92acee1e0466ecd7ec07f775392") (revision "1")) @@ -1483,9 +1459,6 @@ written in pure Scheme by using Guile's foreign function interface.") (propagated-inputs `(("guile-bytestructures" ,guile2.2-bytestructures))))) -(define-public guile3.0-parted - (deprecated-package "guile3.0-parted" guile-parted)) - (define-public guile-xosd (package (name "guile-xosd") @@ -1706,9 +1679,6 @@ above command-line parameters.") (inputs `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-config)))))) -(define-public guile3.0-config - (deprecated-package "guile3.0-config" guile-config)) - (define-public guile-hall (package (name "guile-hall") @@ -1798,9 +1768,6 @@ provides tight coupling to Guix.") ,@(alist-delete "guile-config" (package-propagated-inputs guile-hall)))))) -(define-public guile3.0-hall - (deprecated-package "guile3.0-hall" guile-hall)) - (define-public guile-ics (package (name "guile-ics") @@ -1852,9 +1819,6 @@ The library is shipped with documentation in Info format and usage examples.") ,@(alist-delete "guile" (package-inputs guile-ics)))) (propagated-inputs `(("guile-lib" ,guile2.2-lib))))) -(define-public guile3.0-ics - (deprecated-package "guile3.0-ics" guile-ics)) - (define-public guile-imanifest (let ((commit "ccd5a2111b008d778106f5595a3a585954d95d0") (revision "0")) @@ -1972,9 +1936,6 @@ users and in some situations.") (name "guile2.2-wisp") (inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-wisp - (deprecated-package "guile3.0-wisp" guile-wisp)) - (define-public guile-udev (package (name "guile-udev") @@ -2338,9 +2299,6 @@ library.") (inputs `(("ncurses" ,ncurses) ("guile" ,guile-2.2))))) -(define-public guile3.0-ncurses - (deprecated-package "guile3.0-ncurses" guile-ncurses)) - (define-public guile-ncurses/gpm (package (inherit guile-ncurses) @@ -2348,13 +2306,6 @@ library.") (inputs `(("ncurses" ,ncurses/gpm) ("guile" ,guile-3.0))))) -(define-public guile3.0-ncurses/gpm - (package - (inherit guile3.0-ncurses) - (name "guile3.0-ncurses-with-gpm") - (inputs `(("ncurses" ,ncurses/gpm) - ("guile" ,guile-3.0))))) - (define-public guile-lib (package (name "guile-lib") @@ -2450,9 +2401,6 @@ for Guile\". It provides the following modules: (alist-replace "guile" (list guile-2.2) (package-inputs guile-lib))))) -(define-public guile3.0-lib - (deprecated-package "guile3.0-lib" guile-lib)) - (define-public guile-minikanren (package (name "guile-minikanren") @@ -2495,9 +2443,6 @@ See http://minikanren.org/ for more on miniKanren generally.") (name "guile2.2-minikanren") (native-inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-minikanren - (deprecated-package "guile3.0-minikanren" guile-minikanren)) - (define-public guile-irregex (package (name "guile-irregex") @@ -2550,9 +2495,6 @@ inspired by the SCSH regular expression system.") (name "guile2.2-irregex") (native-inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-irregex - (deprecated-package "guile3.0-irregex" guile-irregex)) - (define-public haunt (package (name "haunt") @@ -2637,9 +2579,6 @@ interface for reading articles in any format.") (name "guile2.0-haunt") (inputs `(("guile" ,guile-2.0))))) -(define-public guile3.0-haunt - (deprecated-package "guile3.0-haunt" haunt)) - (define-public guile-redis (package (name "guile-redis") @@ -2755,9 +2694,6 @@ is no support for parsing block and inline level HTML.") (name "guile2.0-commonmark") (inputs `(("guile" ,guile-2.0))))) -(define-public guile3.0-commonmark - (deprecated-package "guile3.0-commonmark" guile-commonmark)) - (define-public mcron (package (name "mcron") @@ -2808,9 +2744,6 @@ format is also supported.") (name "guile2.2-mcron") (inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-mcron - (deprecated-package "guile3.0-mcron" mcron)) - (define-public guile-picture-language (let ((commit "a1322bf11945465241ca5b742a70893f24156d12") (revision "5")) @@ -2856,10 +2789,6 @@ The picture values can directly be displayed in Geiser.") `(("guile-cairo" ,guile2.2-cairo) ("guile-rsvg" ,guile2.2-rsvg))))) -(define-public guile3.0-picture-language - (deprecated-package "guile3.0-picture-language" - guile-picture-language)) - (define-public guile-studio (let ((commit "dd0ad42e51feafebda7cc29afe7c8bc7a182a842") (revision "1")) @@ -3211,9 +3140,6 @@ pre-alpha code.") `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-gi)))))) -(define-public guile3.0-gi - (deprecated-package "guile3.0-gi" guile-gi)) - (define-public guile-srfi-89 (package (name "guile-srfi-89") @@ -3797,9 +3723,6 @@ comparing, and writing Semantic Versions. It also includes ranges in the style of the Node Package Manager (NPM).") (license license:gpl3+))) -(define-public guile3.0-semver - (deprecated-package "guile3.0-semver" guile-semver)) - (define-public guile2.2-semver (package (inherit guile-semver) @@ -3865,9 +3788,6 @@ SHA-512).") (native-inputs `(("guile" ,guile-2.2))))) -(define-public guile3.0-hashing - (deprecated-package "guile3.0-hashing" guile-hashing)) - (define-public guile-packrat (package (name "guile-packrat") @@ -4117,9 +4037,6 @@ models and also supports a rich set of boolean query operators.") `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-xapian)))))) -(define-public guile3.0-xapian - (deprecated-package "guile3.0-xapian" guile-xapian)) - (define-public guile-torrent (package (name "guile-torrent") @@ -4214,9 +4131,6 @@ WebSocket protocol as defined by RFC 6455.") (home-page "https://git.dthompson.us/guile-websocket.git") (license license:lgpl3+)))) -(define-public guile3.0-websocket - (deprecated-package "guile3.0-websocket" guile-websocket)) - (define-public guile-rdf (package (name "guile-rdf") @@ -4861,7 +4775,7 @@ locations.") (define-public guile-netlink (package (name "guile-netlink") - (version "1.0.1") + (version "1.1") (source (origin (method git-fetch) @@ -4871,7 +4785,7 @@ locations.") (file-name (git-file-name name version)) (sha256 (base32 - "03zmsha2d7whlwb52gna83jdas9bqi18rq3sss7kkicv814qb35g")))) + "1x1rx6agjdah56r50cfs41vyvycydyjdq0plq3jxgvl1q2dar1gw")))) (build-system gnu-build-system) (arguments `(#:tests? #f)); no tests diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm index df75389760..941b718364 100644 --- a/gnu/packages/guile.scm +++ b/gnu/packages/guile.scm @@ -530,39 +530,6 @@ GNU@tie{}Guile. Use the @code{(ice-9 readline)} module and call its (guile-variant-package-name "guile2.2") #:deep? #f)) -(define-syntax define-deprecated-guile3.0-package - (lambda (s) - "Define a deprecated package alias for \"guile3.0-something\"." - (syntax-case s () - ((_ name) - (and (identifier? #'name) - (string-prefix? "guile3.0-" (symbol->string (syntax->datum - #'name)))) - (let ((->guile (lambda (str) - (let ((base (string-drop str - (string-length "guile3.0-")))) - (string-append "guile-" base))))) - (with-syntax ((package-name (symbol->string (syntax->datum #'name))) - (package - (datum->syntax - #'name - (string->symbol - (->guile (symbol->string (syntax->datum - #'name)))))) - (old-name - ;; XXX: This is the name generated by - ;; 'define-deprecated'. - (datum->syntax - #'name - (symbol-append '% (syntax->datum #'name) - '/deprecated)))) - #'(begin - (define-deprecated name package - (deprecated-package package-name package)) - (export old-name)))))))) - -(define-deprecated-guile3.0-package guile3.0-readline) - (define-public guile-for-guile-emacs (let ((commit "15ca78482ac0dd2e3eb36dcb31765d8652d7106d") (revision "1")) @@ -671,9 +638,6 @@ specification. These are the main features: (native-inputs (list pkg-config guile-3.0)) (inputs (list guile-3.0)))) -(define-public guile3.0-json - (deprecated-package "guile3.0-json" guile-json-3)) - (define-public guile-json-4 (package (inherit guile-json-3) @@ -743,8 +707,6 @@ Guile's foreign function interface.") (define-public guile2.2-gdbm-ffi (package-for-guile-2.2 guile-gdbm-ffi)) -(define-deprecated-guile3.0-package guile3.0-gdbm-ffi) - (define-public guile-sqlite3 (package (name "guile-sqlite3") @@ -773,8 +735,6 @@ Guile's foreign function interface.") (define-public guile2.2-sqlite3 (package-for-guile-2.2 guile-sqlite3)) -(define-deprecated-guile3.0-package guile3.0-sqlite3) - (define-public guile-bytestructures (package (name "guile-bytestructures") @@ -819,8 +779,6 @@ type system, elevating types to first-class status.") (define-public guile2.2-bytestructures (package-for-guile-2.2 guile-bytestructures)) -(define-deprecated-guile3.0-package guile3.0-bytestructures) - (define-public guile-git (package (name "guile-git") @@ -856,8 +814,6 @@ manipulate repositories of the Git version control system.") (define-public guile2.0-git (package-for-guile-2.0 guile-git)) -(define-deprecated-guile3.0-package guile3.0-git) - (define-public guile-zlib (package (name "guile-zlib") diff --git a/gnu/packages/haskell-apps.scm b/gnu/packages/haskell-apps.scm index faa3b52c5c..fe7dd853b2 100644 --- a/gnu/packages/haskell-apps.scm +++ b/gnu/packages/haskell-apps.scm @@ -982,6 +982,3 @@ Replace some ASCII sequences by their Unicode equivalent (turned off by default) @end itemize") (license license:bsd-3))) - -(define-public ghc-stylish-haskell - (deprecated-package "ghc-stylish-haskell" stylish-haskell)) diff --git a/gnu/packages/haskell-check.scm b/gnu/packages/haskell-check.scm index 04d9ff6253..90ef3236b6 100644 --- a/gnu/packages/haskell-check.scm +++ b/gnu/packages/haskell-check.scm @@ -1120,7 +1120,7 @@ examples and more information.") (home-page "https://github.com/andrewthad/quickcheck-classes#readme") (synopsis "QuickCheck common typeclasses from `base`") (description - "This libary is a minimal variant of `quickcheck-classes` + "This library is a minimal variant of `quickcheck-classes` that only provides laws for typeclasses from `base`. The main purpose of splitting this out is so that `primitive` can depend on `quickcheck-classes-base` in its test suite, avoiding the diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm index 32585aa06b..d1d6e2910b 100644 --- a/gnu/packages/image-viewers.scm +++ b/gnu/packages/image-viewers.scm @@ -434,6 +434,63 @@ base should be kept small and clean to make it easy for you to dig into it and customize it for your needs.") (license license:gpl2+))) +(define-public nsxiv + (package + (name "nsxiv") + (version "27.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/nsxiv/nsxiv") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1na7f0hpc9g04nm7991gzaqr5gkj08n2azx833hgxcm2w1pnn1bk")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;no check target + #:make-flags + (list (string-append "PREFIX=" %output) + (string-append "CC=" ,(cc-for-target))) + #:phases + (modify-phases %standard-phases + (delete 'configure) ;no configure script + (add-after 'unpack 'fix-paths + (lambda* (#:key inputs #:allow-other-keys) + ;; Xft.h #includes <ft2build.h> without ‘freetype2/’. The + ;; Makefile works around this by hard-coding /usr/include & + ;; $PREFIX. + (let ((freetype (string-append (assoc-ref inputs "freetype") + "/include/freetype2"))) + (substitute* "Makefile" + (("-I/usr/include/freetype2 -I\\$\\(PREFIX\\)/include/freetype2") + (string-append "-I" freetype)))))) + (add-after 'install 'install-desktop-file + (lambda* (#:key outputs #:allow-other-keys) + (install-file "nsxiv.desktop" + (string-append (assoc-ref outputs "out") + "/share/applications")))) + (add-after 'install 'install-icons + (lambda* (#:key make-flags #:allow-other-keys) + (apply invoke "make" "-C" "icon" "install" make-flags)))))) + (inputs + `(("freetype" ,freetype) + ("giflib" ,giflib) + ("imlib2" ,imlib2) + ("libexif" ,libexif) + ("libx11" ,libx11) + ("libxft" ,libxft))) + (home-page "https://github.com/nsxiv/nsxiv") + (synopsis "Neo Simple X Image Viewer") + (description + "nsxiv is a fork of sxiv. Its primary goal is to provide the most basic +features required for fast image viewing. It has vi key bindings and works +nicely with tiling window managers. Its code base should be kept small and +clean to make it easy for you to dig into it and customize it for your +needs.") + (license license:gpl2+))) + (define-public viewnior (package (name "viewnior") diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 6b07b67e9d..c488d58416 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -2200,7 +2200,11 @@ This package can be used to create @code{favicon.ico} files for web sites.") (build-system cmake-build-system) (arguments `(#:configure-flags '("-DAVIF_CODEC_AOM=ON" "-DAVIF_CODEC_DAV1D=ON" - "-DAVIF_CODEC_RAV1E=ON" + ,@(if (string-prefix? "x86_64" + (or (%current-target-system) + (%current-system))) + '("-DAVIF_CODEC_RAV1E=ON") + '()) "-DAVIF_BUILD_TESTS=ON") #:phases (modify-phases %standard-phases @@ -2211,12 +2215,16 @@ This package can be used to create @code{favicon.ico} files for web sites.") (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (doc (string-append out "/share/doc/libavif-" ,version))) - (install-file "../source/README.md" doc) - #t)))))) + (install-file "../source/README.md" doc))))))) (inputs `(("dav1d" ,dav1d) ("libaom" ,libaom) - ("rav1e" ,rav1e))) + ;; XXX: rav1e depends on rust, which currently only works on x86_64. + ;; See also the related configure flag when changing this. + ,@(if (string-prefix? "x86_64" (or (%current-target-system) + (%current-system))) + `(("rav1e" ,rav1e)) + '()))) (synopsis "Encode and decode AVIF files") (description "Libavif is a C implementation of @acronym{AVIF, the AV1 Image File Format}. It can encode and decode all YUV formats and bit depths supported diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm index 51643819ae..3f2b0c1dec 100644 --- a/gnu/packages/julia-jll.scm +++ b/gnu/packages/julia-jll.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2021 Nicolò Balzarotti <nicolo@nixo.xyz> ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2021 Jean-Baptiste Volatier <jbv@pm.me> ;;; ;;; This file is part of GNU Guix. ;;; @@ -77,7 +78,7 @@ '(#:tests? #f ; No runtests.jl #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -117,7 +118,7 @@ compression program.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -163,7 +164,7 @@ compression program.") `(#:tests? #f ; no runtests.jl #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -205,7 +206,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -243,7 +244,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -292,7 +293,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -335,7 +336,7 @@ build tree Yggdrasil.") '(#:tests? #f ; No runtests.jl #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -377,7 +378,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -413,7 +414,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -454,7 +455,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -497,7 +498,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -541,7 +542,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -590,7 +591,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (let ((gumbo (string-append (assoc-ref inputs "gumbo-parser")))) (for-each @@ -630,7 +631,7 @@ rendering library.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -672,7 +673,7 @@ rendering library.") '(#:tests? #f #:phases (modify-phases %standard-phases - (add-after 'unpack 'custom-override-path + (add-after 'link-depot 'custom-override-path (lambda* (#:key inputs #:allow-other-keys) ;; Make @generate_wrapper_header take an optional argument that ;; guix packagers can pass to override the default "override" @@ -718,7 +719,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -754,7 +755,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -790,7 +791,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -830,7 +831,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -866,7 +867,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -903,7 +904,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -942,7 +943,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -980,7 +981,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1018,7 +1019,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1056,7 +1057,7 @@ used in autogenerated packages via @code{BinaryBuilder.jl}.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1095,7 +1096,7 @@ from util-linux.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1133,7 +1134,7 @@ from util-linux.") `(#:tests? #f ; no runtests.jl #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1175,7 +1176,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1214,7 +1215,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1252,7 +1253,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1290,7 +1291,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1328,7 +1329,7 @@ build tree Yggdrasil.") '(#:tests? #f ; No runtests.jl #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1366,7 +1367,7 @@ wrappers.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1403,7 +1404,7 @@ wrappers.") `(#:tests? #f ; no runtests.jl #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1446,7 +1447,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1482,7 +1483,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1518,7 +1519,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1556,7 +1557,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1594,7 +1595,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1645,7 +1646,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1684,7 +1685,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1721,7 +1722,7 @@ build tree Yggdrasil.") `(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (let ((libx264 (assoc-ref inputs "libx264"))) (map @@ -1762,7 +1763,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1798,7 +1799,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1838,7 +1839,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1878,7 +1879,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1915,7 +1916,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1953,7 +1954,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -1989,7 +1990,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2029,7 +2030,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2067,7 +2068,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2103,7 +2104,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2140,7 +2141,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2177,7 +2178,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2215,7 +2216,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2252,7 +2253,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2289,7 +2290,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2327,7 +2328,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2364,7 +2365,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2401,7 +2402,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2438,7 +2439,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2475,7 +2476,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2512,7 +2513,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2549,7 +2550,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2586,7 +2587,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2623,7 +2624,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2659,7 +2660,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2702,7 +2703,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2740,7 +2741,7 @@ build tree Yggdrasil.") '(#:tests? #f ; no runtests #:phases (modify-phases %standard-phases - (add-after 'unpack 'override-binary-path + (add-after 'link-depot 'override-binary-path (lambda* (#:key inputs #:allow-other-keys) (map (lambda (wrapper) @@ -2759,3 +2760,41 @@ build tree Yggdrasil.") (synopsis "Zstd library wrappers") (description "This package provides a wrapper for the zstd library.") (license license:expat))) + +(define-public julia-sundials-jll + (package + (name "julia-sundials-jll") + (version "5.2.1+0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaBinaryWrappers/Sundials_jll.jl") + (commit (string-append "Sundials-v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0cijb9frq8gj8bjpqf2lr5d0jxlj262y6h6xi4z3536dingrvffc")))) + (build-system julia-build-system) + (arguments + '(#:tests? #f ; no runtests + #:phases + (modify-phases %standard-phases + (add-after 'link-depot 'override-binary-path + (lambda* (#:key inputs #:allow-other-keys) + (map + (lambda (wrapper) + (substitute* wrapper + (("global artifact_dir.*") + (string-append + "global artifact_dir = \"" + (assoc-ref inputs "sundials") "\"\n")))) + ;; There's a Julia file for each platform, override them all + (find-files "src/wrappers/" "\\.jl$"))))))) + (inputs + `(("sundials" ,sundials-julia))) + (propagated-inputs + `(("julia-jllwrappers" ,julia-jllwrappers))) + (home-page "https://github.com/JuliaBinaryWrappers/Sundials_jll.jl") + (synopsis "SUndials library wrappers") + (description "This package provides a wrapper for the sundials library.") + (license license:expat))) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 93fadf318c..547d2bf81e 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -410,7 +410,8 @@ structures.") ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182 (arguments '(#:tests? #f - #:julia-package-name "BufferedStreams")) + #:julia-package-name "BufferedStreams" + #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d")) (propagated-inputs `(("julia-compat" ,julia-compat))) (home-page "https://github.com/BioJulia/BufferedStreams.jl") (synopsis "Fast composable IO streams") @@ -778,12 +779,12 @@ way.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'fix-tests + (add-after 'link-depot 'fix-tests (lambda _ (substitute* "test/runtests.jl" (("option.toml") "test/option.toml")) #t)) - (add-after 'unpack 'dont-use-exproniconlite + (add-after 'link-depot 'dont-use-exproniconlite (lambda _ (substitute* '("Project.toml" "src/Configurations.jl" @@ -919,7 +920,7 @@ dependency on it.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-failing-test + (add-after 'link-depot 'skip-failing-test (lambda _ ;; Tests with non-standard colors. (substitute* "test/show.jl" @@ -1022,7 +1023,7 @@ without having to take direct dependencies.") `(#:tests? #f ; Tests need upgrading with newer Julia version. #:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-known-failing-tests + (add-after 'link-depot 'skip-known-failing-tests (lambda _ ;; See upstream report: ;; https://github.com/queryverse/DataValues.jl/issues/83 @@ -1100,7 +1101,7 @@ dictionaries in Julia, for improved productivity and performance.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-flakey-tests + (add-after 'link-depot 'skip-flakey-tests (lambda _ ;; Some combination of these tests fail nondeterministically ;; each of the times this package is built. @@ -1166,14 +1167,14 @@ valuable enough at this time.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-source + (add-after 'link-depot 'patch-source (lambda* (#:key inputs #:allow-other-keys) (substitute* "src/Deps.jl" (("pip install") (string-append (assoc-ref inputs "python") "/bin/pip install"))) #t)) - (add-after 'unpack 'remove-javascript-downloads + (add-after 'link-depot 'remove-javascript-downloads (lambda _ (substitute* "src/Writers/HTMLWriter.jl" (("cdnjs.cloudflare.com") "example.com")) @@ -1352,7 +1353,7 @@ stressing the robustness of differentiation tools.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'adjust-test-suite + (add-after 'link-depot 'adjust-test-suite (lambda _ (substitute* "test/runtests.jl" ;; Seems to not play nicely with SpecialFunctions @@ -1386,7 +1387,7 @@ combinations of dual numbers with predefined Julia numeric types.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'adjust-test-suite + (add-after 'link-depot 'adjust-test-suite (lambda _ (substitute* "test/runtests.jl" ;; Seems to not play nicely with Julia-1.6. @@ -1438,7 +1439,7 @@ before (or after)\".") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-network-tests + (add-after 'link-depot 'skip-network-tests (lambda _ (substitute* "test/runtests.jl" ;; This test tries to access the Julia package registry. @@ -1517,7 +1518,7 @@ need the ffmpeg binaries + executables, and don't want the overhead of `(#:phases (modify-phases %standard-phases (delete 'reset-gzip-timestamps) - (add-after 'unpack 'skip-network-tests + (add-after 'link-depot 'skip-network-tests (lambda _ ;; These tests try to download audio/video files. (substitute* "test/query.jl" @@ -1677,7 +1678,7 @@ using finite difference.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'disable-failing-test + (add-after 'link-depot 'disable-failing-test (lambda* (#:key outputs #:allow-other-keys) (substitute* "test/fixed.jl" ;; A deprecation warning is not thrown @@ -1764,7 +1765,7 @@ differentiation (AD).") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'adjust-tests + (add-after 'link-depot 'adjust-tests (lambda _ (substitute* "test/runtests.jl" (("testset \\\"Abstract.*" all) @@ -1817,7 +1818,7 @@ update step.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-failing-test + (add-after 'link-depot 'skip-failing-test (lambda _ (substitute* "test/runtests.jl" ((".*RPLE.*") ""))))))) @@ -1844,7 +1845,7 @@ update step.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'adjust-test-suite + (add-after 'link-depot 'adjust-test-suite (lambda _ (substitute* "test/runtests.jl" ((".*lapack.*") ""))))))) @@ -1875,7 +1876,7 @@ algebra routines written in Julia (except for optimized BLAS).") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'adjust-test-suite + (add-after 'link-depot 'adjust-test-suite (lambda _ (substitute* "test/complex.jl" ;; expected Array{Int32,1}, got a value of type Array{Int64,1} @@ -1912,13 +1913,13 @@ matrices the Schur form is often more useful.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'remove-earcut + (add-after 'link-depot 'remove-earcut (lambda _ (substitute* '("Project.toml" "src/GeometryBasics.jl") ((".*EarCut.*") "")) #t)) - (add-after 'unpack 'skip-incompatible-test + (add-after 'link-depot 'skip-incompatible-test (lambda _ (substitute* "test/runtests.jl" (("@testset.*MetaT and heterogeneous data.*" all) @@ -2268,7 +2269,7 @@ be downscaled to fit into the size of your active terminal session.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-failing-test + (add-after 'link-depot 'skip-failing-test (lambda _ ;; These tests try to download from the imagemagick.org (substitute* "test/runtests.jl" @@ -2465,7 +2466,7 @@ indexed images, sometimes called \"colormap images\" or \"paletted images.\"") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'remove-timezones.jl + (add-after 'link-depot 'remove-timezones.jl (lambda _ (substitute* "test/runtests.jl" (("using TimeZones.*") "") @@ -2864,7 +2865,7 @@ comes from the fact that @code{M == map(f, A)}.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-failing-test + (add-after 'link-depot 'skip-failing-test (lambda _ ;; Tests with math functions are hard. (substitute* "test/test_ul.jl" @@ -2981,7 +2982,8 @@ resolving them into absolute units.") (build-system julia-build-system) ;; Package without Project.toml (arguments - '(#:julia-package-name "Media")) + '(#:julia-package-name "Media" + #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27")) (propagated-inputs `(("julia-macrotools" ,julia-macrotools))) (home-page "https://github.com/JunoLab/Media.jl") @@ -3202,7 +3204,7 @@ interface to interact with these types.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-cuda-tests + (add-after 'link-depot 'skip-cuda-tests (lambda _ (substitute* "test/runtests.jl" (("using CUDA") "") @@ -3238,7 +3240,8 @@ doesn't provide any other \"high-level\" functionality like layers or AD.") (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9")))) (build-system julia-build-system) (arguments - `(#:julia-package-name "OptimTestProblems")) + `(#:julia-package-name "OptimTestProblems" + #:julia-package-uuid "cec144fc-5a64-5bc6-99fb-dde8f63e154c")) (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl") (synopsis "Collection of optimization test problems") (description "The purpose of this package is to provide test problems for @@ -3528,7 +3531,7 @@ everything from run time algorithm choice to code generation at compile time.") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-color-tests + (add-after 'link-depot 'skip-color-tests (lambda _ (substitute* "test/text_backend.jl" ((".*colors\\.jl.*") "")) @@ -3547,7 +3550,7 @@ human-readable format.") (define-public julia-pycall (package (name "julia-pycall") - (version "1.92.3") + (version "1.92.5") (source (origin (method git-fetch) @@ -3557,7 +3560,7 @@ human-readable format.") (file-name (git-file-name name version)) (sha256 (base32 - "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq")))) + "1fj5d1ihnhnm0pl4hbx6hcd2bpdyhm8jiaqah2axsbd069j70saf")))) (build-system julia-build-system) (arguments `(#:imported-modules ((guix build python-build-system) @@ -3567,7 +3570,7 @@ human-readable format.") ((guix build python-build-system) #:prefix python:)) #:phases (modify-phases %standard-phases - (add-after 'unpack 'remove-conda + (add-after 'link-depot 'remove-conda (lambda _ (substitute* "Project.toml" ((".*Conda.*") "")) @@ -3577,7 +3580,7 @@ human-readable format.") (substitute* "deps/depsutils.jl" (("Conda.PYTHONDIR") "\"/\"")) #t)) - (add-after 'unpack 'set-python + (add-after 'link-depot 'set-python (lambda* (#:key inputs outputs #:allow-other-keys) (let ((python (assoc-ref inputs "python"))) (setenv "PYCALL_JL_RUNTIME_PYTHON" @@ -3690,7 +3693,7 @@ arbitrary normed vector spaces (e.g. matrix-valued integrands).") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'hardcode-libmath-location + (add-after 'link-depot 'hardcode-libmath-location (lambda* (#:key inputs #:allow-other-keys) (let ((gcclib (assoc-ref inputs "gcc:lib"))) (substitute* "src/Quadmath.jl" @@ -4082,7 +4085,8 @@ through matrix-vector multiplication.") (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96")))) (build-system julia-build-system) (arguments - `(#:julia-package-name "SafeTestsets")) + `(#:julia-package-name "SafeTestsets" + #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f")) (native-inputs `(("julia-staticarrays" ,julia-staticarrays))) (home-page "https://github.com/YingboMa/SafeTestsets.jl") @@ -4308,7 +4312,7 @@ some performance improvements).") (arguments `(#:phases (modify-phases %standard-phases - (add-after 'unpack 'skip-doctest + (add-after 'link-depot 'skip-doctest (lambda _ (substitute* "test/runtests.jl" ((".*doctest.*") "")) @@ -4811,6 +4815,7 @@ types, modules, and dictionaries.") (build-system julia-build-system) (arguments '(#:julia-package-name "URIs" ;required to run tests + #:julia-package-uuid "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" #:phases (modify-phases %standard-phases (add-before 'check 'change-dir @@ -4818,7 +4823,7 @@ types, modules, and dictionaries.") (lambda* (#:key source outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) (chdir - (string-append out "/share/julia/packages/URIs/test"))) + (string-append out "/share/julia/loadpath/URIs/test"))) #t))))) ;; required for tests (inputs `(("julia-json" ,julia-json))) diff --git a/gnu/packages/julia.scm b/gnu/packages/julia.scm index 636bdc57c1..e621c8b936 100644 --- a/gnu/packages/julia.scm +++ b/gnu/packages/julia.scm @@ -131,6 +131,8 @@ "19spqc3xsazn1xs9gpcgv9ldadfkv49rmc5khl7sf1dlmhgi4602") '("llvm-7.0-D44650" "1h55kkmkiisfj6sk956if2bcj9s0v6n5czn8dxb870vp5nccj3ir") + '("llvm7-symver-jlprefix" + "00ng32x6xhm9czczirn5r1q1mc1myad44fqhi061hwh1vb46dwgm") '("llvm-6.0-DISABLE_ABI_CHECKS" "014fawd1ba7yckalypfld22zgic87x9nx3cim42zrwygywd36pyg") '("llvm9-D50010-VNCoercion-ni" @@ -211,7 +213,8 @@ ;; "-DLLVM_DEFAULT_TARGET_TRIPLE=${stdenv.hostPlatform.config}" ;; "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=WebAssembly" "-DLLVM_ENABLE_DUMP=ON" - "-DLLVM_LINK_LLVM_DYLIB=ON")))) + "-DLLVM_LINK_LLVM_DYLIB=ON" + "-DLLVM_VERSION_SUFFIX:STRING=jl")))) (inputs (append (package-inputs llvm-11) @@ -272,7 +275,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.") (define-public julia (package (name "julia") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (string-append @@ -280,7 +283,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.") version "/julia-" version ".tar.gz")) (sha256 (base32 - "0plbj4laifzz8ppk889iv3gaxj1mdddzv7yad6ghml6bfnn24r6m")) + "1515x8fs25l3f9csbmd1v4nm041zvjnvigy6s5iidy4yrkwdx4r5")) (patches (search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch")))) (build-system gnu-build-system) @@ -552,7 +555,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.") (basename file))))) (find-files (string-append (assoc-ref inputs pkgname) "/lib") pred))))) - (link "llvm" "libLLVM-11\\.so") + (link "llvm" "libLLVM-11jl\\.so") (link "utf8proc" "libutf8proc\\.so") #t))) (add-after 'install 'make-wrapper @@ -672,7 +675,7 @@ libraries. It is also a bit like @code{ldd} and @code{otool -L}.") (native-search-paths (list (search-path-specification (variable "JULIA_LOAD_PATH") - (files (list "share/julia/packages/"))) + (files (list "share/julia/loadpath/"))) (search-path-specification (variable "JULIA_DEPOT_PATH") (files (list "share/julia/"))))) diff --git a/gnu/packages/kodi.scm b/gnu/packages/kodi.scm index 2c641b85a0..2416fb1c61 100644 --- a/gnu/packages/kodi.scm +++ b/gnu/packages/kodi.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -403,7 +404,7 @@ alternatives. In compilers, this can reduce the cascade of secondary errors.") ("ffmpeg" ,ffmpeg) ("flac" ,flac) ("flatbuffers" ,flatbuffers) - ("fmt" ,fmt) + ("fmt" ,fmt-7) ("fontconfig" ,fontconfig) ("freetype" ,freetype) ("fribidi" ,fribidi) diff --git a/gnu/packages/libevent.scm b/gnu/packages/libevent.scm index 0ca903f5c2..d7a2642310 100644 --- a/gnu/packages/libevent.scm +++ b/gnu/packages/libevent.scm @@ -140,14 +140,14 @@ resolution, asynchronous file system operations, and threading primitives.") (package (inherit libuv) (name "libuv") - (version "1.40.0") + (version "1.42.0") (source (origin (method url-fetch) (uri (string-append "https://dist.libuv.org/dist/v" version "/libuv-v" version ".tar.gz")) (sha256 (base32 - "1551k3ab27vbg9517l9b4iqbramwxdkwgpf53knas05cbfwhvab1")))) + "0wpb9pz3r8nksnrf4zbixj2kk9whr7abi45ydrwyv2js2ljrc4j3")))) (properties '((hidden? . #t))))) (define-public perl-anyevent diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 7005774b1d..c838958f73 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -353,7 +353,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." ;; The current "stable" kernels. That is, the most recently released major ;; versions that are still supported upstream. -(define-public linux-libre-5.14-version "5.14.16") +(define-public linux-libre-5.14-version "5.14.18") (define-public linux-libre-5.14-gnu-revision "gnu") (define deblob-scripts-5.14 (linux-libre-deblob-scripts @@ -363,7 +363,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "024rz0bp3n3r5nkwbib7byx10d72c2fh5cw9iv00diyzgnp819g7"))) (define-public linux-libre-5.14-pristine-source (let ((version linux-libre-5.14-version) - (hash (base32 "005wis2y5dhksb6n0r4p3xjldppmdnd360dhxa04rfc4z2qwn3f3"))) + (hash (base32 "1pr7qh2wjw7h6r3fixg9ia5r3na7vdb6b4sp9wnbifnqckahzwis"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.14))) @@ -371,7 +371,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." ;; The "longterm" kernels — the older releases with long-term upstream support. ;; Here are the support timelines: ;; <https://www.kernel.org/category/releases.html> -(define-public linux-libre-5.10-version "5.10.77") +(define-public linux-libre-5.10-version "5.10.79") (define-public linux-libre-5.10-gnu-revision "gnu1") (define deblob-scripts-5.10 (linux-libre-deblob-scripts @@ -381,12 +381,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "024rz0bp3n3r5nkwbib7byx10d72c2fh5cw9iv00diyzgnp819g7"))) (define-public linux-libre-5.10-pristine-source (let ((version linux-libre-5.10-version) - (hash (base32 "1hwgbcfv9wfx9ka25lsqjrnzskynfgmswcyp5vk14wnxq7glxdnk"))) + (hash (base32 "1bd86ywff2mv73sybjdjlvvvhnmsv891jlm17h5nvqifdbhmb6g4"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.10))) -(define-public linux-libre-5.4-version "5.4.157") +(define-public linux-libre-5.4-version "5.4.159") (define-public linux-libre-5.4-gnu-revision "gnu1") (define deblob-scripts-5.4 (linux-libre-deblob-scripts @@ -396,12 +396,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1a0k9i8gnzkyvfr80f8xw2fnxfwddhz1pzicz9fh0y3jzzkzk45p"))) (define-public linux-libre-5.4-pristine-source (let ((version linux-libre-5.4-version) - (hash (base32 "0jl62j22vs59bc90mvzavv0ii9hvk436pbnrpqf3x9f8nfybngwz"))) + (hash (base32 "0hw68yjf0c8kahwra8hq863318cbyqc89f429z75scmb9rgk466p"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.4))) -(define-public linux-libre-4.19-version "4.19.215") +(define-public linux-libre-4.19-version "4.19.217") (define-public linux-libre-4.19-gnu-revision "gnu1") (define deblob-scripts-4.19 (linux-libre-deblob-scripts @@ -411,12 +411,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1a0k9i8gnzkyvfr80f8xw2fnxfwddhz1pzicz9fh0y3jzzkzk45p"))) (define-public linux-libre-4.19-pristine-source (let ((version linux-libre-4.19-version) - (hash (base32 "1czjqa5wbsmzgl7wwqlp9qbdig45ibq11m9pcykrjaclrgwn884y"))) + (hash (base32 "01500jcjvhbkn7xcan564jw0nnwc12cf8hhvl8118jqqqw612lc5"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.19))) -(define-public linux-libre-4.14-version "4.14.254") +(define-public linux-libre-4.14-version "4.14.255") (define-public linux-libre-4.14-gnu-revision "gnu1") (define deblob-scripts-4.14 (linux-libre-deblob-scripts @@ -426,12 +426,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1a0k9i8gnzkyvfr80f8xw2fnxfwddhz1pzicz9fh0y3jzzkzk45p"))) (define-public linux-libre-4.14-pristine-source (let ((version linux-libre-4.14-version) - (hash (base32 "0ihdlsg4jg9wwhhcbjjmrcchnl9pc0szh21nwmbhwnxgqcdmrnfz"))) + (hash (base32 "1mxjwqijnlvrdbpd973kdycz1dwklfkj9vpnj1cihgsf880q02zh"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.14))) -(define-public linux-libre-4.9-version "4.9.289") +(define-public linux-libre-4.9-version "4.9.290") (define-public linux-libre-4.9-gnu-revision "gnu1") (define deblob-scripts-4.9 (linux-libre-deblob-scripts @@ -441,12 +441,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1a0k9i8gnzkyvfr80f8xw2fnxfwddhz1pzicz9fh0y3jzzkzk45p"))) (define-public linux-libre-4.9-pristine-source (let ((version linux-libre-4.9-version) - (hash (base32 "19kz74qgw5yzfinnsvljmn2zm855lr4cxgfpn8gwljmkspyx1hm5"))) + (hash (base32 "1ns0xbcgv0ix4b3xkcws8g3ks1a31kzc5whmkf9arz1k8si5mpnd"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.9))) -(define-public linux-libre-4.4-version "4.4.291") +(define-public linux-libre-4.4-version "4.4.292") (define-public linux-libre-4.4-gnu-revision "gnu1") (define deblob-scripts-4.4 (linux-libre-deblob-scripts @@ -456,7 +456,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1a0k9i8gnzkyvfr80f8xw2fnxfwddhz1pzicz9fh0y3jzzkzk45p"))) (define-public linux-libre-4.4-pristine-source (let ((version linux-libre-4.4-version) - (hash (base32 "0lbbvv3ha4d8nwzjh8bdk0aqyd12w6gw0nsxsdnp8pbmnndgb9vh"))) + (hash (base32 "0v5rz8na1d458grc49x3j1951mhvxvqzjq5g9rv1hi0p9rjala97"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.4))) @@ -1002,9 +1002,6 @@ It has been modified to remove all non-free binary blobs.") ("CONFIG_RTC_DRV_RK808" . #t)) %default-extra-linux-options))) -(define-public linux-libre-arm-veyron - (deprecated-package "linux-libre-arm-veyron" linux-libre-arm-generic)) - (define-public linux-libre-arm-generic-5.10 (make-linux-libre* linux-libre-5.10-version linux-libre-5.10-gnu-revision @@ -6597,7 +6594,7 @@ of flash storage.") (define-public libseccomp (package (name "libseccomp") - (version "2.5.2") + (version "2.5.3") (source (origin (method url-fetch) (uri (string-append "https://github.com/seccomp/libseccomp/" @@ -6605,7 +6602,7 @@ of flash storage.") "/libseccomp-" version ".tar.gz")) (sha256 (base32 - "1pw7rd4gwqpmraipgdqkdkhnx4ql35wrn3lnjgl6pncinkgm59hp")))) + "0xhan73zn4p0n7s8vx6s47wjmidvk4x8r90vfbljairn6f3mq1jr")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("--disable-static") diff --git a/gnu/packages/lisp-check.scm b/gnu/packages/lisp-check.scm index ca00e5054e..a66a7ba47e 100644 --- a/gnu/packages/lisp-check.scm +++ b/gnu/packages/lisp-check.scm @@ -298,8 +298,8 @@ that of Eos has not. Thus, Eos is now deprecated in favor of FiveAM.") (sbcl-package->ecl-package sbcl-eos)) (define-public sbcl-fiasco - (let ((commit "d62f7558b21addc89f87e306f65d7f760632655f") - (revision "1")) + (let ((commit "bb47d2fef4eb24cc16badc1c9a73d73c3a7e18f5") + (revision "2")) (package (name "sbcl-fiasco") (version (git-version "0.0.1" revision commit)) @@ -312,7 +312,7 @@ that of Eos has not. Thus, Eos is now deprecated in favor of FiveAM.") (file-name (git-file-name "fiasco" version)) (sha256 (base32 - "1zwxs3d6iswayavcmb49z2892xhym7n556d8dnmvalc32pm9bkjh")))) + "1k8i2kq57201bvy3zfpsxld530hd104dgbglxigqb6i408c1a7aw")))) (build-system asdf-build-system/sbcl) (inputs `(("alexandria" ,sbcl-alexandria) @@ -396,6 +396,47 @@ with a focus on interactive development.") (define-public ecl-hu.dwim.stefil (sbcl-package->ecl-package sbcl-hu.dwim.stefil)) +(define-public sbcl-kaputt + (let ((commit "f26c9b0f8219fe61d86249198ef85174eecafc10") + (revision "1")) + (package + (name "sbcl-kaputt") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/foretspaisibles/cl-kaputt") + (commit commit))) + (file-name (git-file-name "kaputt" version)) + (sha256 + (base32 "10a78032vnf12kjjpfmq9ign38cad237ycyq37dwnx922nxjjaj4")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cl-ppcre" ,sbcl-cl-ppcre))) + (home-page "https://github.com/foretspaisibles/cl-kaputt") + (synopsis "Simple interactive test framework for Common Lisp") + (description + "KAPUTT is a test framework for Common Lisp that focuses on the +following features: + +@itemize +@item KAPUTT is simple, it only defines three abstractions testcase, assertion +and protocol and does not add any artefact on the backtrace when errors occur. + +@item KAPUTT is extensible, it is possible to add problem-specific assertions +to make test code more informative. + +@item KAPUTT fits well interactive development. +@end itemize\n") + (license license:cecill-b)))) + +(define-public ecl-kaputt + (sbcl-package->ecl-package sbcl-kaputt)) + +(define-public cl-kaputt + (sbcl-package->cl-source-package sbcl-kaputt)) + (define-public sbcl-lift (let ((commit "2594160d6ca3a77d8750110dfa63214256aab852") (revision "2")) diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm index 1097118fb3..10a2391f18 100644 --- a/gnu/packages/lisp-xyz.scm +++ b/gnu/packages/lisp-xyz.scm @@ -3230,7 +3230,7 @@ is a library for creating graphical user interfaces.") (define-public sbcl-cl-webkit (package (name "sbcl-cl-webkit") - (version "3.0.0") + (version "3.2.0") (source (origin (method git-fetch) @@ -3240,7 +3240,7 @@ is a library for creating graphical user interfaces.") (file-name (git-file-name "cl-webkit" version)) (sha256 (base32 - "015xry1cvbgspfzz35ifz2qscz946ljhj2z8rzjscy9v8fgnjsdk")))) + "1c0kas8k02167v5f1gjbhy3741b7ky91x7lkc5bh5429jmbpiapf")))) (build-system asdf-build-system/sbcl) (inputs `(("cffi" ,sbcl-cffi) @@ -5775,6 +5775,46 @@ offered, one SAX-like, the other similar to StAX.") (define-public ecl-cxml (sbcl-package->ecl-package sbcl-cxml)) +(define-public sbcl-cxml-rng + (let ((commit "bdcfeb92798694b2935a8321e641d8803e814b7b") + (revision "1")) + (package + (name "sbcl-cxml-rng") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "http://www.lichteblau.com/git/cxml-rng.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1rld038hmvm0whaffkszd5ks7mg44z1vfbgddal434df8sgspzql")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cxml" ,sbcl-cxml) + ("cl-ppcre" ,sbcl-cl-ppcre) + ("yacc" ,sbcl-cl-yacc) + ("parse-number" ,sbcl-parse-number) + ("cl-base64" ,sbcl-cl-base64))) + (synopsis "Relax NG for Closure XML (CXML)") + (description "An implementation of Relax NG schema validation written in +Common Lisp, including support for compact syntax, DTD Compatibility, and the +XSD type library.") + (home-page "http://www.lichteblau.com/cxml-rng/") + (license license:x11-style)))) + +(define-public cl-cxml-rng + (sbcl-package->cl-source-package sbcl-cxml-rng)) + +;; FIXME: Fails on ECL with +;; In function STRUCTURE-SET, the value of the first argument is +;; #<empty 0x7fffeb0fd440> +;; which is not of the expected type %TYPED-PATTERN. +;; (define-public ecl-cxml-rng +;; (sbcl-package->ecl-package sbcl-cxml-rng)) + (define-public sbcl-cl-reexport (let ((commit "312f3661bbe187b5f28536cd7ec2956e91366c3b") (revision "1")) @@ -14123,10 +14163,10 @@ standard library.") (sbcl-package->cl-source-package sbcl-shlex)) (define-public sbcl-cmd - (let ((commit "8ace7fb45f2ecf0eefae28583ee36c941d142179")) + (let ((commit "b0b79adf1214dbec082f3dd2274a72a0ff58efd7")) (package (name "sbcl-cmd") - (version (git-version "0.0.1" "4" commit)) + (version (git-version "0.0.1" "5" commit)) (source (origin (method git-fetch) @@ -14135,7 +14175,7 @@ standard library.") (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "1da8sa0fsvsdivnx2s9m6jbb7yszrnkqqcxrn1sszp7k6iwnnkgi")))) + (base32 "0kk29vydmi1fyhpbwy3mrsg3bhvx0478r6r7jcsfkr3ci2h8w8a1")))) (build-system asdf-build-system/sbcl) (inputs `(("alexandria" ,sbcl-alexandria) @@ -17561,6 +17601,44 @@ fit together as required by any particular game.") (define-public cl-trial (sbcl-package->cl-source-package sbcl-trial)) +(define-public sbcl-alloy + (let ((commit "e86e22c2887836ec31cd97e039f0bca5248d8f1c") + (revision "1")) + (package + (name "sbcl-alloy") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Shirakumo/alloy") + (commit commit))) + (file-name (git-file-name "alloy" version)) + (sha256 + (base32 "1jsqjr6sf86hcdvnjp4gd10qv0r7kfkr9hmda85irb5lha4q9n7w")))) + (build-system asdf-build-system/sbcl) + (native-inputs + `(("alexandria" ,sbcl-alexandria) + ("parachute" ,sbcl-parachute))) + (inputs + `(("array-utils" ,sbcl-array-utils) + ("closer-mop" ,sbcl-closer-mop) + ("documentation-utils" ,sbcl-documentation-utils))) + (home-page "https://shirakumo.github.io/alloy/") + (synopsis + "Common Lisp user interface protocol and toolkit implementation") + (description + "Alloy is a user interface toolkit. It is defined through a set of +protocols that allow for a clear interface, as well as a standardised way to +integrate Alloy into a target backend.") + (license license:zlib)))) + +(define-public ecl-alloy + (sbcl-package->ecl-package sbcl-alloy)) + +(define-public cl-alloy + (sbcl-package->cl-source-package sbcl-alloy)) + (define-public sbcl-org-sampler (let ((commit "ee135a417750e5b1d810bb9574eb85223cb3038a") (revision "1")) @@ -18627,6 +18705,124 @@ terminals.") (define-public ecl-clinenoise (sbcl-package->ecl-package sbcl-clinenoise)) +(define-public sbcl-periodic-table + (package + (name "sbcl-periodic-table") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://common-lisp.net/project/chemboy/periodic-table-" + version ".tar.gz")) + (sha256 + (base32 "1ircvqm3q93ma4rxbxprb1i9rcax10ld6xmdzdhfnigr27sh5jvg")))) + (build-system asdf-build-system/sbcl) + (home-page "https://common-lisp.net/project/chemboy/") + (synopsis "Periodic table for Common Lisp") + (description + "This package defines a Common Lisp package, @code{:elements}, with an +@code{ELEMENT} structure and a number of functions to search the periodic +table.") + (license license:llgpl))) + +(define-public cl-periodic-table + (sbcl-package->cl-source-package sbcl-periodic-table)) + +(define-public ecl-periodic-table + (sbcl-package->ecl-package sbcl-periodic-table)) + +(define-public sbcl-chemical-compounds + (package + (name "sbcl-chemical-compounds") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (string-append + "https://common-lisp.net/project/chemboy/chemical-compounds-" + version ".tar.gz")) + (sha256 + (base32 "12fd8a6ay5qlsq4givzgh9d55mbg4ci2vvmymig6pjl2ms64v0pf")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("periodic-table" ,sbcl-periodic-table))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-files + (lambda _ + ;; Fix incorrect version number. + (substitute* "chemical-compounds.asd" + ((":version \"1.0.1\"") + (string-append ":version \"" ,version "\""))) + ;; Remove incorrect declaration of string type. + (substitute* "parsing.lisp" + (("\\(declare \\(simple-base-string string\\)") + "(declare"))))))) + (home-page "https://common-lisp.net/project/chemboy/") + (synopsis "Chemical formula parser and pretty-printer for Common Lisp") + (description + "It can sometimes be useful to be able to parse chemical compounds in a +user-friendly syntax into easy-to-manipulate s-expressions. You also want to +be able to go in reverse. You could probably write your own parser — or you +could just install the chemical-compounds package.") + (license license:llgpl))) + +(define-public cl-chemical-compounds + (sbcl-package->cl-source-package sbcl-chemical-compounds)) + +(define-public ecl-chemical-compounds + (sbcl-package->ecl-package sbcl-chemical-compounds)) + +(define-public sbcl-chemboy + (package + (name "sbcl-chemboy") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (string-append + "https://common-lisp.net/project/chemboy/chemboy-" + version ".tar.gz")) + (sha256 + (base32 "0lr134l16mjcgdj3fm2yff4chlfbihn1sji7q80y7lnr176zgs7d")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("chemical-compounds" ,sbcl-chemical-compounds) + ("periodic-table" ,sbcl-periodic-table))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-files + (lambda _ + ;; Fix incorrect version number. + (substitute* "chemboy.asd" + ((":version \"0.2\"") + (string-append ":version \"" ,version "\""))) + ;; Remove incorrect declaration of string type. + (substitute* "query-parsing.lisp" + (("\\(declare \\(simple-base-string string\\)") + "(declare")) + ;; Fix incorrect function calls. + (substitute* "conversions.lisp" + (("\\(pprint-compound element s\\)") + "(pprint-compound element :stream s)") + (("\\(pprint-compound parsed-compound s\\)") + "(pprint-compound parsed-compound :stream s)"))))))) + (home-page "https://common-lisp.net/project/chemboy/") + (synopsis "Common Lisp program for doing basic chemistry calculations") + (description + "Chemboy is a Common Lisp program for doing basic chemistry calculations. +This package provides the text-based interface for Chemboy.") + (license license:llgpl))) + +(define-public cl-chemboy + (sbcl-package->cl-source-package sbcl-chemboy)) + +(define-public ecl-chemboy + (sbcl-package->ecl-package sbcl-chemboy)) + (define-public sbcl-cl-pass (let ((commit "e58e97c0c0588dc742c061208afb9bc31e4dbd34") (revision "1")) @@ -18660,3 +18856,397 @@ terminals.") (define-public ecl-cl-pass (sbcl-package->ecl-package sbcl-cl-pass)) + +(define-public sbcl-cl-tld + ;; No release. + (let ((commit "6529c70042cf6e82be39bc522e87ad87da08f1c9")) + (package + (name "sbcl-cl-tld") + (version (git-version "0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/lu4nx/cl-tld") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1l6f0sak90pqjzkrjg0cyk7gv9h8gwpfvc0964z98dw2nj3hakqb")))) + (build-system asdf-build-system/sbcl) + (home-page "https://github.com/lu4nx/cl-tld/") + (synopsis "Extract the Top Level Domain from domains, in Common Lisp") + (description + "This library extracts the TLD (Top Level Domain) from domains. The +information is taken from @url{https://publicsuffix.org}.") + (license license:public-domain)))) + +(define-public cl-tld + (sbcl-package->cl-source-package sbcl-cl-tld)) + +(define-public ecl-cl-tld + (sbcl-package->ecl-package sbcl-cl-tld)) + +(define-public sbcl-cl-strftime + ;; No release. + (let ((commit "21cb57f2595faa26d687893963f24ec41822b63c")) + (package + (name "sbcl-cl-strftime") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ruricolist/cl-strftime/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00c8hq7vzgb89ab3q7mrp60x743kiqmsk1g51ynhxlqhph2bnslf")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("local-time" ,sbcl-local-time) + ("ppcre" ,sbcl-cl-ppcre) + ("serapeum" ,sbcl-serapeum))) + (native-inputs + `(("fiveam" ,sbcl-fiveam) + ("cffi" ,sbcl-cffi))) + (home-page "https://github.com/ruricolist/cl-strftime") + (synopsis "Common Lisp compiler for the strftime language") + (description + "CL-STRFTIME is a Common Lisp compiler for the strftime “language.”") + (license license:expat)))) + +(define-public cl-strftime + (sbcl-package->cl-source-package sbcl-cl-strftime)) + +(define-public ecl-cl-strftime + (sbcl-package->ecl-package sbcl-cl-strftime)) + +(define-public sbcl-exit-hooks + ;; No release. + (let ((commit "78050f4f55c138fcea86a9d720928782021b6012")) + (package + (name "sbcl-exit-hooks") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ailisp/exit-hooks/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00rk0pr2cy3hy6giblh166b7yrg06d5lanipjcqv508gkfb0vi47")))) + (build-system asdf-build-system/sbcl) + (home-page "https://github.com/ailisp/exit-hooks") + (synopsis "Call functions automatically when Common Lisp exits") + (description + "@code{exit-hooks} provides a portable way to automatically call some +user-defined function when exiting Common Lisp (both @code{quit} from the REPL +or a kill in a shell). Like @code{atexit} in C and Python or Java’s +@code{Runtime.addShutdownHook()}. It currently supports SBCL, CCL, ECL, ABCL, +Allegro CL, clisp and CMUCL. Before exit-hooks, there was no portable way of +doing so and no staightforward way to use an exit hook on ABCL. It can be used +for tasks like parmenantly save something when exiting Lisp.") + (license license:bsd-2)))) + +(define-public cl-exit-hooks + (sbcl-package->cl-source-package sbcl-exit-hooks)) + +(define-public ecl-exit-hooks + (sbcl-package->ecl-package sbcl-exit-hooks)) + +(define-public sbcl-cl-base58 + (let ((commit "f446835b4104896e0eed6a61d2ceb4ad22f589d8") + (revision "1")) + (package + (name "sbcl-cl-base58") + (version (git-version "0.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/eudoxia0/cl-base58/") + (commit commit))) + (file-name (git-file-name "cl-base58" version)) + (sha256 + (base32 "01wiiyz1jzxx3zhxi2hpq5n8hv28g1mn0adk793vwjzh4v5bi5zz")))) + (build-system asdf-build-system/sbcl) + (arguments + '(#:asd-systems '("cl-base58-test" "cl-base58") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + (substitute* "cl-base58-test.asd" + (("cl-test-more") + "prove")) + #t))))) + (native-inputs + `(("prove" ,sbcl-prove))) + (home-page "https://github.com/eudoxia0/cl-base58") + (synopsis "Implementation of base58 for Common Lisp") + (description + "This library implements the @code{base58} encoding algorithm. It's +basically @code{base64} but with a smaller alphabet (58, as in the name) that +doesn't include similar looking characters, among other things. See +@url{https://github.com/bitcoin/bitcoin/blob/master/src/base58.h} for a full +reference.") + (license license:expat)))) + +(define-public cl-base58 + (sbcl-package->cl-source-package sbcl-cl-base58)) + +(define-public ecl-cl-base58 + (sbcl-package->ecl-package sbcl-cl-base58)) + +(define-public sbcl-bit-smasher + ;; No release. + (let ((commit "c2dcb3b5ec0e485484be681fe17c4e81e58790d9")) + (package + (name "sbcl-bit-smasher") + (version (git-version "1.0.2" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/thephoeron/bit-smasher/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0wjmwn06fjpw0rlpaksf3ab727p8fnzj58z7jajl3m0wqd4ii74w")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cl-base64" ,sbcl-cl-base64) + ("cl-base58" ,sbcl-cl-base58))) + ;; Load order matters for tests, both for file reading and evaluation. + (arguments + `(#:asd-systems '("bit-smasher-test" "bit-smasher") + #:asd-files '("bit-smasher.asd" "bit-smasher-test.asd"))) + (home-page "https://github.com/thephoeron/bit-smasher/") + (synopsis "Handle bit vectors, bit vector arithmetic, and type conversions") + (description + "Utility library for handling bit vectors, bit vector arithmetic, and +universal integer type conversions between bit-vectors, byte-vectors, octals, +decimals, and hexadecimal notation.") + (license license:expat)))) + +(define-public cl-bit-smasher + (sbcl-package->cl-source-package sbcl-bit-smasher)) + +(define-public ecl-bit-smasher + (sbcl-package->ecl-package sbcl-bit-smasher)) + +(define-public sbcl-overlord + ;; No release. + (let ((commit "a8f37b321a8aae1652fc50b78e74e57c771cc763")) + (package + (name "sbcl-overlord") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ruricolist/overlord/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1maqm53yhlhaa3cka8xcc4sq24ifrr4y3y0s5dyyn682xsh14hb4")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("babel" ,sbcl-babel) + ("bit-smasher" ,sbcl-bit-smasher) + ("bordeaux-threads" ,sbcl-bordeaux-threads) + ("cl-strftime" ,sbcl-cl-strftime) + ("cmd" ,sbcl-cmd) + ("drakma" ,sbcl-drakma) + ("exit-hooks" ,sbcl-exit-hooks) + ("fset" ,sbcl-fset) + ("local-time" ,sbcl-local-time) + ("lparallel" ,sbcl-lparallel) + ("md5" ,sbcl-md5) + ("murmurhash" ,sbcl-cl-murmurhash) + ("named-readtables" ,sbcl-named-readtables) + ("ppcre" ,sbcl-cl-ppcre) + ("serapeum" ,sbcl-serapeum) + ("trivia" ,sbcl-trivia) + ("trivial-file-size" ,sbcl-trivial-file-size))) + (propagated-inputs + `(("quickproject" ,sbcl-quickproject))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (arguments + `(#:asd-files '("overlord.asd") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'include-overlord/net + (lambda _ + (substitute* "all.lisp" + (("\\(:import-from :overlord/kernel :nproc\\)") + (string-append + "(:import-from :overlord/kernel :nproc)" + "\n" + "(:import-from :overlord/net)"))) + #t))))) + (home-page "https://github.com/ruricolist/overlord") + (synopsis "Build system in Common Lisp") + (description + "Overlord is a build system in Common Lisp. It is a real build system, +with all the modern features: rules with multiple outputs, parallel builds, +immunity to clock issues, and dynamic dependencies. + +But Overlord is more than another build system. Overlord is a uniform +approach to dependencies inside or outside of a Lisp image. Overlord is to +Make what Lisp macros are to C macros. + +Overlord is designed to be used from the Lisp REPL. A command line interface +is available in a separate repository. See +@url{https://github.com/ruricolist/overlord-cli}.") + (license license:expat)))) + +(define-public cl-overlord + (sbcl-package->cl-source-package sbcl-overlord)) + +;; FIXME: Broken on ECL? https://github.com/ruricolist/overlord/issues/25 +;; (define-public ecl-overlord +;; (sbcl-package->ecl-package sbcl-overlord)) + +(define-public sbcl-xpath + ;; No release. + (let ((commit "d364da693a534e23bd5eb3a85420e9c25e6c75b3")) + (package + (name "sbcl-xpath") + (version (git-version "0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sharplispers/xpath/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1fb03fgnzrvh22lw1jdg04pmyja5fib5n42rzwp5mhr829yvxkvp")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cxml" ,sbcl-cxml) + ("parse-number" ,sbcl-parse-number) + ("cl-ppcre" ,sbcl-cl-ppcre) + ("yacc" ,sbcl-cl-yacc))) + (home-page "https://github.com/sharplispers/xpath/") + (synopsis "Implementation of the XML Path Language (XPath) Version 1.0") + (description + "This library is an implementation of the XML Path Language (XPath) +Version 1.0.") + (license license:bsd-2)))) + +;; According to +;; https://github.com/sharplispers/xpath/blob/master/doc/index.xml ECL is not +;; supported. +(define-public cl-xpath + (sbcl-package->cl-source-package sbcl-xpath)) + +(define-public sbcl-fxml + ;; No release. + (let ((commit "a0e73bb48ef03adea94a55986cc27f522074c8e1")) + (package + (name "sbcl-fxml") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ruricolist/fxml/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1vxdb1cjjqi986f72bggnw1s4yzv12g4li7vn4y49b6lphshr8lm")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("babel" ,sbcl-babel) + ("named-readtables" ,sbcl-named-readtables) + ("serapeum" ,sbcl-serapeum) + ("quri" ,sbcl-quri) + ("flexi-streams" ,sbcl-flexi-streams) + ("split-sequence" ,sbcl-split-sequence) + ("alexandria" ,sbcl-alexandria) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams))) + (native-inputs + `(("fiveam" ,sbcl-fiveam) + ("cxml" ,sbcl-cxml) + ("cxml-rng" ,sbcl-cxml-rng) + ("xpath" ,sbcl-xpath))) + (home-page "https://github.com/ruricolist/fxml") + (synopsis "XML parser and serializer in Common Lisp") + (description + "FXML is a secure-by-default, error-recovering XML parser and serializer. +It is a fork of CXML. + +You should use FXML instead of CXML if: +@itemize +@item You are parsing potentially ill-formed XML. +@item You are parsing potentially malicious XML. +@item You need to use Klacks with namespaces. +@end itemize + +FXML’s API is very close to CXML's, and for the most part you can refer to the +CXML documentation for usage.") + (license license:llgpl)))) + +(define-public cl-fxml + (sbcl-package->cl-source-package sbcl-fxml)) + +(define-public sbcl-vernacular + ;; No release. + (let ((commit "79be179e9ada423b3ec41d2a1ea6f6e0266ed21f")) + (package + (name "sbcl-vernacular") + (version (git-version "0.8.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ruricolist/vernacular/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "19vzn28hw4is4sgmvzqin18ds89s0pai21vcm0ky10vmfv6wg745")) + (modules '((guix build utils))) + (snippet + '(begin + ;; The demo depends on cl-js, which we don't have at this point. + (delete-file-recursively "demo") + #t)))) + (build-system asdf-build-system/sbcl) + (inputs + `(("overlord" ,sbcl-overlord) + ("trivial-macroexpand-all" ,sbcl-trivial-macroexpand-all) + ("local-time" ,sbcl-local-time) + ("parse-js" ,sbcl-parse-js) + ("trivia" ,sbcl-trivia) + ("trivial-garbage" ,sbcl-trivial-garbage) + ("named-readtables" ,sbcl-named-readtables) + ("alexandria" ,sbcl-alexandria) + ("serapeum" ,sbcl-serapeum) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams))) + (arguments + ;; Circular dependency: Tests depend on core-lisp + ;; (http://github.com/ruricolist/core-lisp) which depends on + ;; Vernacular. + '(#:tests? #f)) + (home-page "https://github.com/ruricolist/vernacular") + (synopsis "Module system for languages that compile to Common Lisp") + (description + "Vernacular is a build and module system for languages that compile to +Common Lisp. It allows languages to compile to Lisp while remaining part of +the Common Lisp ecosystem. Vernacular languages interoperate with Common Lisp +and one another. + +Vernacular handles locating files, compiling files into FASLs, tracking +dependencies and rebuilding, and export and import between your new language, +Lisp, and any other language Vernacular supports. + +Vernacular builds on Overlord and is inspired by Racket.") + (license license:expat)))) + +(define-public cl-vernacular + (sbcl-package->cl-source-package sbcl-vernacular)) diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm index 16fe6fc24c..9b2506fe54 100644 --- a/gnu/packages/llvm.scm +++ b/gnu/packages/llvm.scm @@ -477,6 +477,7 @@ output), and Binutils.") (inputs `(("clang" ,clang) ("ld-wrapper" ,(car (assoc-ref (%final-inputs) "ld-wrapper"))) ("binutils" ,binutils) + ("libomp" ,libomp) ;used when linking with '-fopenmp' ("libc" ,glibc) ("libc-debug" ,glibc "debug") ("libc-static" ,glibc "static"))))) diff --git a/gnu/packages/logging.scm b/gnu/packages/logging.scm index 34dc124cb6..cc2ee9b4dc 100644 --- a/gnu/packages/logging.scm +++ b/gnu/packages/logging.scm @@ -181,7 +181,7 @@ output in multiple windows in a terminal.") (define-public spdlog (package (name "spdlog") - (version "1.8.5") + (version "1.9.2") (source (origin (method git-fetch) @@ -190,7 +190,7 @@ output in multiple windows in a terminal.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "179krvg5sad6dviqpcjwg6czzknnilqszrg1d0fgp12h6sy66vqg")))) + (base32 "1img03ka63hf3sb62v5f02ax5jc9mlpz5cijr38xxzymvcg1s98r")))) (build-system cmake-build-system) ;; TODO run benchmark. Currently not possible, as adding ;; (gnu packages benchmark) forms a dependency cycle diff --git a/gnu/packages/lua.scm b/gnu/packages/lua.scm index 7cadba6392..22dc7c6bc4 100644 --- a/gnu/packages/lua.scm +++ b/gnu/packages/lua.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2020 Simon South <simon@simonsouth.net> ;;; Copyright © 2020 Paul A. Patience <paul@apatience.com> ;;; Copyright © 2021 Vinícius dos Santos Oliveira <vini.ipsmaker@gmail.com> +;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1140,7 +1141,7 @@ shell command executions.") (inputs `(("boost" ,boost) ("boost-static" ,boost-static) - ("fmt" ,fmt) + ("fmt" ,fmt-7) ;; LuaJIT has a 2GiB addressing limit[1] that has been fixed on OpenResty ;; fork. Emilua is severely affected by this limit, so the upstream package ;; is avoided. Emilua also depends on the -DLUAJIT_ENABLE_LUA52COMPAT @@ -1169,7 +1170,7 @@ enabled.") (define-public fennel (package (name "fennel") - (version "0.9.1") + (version "1.0.0") (source (origin (method git-fetch) (uri (git-reference @@ -1178,11 +1179,7 @@ enabled.") (file-name (git-file-name name version)) (sha256 (base32 - "07qgycf5cxm9zcc4fgpgvplg95ndavh3ynpdjpvzkikzbnyj7xia")) - (modules '((guix build utils))) - (snippet - '(begin - (delete-file "fennelview.lua") #t)))) + "0d4rpf0f2aqxlca3kxrbhjjhf1knhiz8ccwlx8xid05mc16la70y")))) (build-system gnu-build-system) (arguments '(#:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))) @@ -1191,28 +1188,14 @@ enabled.") #:phases (modify-phases %standard-phases (delete 'configure) - (add-before 'build 'patch-lua-calls - (lambda* (#:key inputs #:allow-other-keys) - (let ((lua (search-input-file inputs "/bin/lua"))) - (setenv "LUA" lua) - (substitute* "old/launcher.lua" - (("/usr/bin/env lua") lua)) - #t))) (add-after 'build 'patch-fennel (lambda* (#:key inputs #:allow-other-keys) (substitute* "fennel" (("/usr/bin/env .*lua") - (search-input-file inputs "/bin/lua"))) - #t)) + (search-input-file inputs "/bin/lua"))))) (delete 'check) (add-after 'install 'check - (assoc-ref %standard-phases 'check)) - (add-after 'install 'install-manpage - (lambda* (#:key outputs #:allow-other-keys) - (install-file "fennel.1" - (string-append (assoc-ref outputs "out") - "/share/man/man1")) - #t))))) + (assoc-ref %standard-phases 'check))))) (inputs `(("lua" ,lua))) (home-page "https://fennel-lang.org/") (synopsis "Lisp that compiles to Lua") diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 88ce23c410..324d22a12f 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -2750,7 +2750,7 @@ TensorFlow.js, PyTorch, and MediaPipe.") (define-public python-pytorch (package (name "python-pytorch") - (version "1.9.0") + (version "1.10.0") (source (origin (method git-fetch) (uri (git-reference @@ -2760,7 +2760,7 @@ TensorFlow.js, PyTorch, and MediaPipe.") (file-name (git-file-name name version)) (sha256 (base32 - "0cznsh68hwk5761gv7iijb4g6jgjpvs3bbixwpzzmkbkbn2q96c1")) + "1ihsjw48qqbikmhxxn17bcdvk2zsjabvkq61q6pvj7dzvrdpkb60")) (patches (search-patches "python-pytorch-system-libraries.patch" "python-pytorch-runpath.patch")) (modules '((guix build utils))) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index a40e5e5132..c92ec14c04 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -43,6 +43,7 @@ ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> ;;; Copyright © 2021 Benoit Joly <benoit@benoitj.ca> +;;; Copyright © 2021 Morgan Smith <Morgan.J.Smith@outlook.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -435,9 +436,6 @@ messages) using IDLE. Implemented in Go.") `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs mailutils)))))) -(define-public guile3.0-mailutils - (deprecated-package "guile3.0-mailutils" mailutils)) - (define-public nullmailer (package (name "nullmailer") @@ -1169,15 +1167,15 @@ security functionality including PGP, S/MIME, SSH, and SSL.") (define-public mu (package (name "mu") - (version "1.6.9") + (version "1.6.10") (source (origin (method url-fetch) (uri (string-append "https://github.com/djcb/mu/releases/" - "download/" version "-signed/" + "download/" version "/" "mu-" version ".tar.xz")) (sha256 (base32 - "0n5gvdz6vn6y69f5gx0gndjdl328qjbvi2q048qynhk99w5476cd")))) + "1dh0x4lqnjflb0k8fybr5clqjxv35scf055g1590pr5znam29hhb")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -1272,6 +1270,10 @@ attachments, create new maildirs, and so on.") (substitute* "tests/commands/test_global.py" (("def test_no_spawn_no_stdin_attached") "def _test_no_spawn_no_stdin_attached")) + ;; FIXME: Investigate why this test hangs. + (substitute* "tests/db/test_manager.py" + (("def test_save_named_query") + "def _test_save_named_query")) #t))))) (native-inputs `(("procps" ,procps) @@ -4486,6 +4488,41 @@ which can convert the contacts to @code{.ldif} format for import into LDAP databases, and other tools to process Outlook email archives.") (license license:gpl2+))) +(define-public neatmail + (package + (name "neatmail") + (version "02") + (source + (origin + (method git-fetch) + (uri + (git-reference + (url "https://github.com/aligrudi/neatmail") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00d453d57d3v6ja2gpmjd8vch804c72g38pc1nr5shmz3hkgd52d")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;no tests + #:make-flags `((string-append "CC=" ,(cc-for-target))) + #:phases + (modify-phases %standard-phases + (delete 'configure) ;no configure script + (replace 'install ;no install target in the Makefile + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin"))) + (rename-file "mail" "neatmail") + (install-file "neatmail" bin))))))) + (home-page "https://litcave.rudi.ir/") + (synopsis "Text-mode mail client") + (description + "@command{neatmail} is a noninteractive mail client. It generates +a listing of the messages in a mailbox in mbox format and executes a list of +ex-like commands on it.") + (license license:isc))) + (define-public crm114 (package (name "crm114") @@ -4563,3 +4600,41 @@ regexes, approximate regexes, a Hidden Markov Model, Orthogonal Sparse Bigrams, WINNOW, Correlation, KNN/Hyperspace, or Bit Entropy (or by other means--it's all programmable).") (license license:gpl3))) + +(define-public rss2email + (package + (name "rss2email") + (version "3.13.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/rss2email/rss2email") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0g1yr3v3ibdh2jqil64fbdbplx5m2yzxr893fqfkwcc5c7fbwl4d")))) + (build-system python-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (with-directory-excursion "test" + ;; Skip networking tests + (substitute* "test.py" + (("( *)class (:?TestSend|TestFetch).*" match indent) + (string-append indent "@unittest.skip(\"Networking stuff skipped\")\n" + indent match))) + (invoke "python" "-m" "unittest")))))))) + (inputs + `(("python-feedparser" ,python-feedparser) + ("python-html2text" ,python-html2text))) + (home-page "https://github.com/rss2email/rss2email") + (synopsis "Converts RSS/Atom newsfeeds to email") + (description "The RSS2email program (@command{r2e}) fetches RSS/Atom news +feeds, converts them into emails, and sends them.") + ;; GPL version 2 or 3. NOT 2+. + (license (list license:gpl2 + license:gpl3)))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 42e59fae7a..3cdb7b20de 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -6203,6 +6203,31 @@ easily be incorporated into existing simulation codes.") ,%openmpi-setup))))) (synopsis "SUNDIALS with OpenMPI support"))) +(define-public sundials-julia + (package + (inherit sundials) + (name "sundials-julia") + (version "5.2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/LLNL/sundials") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0nx4sqhmi126m14myzm7syv2053harav9snl0a247wnkcgs5rxrv")))) + (inputs + `(("lapack" ,lapack) + ,@(package-inputs sundials))) + (arguments + (substitute-keyword-arguments (package-arguments sundials) + ((#:configure-flags flags '()) + `(cons* "-DLAPACK_ENABLE:BOOL=ON" + ,flags)))) + (synopsis "SUNDIALS with lapack support as required by julia-sundials-jll"))) + (define-public combinatorial-blas (package (name "combinatorial-blas") diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index f8cfc8b2eb..c2ebcf7d18 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -542,6 +542,82 @@ messaging environments. It can be used with messaging software to provide end-to-end encryption.") (license license:gpl3+))) +(define-public axc + (package + (name "axc") + (version "0.3.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/gkdr/axc") + (commit (string-append "v" version)))) + (modules '((guix build utils))) + (snippet + `(begin + ;; Submodules + (delete-file-recursively "lib"))) + (file-name + (git-file-name name version)) + (sha256 + (base32 "05sv7l6lk0xk4wb2bspc2sdpygrb1f0szzi82a1kyfm0fjz887b3")))) + (build-system cmake-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (setenv "CC" "gcc") + (setenv "PREFIX" out))))) + #:parallel-tests? #f)) + (native-inputs `(("cmocka" ,cmocka) + ("pkg-config" ,pkg-config))) + (inputs `(("glib" ,glib) + ("libgcrypt" ,libgcrypt) + ("libsignal-protocol-c" ,libsignal-protocol-c) + ("sqlite" ,sqlite))) + (synopsis "Client library for libsignal-protocol-c") + (description "This is a client library for @code{libsignal-protocol-c}. +It implements the necessary interfaces using @code{libgcrypt} and +@code{sqlite}.") + (home-page "https://github.com/gkdr/axc") + (license license:gpl3))) ;GPLv3-only, per license headers + +(define-public libomemo + (package + (name "libomemo") + (version "0.7.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/gkdr/libomemo") + (commit (string-append "v" version)))) + (file-name + (git-file-name name version)) + (sha256 + (base32 "1q3vyj8zk3vm0a4v6w8qya5dhk2yw04bga8799a0zl6907nf122k")))) + (build-system cmake-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (setenv "CC" "gcc") + (setenv "PREFIX" out))))) + #:parallel-tests? #f)) + (native-inputs `(("cmocka" ,cmocka) + ("pkg-config" ,pkg-config))) + (inputs `(("glib" ,glib) + ("libgcrypt" ,libgcrypt) + ("minixml" ,minixml) + ("sqlite" ,sqlite))) + (synopsis "OMEMO C library") + (description "This library implements @acronym{OMEMO, OMEMO Multi-End +Message and Object Encryption} of XMPP (XEP-0384) in C.") + (home-page "https://github.com/gkdr/libomemo") + (license license:expat))) + (define-public bitlbee (package (name "bitlbee") @@ -2048,7 +2124,7 @@ are both supported).") (define-public profanity (package (name "profanity") - (version "0.10.0") + (version "0.11.1") (source (origin (method url-fetch) @@ -2057,7 +2133,7 @@ are both supported).") version ".tar.gz")) (sha256 (base32 - "137z77514fgj2dk13d12g4jrn6gs5k85nwrk1r1kiv7rj0jy61aa")))) + "0idx0a5g077a57q462w01m0h8i4vyvabzlj87p8527wpqbv4s6vg")))) (build-system glib-or-gtk-build-system) (arguments `(#:configure-flags @@ -2609,6 +2685,58 @@ support for high performance Telegram Bot creation.") (home-page "https://source.puri.sm/Librem5/purple-mm-sms") (license license:gpl2+))) +(define-public purple-lurch + (package + (name "purple-lurch") + (version "0.7.0") + (source + (origin + (method git-fetch) + (uri (git-reference (url "https://github.com/gkdr/lurch") + (commit (string-append "v" version)))) + (modules '((guix build utils))) + (snippet + `(begin + ;; Submodules + (delete-file-recursively "lib"))) + (file-name + (git-file-name name version)) + (sha256 + (base32 "1ipd9gwh04wbqv6c10yxi02lc2yjsr02hwjycgxhl4r9x8b33psd")))) + (build-system cmake-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "Makefile" + (("^PURPLE_PLUGIN_DIR = .*") + (string-append "PURPLE_PLUGIN_DIR = " out + "/lib/purple-2\n"))) + (setenv "CC" "gcc"))))) + #:parallel-tests? #f)) + (native-inputs `(("cmocka" ,cmocka) + ("pkg-config" ,pkg-config))) + (inputs `(("axc" ,axc) + ("glib" ,glib) + ("libgcrypt" ,libgcrypt) + ("libomemo" ,libomemo) + ("libsignal-protocol-c" ,libsignal-protocol-c) + ("libxml2" ,libxml2) + ("minixml" ,minixml) + ("pidgin" ,pidgin) + ("sqlite" ,sqlite))) + (synopsis "OMEMO Encryption for libpurple") + (description "Purple-lurch plugin adds end-to-end encryption support +through the Double Ratchet (Axolotl) algorithm, to @code{libpurple} +applications using @acronym{XMPP, Extensible Messaging and Presence Protocol}, +through its standard XEP-0384: @acronym{OMEMO, OMEMO Multi-End Message and +Object Encryption} Encryption. It provides confidentiality, (weak) forward +secrecy, break-in recovery, authentication, integrity, deniability, and +asynchronicity.") + (home-page "https://github.com/gkdr/lurch") + (license license:gpl3+))) + (define-public chatty (package (name "chatty") diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm index c8316c5212..7c4c22836e 100644 --- a/gnu/packages/monitoring.scm +++ b/gnu/packages/monitoring.scm @@ -452,9 +452,6 @@ two things: store numeric time-series data, and render graphs of this data on demand.") (license license:asl2.0))) -(define-public python2-graphite-web - (deprecated-package "python2-graphite-web" graphite-web)) - (define-public python-prometheus-client (package (name "python-prometheus-client") diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm index e6c1e68745..b9da295567 100644 --- a/gnu/packages/mpd.scm +++ b/gnu/packages/mpd.scm @@ -42,8 +42,10 @@ #:use-module (gnu packages autotools) #:use-module (gnu packages avahi) #:use-module (gnu packages base) + #:use-module (gnu packages build-tools) ;meson-next #:use-module (gnu packages boost) #:use-module (gnu packages cdrom) + #:use-module (gnu packages cmake) ;for MPD #:use-module (gnu packages gettext) #:use-module (gnu packages gnome) #:use-module (gnu packages gnupg) @@ -61,6 +63,7 @@ #:use-module (gnu packages ncurses) #:use-module (gnu packages pcre) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages pretty-print) #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) #:use-module (gnu packages pulseaudio) @@ -105,7 +108,7 @@ interfacing MPD in the C, C++ & Objective C languages.") (define-public mpd (package (name "mpd") - (version "0.22.11") + (version "0.23.4") (source (origin (method url-fetch) (uri @@ -114,7 +117,7 @@ interfacing MPD in the C, C++ & Objective C languages.") "/mpd-" version ".tar.xz")) (sha256 (base32 - "1850ii8vnv5l8b561fai4q2mcrnym94mvlrxiy48fvpfm8s7ygql")))) + "0m67wibxc6n6438h2va59n51wwwbwhbdj9635cnpc3wqvlq9sd9g")))) (build-system meson-build-system) (arguments `(#:configure-flags '("-Ddocumentation=enabled"))) @@ -125,6 +128,7 @@ interfacing MPD in the C, C++ & Objective C languages.") ("curl" ,curl) ("ffmpeg" ,ffmpeg) ("flac" ,flac) + ("fmt" ,fmt) ("glib" ,glib) ("icu4c" ,icu4c) ;; The LAME decoder comes from FFmpeg, but is added here so that @@ -139,7 +143,8 @@ interfacing MPD in the C, C++ & Objective C languages.") ("pulseaudio" ,pulseaudio) ("sqlite" ,sqlite) ("zlib" ,zlib))) - (native-inputs `(("pkg-config" ,pkg-config) + (native-inputs `(("cmake" ,cmake) + ("pkg-config" ,pkg-config) ("python-sphinx" ,python-sphinx))) ;; Missing optional inputs: ;; libyajl @@ -167,6 +172,7 @@ server-side application for playing music. Through plugins and libraries it can play a variety of sound files while being controlled by its network protocol.") (home-page "https://www.musicpd.org/") + (properties `((release-monitoring-url . "https://musicpd.org"))) (license license:gpl2))) (define-public mpd-mpc diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 8d1836c44e..9ad2842e3e 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1524,6 +1524,39 @@ Guile.") ;; more than an hour of silence, so double the max silent time. (properties `((max-silent-time . 7200))))) +(define-public music21 + (package + (name "music21") + (version "7.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "music21" version)) + (sha256 + (base32 "17v2id8qm99xqymqsdczq173fmbdha4w109ahh8j1d9l5a7mqc86")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; See: https://github.com/cuthbertLab/music21/issues/1164 + (invoke "python" "-m" "music21.stream.tests"))))))) + (propagated-inputs + `(("python-chardet" ,python-chardet) + ("python-joblib" ,python-joblib) + ("python-more-itertools" ,python-more-itertools) + ("python-webcolors" ,python-webcolors))) + (home-page "https://web.mit.edu/music21/") + (synopsis "Toolkit for Computational Musicology") + (description + "Music21 is a set of tools for helping scholars and other active +listeners answer questions about music quickly and simply.") + ;; Software is dual-licensed. + (license (list license:bsd-3 license:lgpl3+)))) + (define-public abjad (package (name "abjad") diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index d9b5705186..1d6a12bc55 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -948,7 +948,7 @@ or server shell scripts with network connections.") (define-public mbuffer (package (name "mbuffer") - (version "20210328") + (version "20211018") (source (origin (method url-fetch) (uri (string-append @@ -956,8 +956,10 @@ or server shell scripts with network connections.") version ".tgz")) (sha256 (base32 - "0pfw9xw4ph18yss07fl6w8fbqiwy1w9r1knzw5gsb4c993cbidai")))) + "1qxnbpyly00kml3sjan9iqg6pqacsi3yqq66x25w455cwkjc2h72")))) (build-system gnu-build-system) + (native-inputs + `(("which" ,which))) (inputs `(("openssl" ,openssl))) (home-page "http://www.maier-komor.de/mbuffer.html") (synopsis @@ -4080,19 +4082,20 @@ stamps.") (define-public nbd (package (name "nbd") - (version "3.21") + (version "3.22") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/nbd/nbd/" version "/nbd-" version ".tar.xz")) (sha256 - (base32 "1ydylvvayi4w2d08flji9q03sl7y8hn0c26vsay3nwwikprqls77")))) + (base32 "1ljx6vb3lja5p0lr28vmjp27n9d6krlvq49bhqbcm2ns8vxd1vh6")))) (build-system gnu-build-system) (inputs `(("glib" ,glib))) (native-inputs - `(("pkg-config" ,pkg-config) + `(("bison" ,bison) + ("pkg-config" ,pkg-config) ("which" ,which))) (home-page "https://nbd.sourceforge.io/") (synopsis "NBD client and server") diff --git a/gnu/packages/node.scm b/gnu/packages/node.scm index 35fee2158d..69b290c7d5 100644 --- a/gnu/packages/node.scm +++ b/gnu/packages/node.scm @@ -273,8 +273,9 @@ perfect for data-intensive real-time applications that run across distributed devices.") (home-page "https://nodejs.org/") (license license:expat) - (properties '((max-silent-time . 7200) ;2h, needed on ARM - (timeout . 21600))))) ;6h + (properties '((max-silent-time . 7200) ;2h, needed on ARM + (timeout . 21600) ;6h + (cpe-name . "node.js"))))) ;; This should be the latest version of node that still builds without ;; depending on llhttp. @@ -572,7 +573,7 @@ parser definition into a C output.") (define-public llhttp-bootstrap (package (name "llhttp") - (version "2.1.3") + (version "2.1.4") (source (origin (method git-fetch) (uri (git-reference @@ -581,7 +582,7 @@ parser definition into a C output.") (file-name (git-file-name name version)) (sha256 (base32 - "0pqj7kyyzr1zs4h9yzn5rdxnxspm3wqgsv00765dd42fszlmrmk8")) + "115mwyds9655p76lhglxg2blc1ksgrix6zhigaxnc2q6syy3pa6x")) (patches (search-patches "llhttp-bootstrap-CVE-2020-8287.patch")) (modules '((guix build utils))) (snippet @@ -642,14 +643,14 @@ source files.") (define-public node-lts (package (inherit node) - (version "14.16.0") + (version "14.18.1") (source (origin (method url-fetch) (uri (string-append "https://nodejs.org/dist/v" version "/node-v" version ".tar.xz")) (sha256 (base32 - "19nz2mhmn6ikahxqyna1dn25pb5v3z9vsz9zb2flb6zp2yk4hxjf")) + "1vc9rypkgr5i5y946jnyr9jjpydxvm74p1s17rg2zayzvlddg89z")) (modules '((guix build utils))) (snippet `(begin @@ -777,6 +778,9 @@ source files.") '("test/parallel/test-dns.js" "test/parallel/test-dns-lookupService-promises.js")) + ;; These tests require networking. + (delete-file "test/parallel/test-https-agent-unref-socket.js") + ;; FIXME: This test fails randomly: ;; https://github.com/nodejs/node/issues/31213 (delete-file "test/parallel/test-net-listen-after-destroying-stdin.js") @@ -815,7 +819,7 @@ source files.") "deps/llhttp/include/llhttp.h")))))))) (native-inputs `(;; Runtime dependencies for binaries used as a bootstrap. - ("c-ares" ,c-ares) + ("c-ares" ,c-ares-for-node) ("brotli" ,brotli) ("icu4c" ,icu4c-67) ("libuv" ,libuv-for-node) @@ -831,7 +835,7 @@ source files.") (inputs `(("bash" ,bash) ("coreutils" ,coreutils) - ("c-ares" ,c-ares) + ("c-ares" ,c-ares-for-node) ("icu4c" ,icu4c-67) ("libuv" ,libuv-for-node) ("llhttp" ,llhttp-bootstrap) diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm index 9408697ed8..131bf22a4b 100644 --- a/gnu/packages/ocaml.scm +++ b/gnu/packages/ocaml.scm @@ -2269,6 +2269,7 @@ immutability.") ("ocaml-stdlib-shims" ,ocaml-stdlib-shims) ("ocaml-uuidm" ,ocaml-uuidm) ("ocaml-uutf" ,ocaml-uutf))) + (properties `((ocaml4.07-variant . ,(delay ocaml4.07-alcotest)))) (home-page "https://github.com/mirage/alcotest") (synopsis "Lightweight OCaml test framework") (description "Alcotest exposes simple interface to perform unit tests. It @@ -2279,6 +2280,22 @@ displayed at the end of the run (with the full logs ready to inspect), with a simple (yet expressive) query language to select the tests to run.") (license license:isc))) +(define-public ocaml4.07-alcotest + (package-with-ocaml4.07 + (package + (inherit ocaml-alcotest) + (version "1.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mirage/alcotest") + (commit version))) + (file-name (git-file-name "ocaml-alcotest" version)) + (sha256 + (base32 + "1frwi185z4aadmaf0vp8xk5227nyg7nmh28ijj5l7ncjr5slvhz8")))) + (properties '())))) + (define-public ocaml-ppx-tools (package (name "ocaml-ppx-tools") @@ -2403,8 +2420,7 @@ for mapping files in memory. This function is the same as the (arguments `(#:package "lwt")) (native-inputs - `(("ocaml-bisect-ppx" ,ocaml-bisect-ppx) - ("ocaml-cppo" ,ocaml-cppo) + `(("ocaml-cppo" ,ocaml-cppo) ("pkg-config" ,pkg-config))) (inputs `(("glib" ,glib))) @@ -3354,6 +3370,7 @@ standard iterator type starting from 4.07.") `(("ocaml-seq" ,ocaml-seq))) (native-inputs `(("ounit" ,ocaml-ounit))) + (properties `((ocaml4.07-variant . ,(delay ocaml4.07-re)))) (home-page "https://github.com/ocaml/ocaml-re/") (synopsis "Regular expression library for OCaml") (description "Pure OCaml regular expressions with: @@ -3366,6 +3383,19 @@ standard iterator type starting from 4.07.") @end enumerate") (license license:expat))) +(define-public ocaml4.07-re + (package-with-ocaml4.07 + (package + (inherit ocaml-re) + (arguments + `(#:test-target "." + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-dune-version + (lambda _ + (delete-file "dune-project")))))) + (properties '())))) + (define-public ocaml-ocplib-endian (package (name "ocaml-ocplib-endian") @@ -6584,7 +6614,8 @@ combinators.") (arguments ;; Tests require ocamlformat which would lead to circular dependencies '(#:tests? #f)) - (properties '((upstream-name . "bisect_ppx"))) + (properties `((upstream-name . "bisect_ppx") + (ocaml4.07-variant . ,(delay ocaml4.07-bisect-ppx)))) (home-page "https://github.com/aantron/bisect_ppx") (synopsis "Code coverage for OCaml") (description "Bisect_ppx helps you test thoroughly. It is a small @@ -6596,6 +6627,33 @@ Usage is simple - add package bisect_ppx when building tests, run your tests, then run the Bisect_ppx report tool on the generated visitation files.") (license license:mpl2.0))) +(define-public ocaml4.07-bisect-ppx + (package-with-ocaml4.07 + (package + (inherit ocaml-bisect-ppx) + (version "2.4.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aantron/bisect_ppx") + (commit version))) + (file-name (git-file-name "ocaml-bisect-ppx" version)) + (sha256 + (base32 + "1njs8xc108rrpx5am5zhhcn6vjva7rsphm8034qp5lgyvnhfgh7q")))) + (propagated-inputs + `(("ocaml-migrate-parsetree" ,ocaml-migrate-parsetree) + ("ocaml-ppx-tools-versioned" ,ocaml-ppx-tools-versioned) + ,@(package-propagated-inputs ocaml-bisect-ppx))) + (native-inputs + `(("ocaml-ounit2" ,ocaml-ounit2))) + (arguments + `(#:test-target "." + ;; tests require git and network + #:tests? #f)) + (properties '((upstream-name . "bisect_ppx")))))) + (define-public ocaml-odoc (package (name "ocaml-odoc") @@ -6682,6 +6740,12 @@ language understood by ocamldoc.") (file-name (git-file-name name version)) (sha256 (base32 "0z2nisg1vb5xlk41hqw8drvj90v52wli7zvnih6a844cg6xsvvj2")))) + (inputs + `(("ocaml-alcotest" ,ocaml-alcotest) + ("ocaml-markup" ,ocaml-markup) + ("ocaml-sexplib" ,ocaml-sexplib) + ("ocaml-re" ,ocaml-re) + ("ocaml-uutf" ,ocaml-uutf))) (properties '())))) (define-public ocaml4.07-fftw3 diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index c7547264e9..ead43c21ce 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -146,8 +146,8 @@ ;; Note: the 'update-guix-package.scm' script expects this definition to ;; start precisely like this. (let ((version "1.3.0") - (commit "014f1b607f1d88a8e733017afaca006545b7d99b") - (revision 11)) + (commit "9bbbac6783bcdace17d967e85c8ae8d14cbf1ef9") + (revision 12)) (package (name "guix") @@ -163,7 +163,7 @@ (commit commit))) (sha256 (base32 - "0mmq0ypkxj6dc1r9j1mdgih87h6fc0mk05hp481cjp8shdc1w6gw")) + "1p0my0gfshdhm1dpqf6j68iipnigmpb23l8p81kwpw5w50x0hfda")) (file-name (string-append "guix-" version "-checkout")))) (build-system gnu-build-system) (arguments @@ -532,9 +532,6 @@ the Nix package manager.") (invoke "make" "install-binPROGRAMS"))) (delete 'wrap-program))))))) -(define-public guile3.0-guix - (deprecated-package "guile3.0-guix" guix)) - (define-public guix-minimal ;; A version of Guix which is built with the minimal set of dependencies, as ;; outlined in the README "Requirements" section. Intended as a CI job, so @@ -1042,9 +1039,6 @@ it easy to create independent environments even for C libraries. Conda is written entirely in Python.") (license license:bsd-3))) -(define-public python-conda - (deprecated-package "python-conda" conda)) - (define-public conan (package (name "conan") @@ -1251,8 +1245,8 @@ environments.") (license (list license:gpl3+ license:agpl3+ license:silofl1.1)))) (define-public guix-build-coordinator - (let ((commit "a4d0ec6bc564bbe98d3e6c03be41de16edbda928") - (revision "35")) + (let ((commit "200ffe795bd36052b64f7868c71a92925ee7beca") + (revision "37")) (package (name "guix-build-coordinator") (version (git-version "0" revision commit)) @@ -1263,7 +1257,7 @@ environments.") (commit commit))) (sha256 (base32 - "0qa7qkskp9xzhyl0fgbm98f8apy8cn2yc9gpxhw0dfc9bkbs1pb9")) + "09j67zdx5h6ic2yvzn1vvhmwlsj7kb06s765yjnvpnsb228ja96s")) (file-name (string-append name "-" version "-checkout")))) (build-system gnu-build-system) (arguments diff --git a/gnu/packages/patches/aws-c-auth-cmake-prefix.patch b/gnu/packages/patches/aws-c-auth-cmake-prefix.patch deleted file mode 100644 index da3e4eb4a5..0000000000 --- a/gnu/packages/patches/aws-c-auth-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -6,6 +6,10 @@ if (POLICY CMP0069) - cmake_policy(SET CMP0069 NEW) # Enable LTO/IPO if available in the compiler, see AwsCFlags - endif() - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-auth-disable-networking-tests.patch b/gnu/packages/patches/aws-c-auth-disable-networking-tests.patch deleted file mode 100644 index 905247f528..0000000000 --- a/gnu/packages/patches/aws-c-auth-disable-networking-tests.patch +++ /dev/null @@ -1,64 +0,0 @@ ---- a/tests/CMakeLists.txt -+++ b/tests/CMakeLists.txt -@@ -19,8 +19,8 @@ add_test_case(profile_credentials_provider_environment_test) - add_test_case(credentials_provider_first_in_chain_test) - add_test_case(credentials_provider_second_in_chain_test) - add_test_case(credentials_provider_null_chain_test) --add_test_case(credentials_provider_default_basic_test) --add_test_case(credentials_provider_default_manual_tls_test) -+#add_test_case(credentials_provider_default_basic_test) -+#add_test_case(credentials_provider_default_manual_tls_test) - add_test_case(credentials_provider_imds_new_destroy) - add_test_case(credentials_provider_imds_connect_failure) - add_test_case(credentials_provider_imds_token_request_failure) -@@ -58,28 +58,28 @@ add_test_case(credentials_provider_x509_basic_success) - add_test_case(credentials_provider_x509_success_multi_part_doc) - add_test_case(credentials_provider_x509_real_new_destroy) - --add_net_test_case(credentials_provider_sts_web_identity_new_destroy_from_env) --add_net_test_case(credentials_provider_sts_web_identity_new_destroy_from_config) --add_net_test_case(credentials_provider_sts_web_identity_new_failed_without_env_and_config) --add_net_test_case(credentials_provider_sts_web_identity_connect_failure) --add_net_test_case(credentials_provider_sts_web_identity_request_failure) --add_net_test_case(credentials_provider_sts_web_identity_bad_document_failure) --add_net_test_case(credentials_provider_sts_web_identity_test_retry_error1) --add_net_test_case(credentials_provider_sts_web_identity_test_retry_error2) --add_net_test_case(credentials_provider_sts_web_identity_basic_success_env) --add_net_test_case(credentials_provider_sts_web_identity_basic_success_config) --add_net_test_case(credentials_provider_sts_web_identity_success_multi_part_doc) --add_net_test_case(credentials_provider_sts_web_identity_real_new_destroy) -- --add_net_test_case(credentials_provider_sts_direct_config_succeeds) --add_net_test_case(credentials_provider_sts_direct_config_succeeds_after_retry) --add_net_test_case(credentials_provider_sts_direct_config_invalid_doc) --add_net_test_case(credentials_provider_sts_direct_config_connection_failed) --add_net_test_case(credentials_provider_sts_direct_config_service_fails) --add_net_test_case(credentials_provider_sts_from_profile_config_succeeds) --add_net_test_case(credentials_provider_sts_from_profile_config_manual_tls_succeeds) --add_net_test_case(credentials_provider_sts_from_profile_config_environment_succeeds) --add_net_test_case(credentials_provider_sts_cache_expiration_conflict) -+#add_net_test_case(credentials_provider_sts_web_identity_new_destroy_from_env) -+#add_net_test_case(credentials_provider_sts_web_identity_new_destroy_from_config) -+#add_net_test_case(credentials_provider_sts_web_identity_new_failed_without_env_and_config) -+#add_net_test_case(credentials_provider_sts_web_identity_connect_failure) -+#add_net_test_case(credentials_provider_sts_web_identity_request_failure) -+#add_net_test_case(credentials_provider_sts_web_identity_bad_document_failure) -+#add_net_test_case(credentials_provider_sts_web_identity_test_retry_error1) -+#add_net_test_case(credentials_provider_sts_web_identity_test_retry_error2) -+#add_net_test_case(credentials_provider_sts_web_identity_basic_success_env) -+#add_net_test_case(credentials_provider_sts_web_identity_basic_success_config) -+#add_net_test_case(credentials_provider_sts_web_identity_success_multi_part_doc) -+#add_net_test_case(credentials_provider_sts_web_identity_real_new_destroy) -+ -+#add_net_test_case(credentials_provider_sts_direct_config_succeeds) -+#add_net_test_case(credentials_provider_sts_direct_config_succeeds_after_retry) -+#add_net_test_case(credentials_provider_sts_direct_config_invalid_doc) -+#add_net_test_case(credentials_provider_sts_direct_config_connection_failed) -+#add_net_test_case(credentials_provider_sts_direct_config_service_fails) -+#add_net_test_case(credentials_provider_sts_from_profile_config_succeeds) -+#add_net_test_case(credentials_provider_sts_from_profile_config_manual_tls_succeeds) -+#add_net_test_case(credentials_provider_sts_from_profile_config_environment_succeeds) -+#add_net_test_case(credentials_provider_sts_cache_expiration_conflict) - - add_test_case(credentials_provider_process_new_destroy_from_config) - add_test_case(credentials_provider_process_new_failed) diff --git a/gnu/packages/patches/aws-c-auth-install-private-headers.patch b/gnu/packages/patches/aws-c-auth-install-private-headers.patch new file mode 100644 index 0000000000..990fd6f2eb --- /dev/null +++ b/gnu/packages/patches/aws-c-auth-install-private-headers.patch @@ -0,0 +1,19 @@ +aws-sdk-cpp depends on the private headers from aws-c-auth. This dependency was +added to aws-sdk-cpp in commit 23cca02c2df on 2021-06-04. + +The following error is generated when building aws-sdk-cpp when the private +aws-c-auth headers are not installed: + +/tmp/guix-build-aws-sdk-cpp-1.9.121.drv-0/aws-sdk-cpp-1.9.121-checkout/aws-cpp-sdk-core-tests/aws/auth/AWSAuthSignerTest.cpp:17:10: fatal error: aws/auth/private/aws_signing.h: No such file or directory + #include <aws/auth/private/aws_signing.h> + +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -110,6 +114,7 @@ target_link_libraries(${PROJECT_NAME} PUBLIC ${DEP_AWS_LIBS} ${PLATFORM_LIBS}) + aws_prepare_shared_lib_exports(${PROJECT_NAME}) + + install(FILES ${AWS_AUTH_ROOT_HEADERS} DESTINATION "include/aws/auth" COMPONENT Development) ++install(FILES ${AWS_AUTH_PRIVATE_HEADERS} DESTINATION "include/aws/auth/private" COMPONENT Development) + + if (BUILD_SHARED_LIBS) + set (TARGET_DIR "shared") diff --git a/gnu/packages/patches/aws-c-cal-cmake-prefix.patch b/gnu/packages/patches/aws-c-cal-cmake-prefix.patch deleted file mode 100644 index 1ee7aa851d..0000000000 --- a/gnu/packages/patches/aws-c-cal-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -10,6 +10,10 @@ endif() - - option(BYO_CRYPTO "Set this if you want to provide your own cryptography implementation. This will cause the defaults to not be compiled." OFF) - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-compression-cmake-prefix.patch b/gnu/packages/patches/aws-c-compression-cmake-prefix.patch deleted file mode 100644 index eefae19c4a..0000000000 --- a/gnu/packages/patches/aws-c-compression-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -5,6 +5,10 @@ if (POLICY CMP0069) - cmake_policy(SET CMP0069 NEW) # Enable LTO/IPO if available in the compiler, see AwsCFlags - endif() - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-event-stream-cmake-prefix.patch b/gnu/packages/patches/aws-c-event-stream-cmake-prefix.patch deleted file mode 100644 index 79655a910b..0000000000 --- a/gnu/packages/patches/aws-c-event-stream-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -3,6 +3,10 @@ - cmake_minimum_required (VERSION 3.1) - project (aws-c-event-stream C) - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-http-cmake-prefix.patch b/gnu/packages/patches/aws-c-http-cmake-prefix.patch deleted file mode 100644 index ec650a7e82..0000000000 --- a/gnu/packages/patches/aws-c-http-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -7,6 +7,10 @@ endif() - - option(ENABLE_PROXY_INTEGRATION_TESTS "Whether to run the proxy integration tests that rely on a proxy server installed and running locally" OFF) - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-http-disable-networking-tests.patch b/gnu/packages/patches/aws-c-http-disable-networking-tests.patch deleted file mode 100644 index 9bfd422341..0000000000 --- a/gnu/packages/patches/aws-c-http-disable-networking-tests.patch +++ /dev/null @@ -1,48 +0,0 @@ ---- a/tests/CMakeLists.txt -+++ b/tests/CMakeLists.txt -@@ -136,8 +136,8 @@ add_test_case(strutil_trim_http_whitespace) - add_test_case(strutil_is_http_token) - add_test_case(strutil_is_lowercase_http_token) - --add_net_test_case(tls_download_medium_file_h1) --add_net_test_case(tls_download_medium_file_h2) -+#add_net_test_case(tls_download_medium_file_h1) -+#add_net_test_case(tls_download_medium_file_h2) - - add_test_case(websocket_decoder_sanity_check) - add_test_case(websocket_decoder_simplest_frame) -@@ -438,21 +438,21 @@ add_test_case(connection_setup_shutdown) - - # connection manager tests - # unit tests where connections are mocked --add_net_test_case(test_connection_manager_setup_shutdown) --add_net_test_case(test_connection_manager_acquire_release_mix_synchronous) --add_net_test_case(test_connection_manager_connect_callback_failure) --add_net_test_case(test_connection_manager_connect_immediate_failure) --add_net_test_case(test_connection_manager_proxy_setup_shutdown) --add_net_test_case(test_connection_manager_idle_culling_single) --add_net_test_case(test_connection_manager_idle_culling_many) --add_net_test_case(test_connection_manager_idle_culling_mixture) -+#add_net_test_case(test_connection_manager_setup_shutdown) -+#add_net_test_case(test_connection_manager_acquire_release_mix_synchronous) -+#add_net_test_case(test_connection_manager_connect_callback_failure) -+#add_net_test_case(test_connection_manager_connect_immediate_failure) -+#add_net_test_case(test_connection_manager_proxy_setup_shutdown) -+#add_net_test_case(test_connection_manager_idle_culling_single) -+#add_net_test_case(test_connection_manager_idle_culling_many) -+#add_net_test_case(test_connection_manager_idle_culling_mixture) - - # tests where we establish real connections --add_net_test_case(test_connection_manager_single_connection) --add_net_test_case(test_connection_manager_many_connections) --add_net_test_case(test_connection_manager_acquire_release) --add_net_test_case(test_connection_manager_close_and_release) --add_net_test_case(test_connection_manager_acquire_release_mix) -+#add_net_test_case(test_connection_manager_single_connection) -+#add_net_test_case(test_connection_manager_many_connections) -+#add_net_test_case(test_connection_manager_acquire_release) -+#add_net_test_case(test_connection_manager_close_and_release) -+#add_net_test_case(test_connection_manager_acquire_release_mix) - - - add_test_case(h1_server_sanity_check) diff --git a/gnu/packages/patches/aws-c-io-cmake-prefix.patch b/gnu/packages/patches/aws-c-io-cmake-prefix.patch deleted file mode 100644 index da3e4eb4a5..0000000000 --- a/gnu/packages/patches/aws-c-io-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -6,6 +6,10 @@ if (POLICY CMP0069) - cmake_policy(SET CMP0069 NEW) # Enable LTO/IPO if available in the compiler, see AwsCFlags - endif() - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-io-disable-networking-tests.patch b/gnu/packages/patches/aws-c-io-disable-networking-tests.patch deleted file mode 100644 index e2e3afea13..0000000000 --- a/gnu/packages/patches/aws-c-io-disable-networking-tests.patch +++ /dev/null @@ -1,103 +0,0 @@ ---- a/tests/CMakeLists.txt -+++ b/tests/CMakeLists.txt -@@ -52,8 +52,8 @@ add_test_case(local_socket_communication) - add_net_test_case(tcp_socket_communication) - add_net_test_case(udp_socket_communication) - add_test_case(udp_bind_connect_communication) --add_net_test_case(connect_timeout) --add_net_test_case(connect_timeout_cancelation) -+#add_net_test_case(connect_timeout) -+#add_net_test_case(connect_timeout_cancelation) - if (USE_VSOCK) - add_test_case(vsock_loopback_socket_communication) - endif () -@@ -64,7 +64,7 @@ add_test_case(incoming_tcp_sock_errors) - add_test_case(incoming_duplicate_tcp_bind_errors) - add_test_case(incoming_udp_sock_errors) - add_test_case(wrong_thread_read_write_fails) --add_net_test_case(cleanup_before_connect_or_timeout_doesnt_explode) -+#add_net_test_case(cleanup_before_connect_or_timeout_doesnt_explode) - add_test_case(cleanup_in_accept_doesnt_explode) - add_test_case(cleanup_in_write_cb_doesnt_explode) - add_test_case(sock_write_cb_is_async) -@@ -81,21 +81,21 @@ add_test_case(channel_tasks_run) - add_test_case(channel_rejects_post_shutdown_tasks) - add_test_case(channel_cancels_pending_tasks) - add_test_case(channel_duplicate_shutdown) --add_net_test_case(channel_connect_some_hosts_timeout) -+#add_net_test_case(channel_connect_some_hosts_timeout) - --add_net_test_case(test_default_with_ipv6_lookup) -+#add_net_test_case(test_default_with_ipv6_lookup) - add_test_case(test_resolver_ipv6_address_lookup) --add_net_test_case(test_default_with_multiple_lookups) -+#add_net_test_case(test_default_with_multiple_lookups) - add_test_case(test_resolver_ipv4_address_lookup) --add_net_test_case(test_default_with_ipv4_only_lookup) -+#add_net_test_case(test_default_with_ipv4_only_lookup) - add_test_case(test_resolver_ttls) - add_test_case(test_resolver_connect_failure_recording) - add_test_case(test_resolver_ttl_refreshes_on_resolve) - - add_net_test_case(test_resolver_listener_create_destroy) --add_net_test_case(test_resolver_add_listener_before_host) --add_net_test_case(test_resolver_add_listener_after_host) --add_net_test_case(test_resolver_add_multiple_listeners_fn) -+#add_net_test_case(test_resolver_add_listener_before_host) -+#add_net_test_case(test_resolver_add_listener_after_host) -+#add_net_test_case(test_resolver_add_multiple_listeners_fn) - add_net_test_case(test_resolver_listener_host_re_add_fn) - add_net_test_case(test_resolver_listener_multiple_results) - add_net_test_case(test_resolver_listener_address_expired_fn) -@@ -121,11 +121,11 @@ add_test_case(socket_handler_close) - if (NOT BYO_CRYPTO) - add_net_test_case(test_concurrent_cert_import) - add_test_case(tls_channel_echo_and_backpressure_test) -- add_net_test_case(tls_client_channel_negotiation_error_expired) -- add_net_test_case(tls_client_channel_negotiation_error_wrong_host) -- add_net_test_case(tls_client_channel_negotiation_error_wrong_host_with_ca_override) -- add_net_test_case(tls_client_channel_negotiation_error_self_signed) -- add_net_test_case(tls_client_channel_negotiation_error_untrusted_root) -+ #add_net_test_case(tls_client_channel_negotiation_error_expired) -+ #add_net_test_case(tls_client_channel_negotiation_error_wrong_host) -+ #add_net_test_case(tls_client_channel_negotiation_error_wrong_host_with_ca_override) -+ #add_net_test_case(tls_client_channel_negotiation_error_self_signed) -+ #add_net_test_case(tls_client_channel_negotiation_error_untrusted_root) - #track these down in s2n and find out why that aren't failing. - #add_net_test_case(tls_client_channel_negotiation_error_revoked) - #add_net_test_case(tls_client_channel_negotiation_error_pinning) -@@ -133,23 +133,23 @@ if (NOT BYO_CRYPTO) - # once done, add these tests as well - #add_net_test_case(tls_client_channel_negotiation_no_verify_revoked) - #add_net_test_case(tls_client_channel_negotiation_no_verify_pinning) -- add_net_test_case(tls_client_channel_negotiation_no_verify_expired) -- add_net_test_case(tls_client_channel_negotiation_no_verify_wrong_host) -- add_net_test_case(tls_client_channel_negotiation_no_verify_self_signed) -- add_net_test_case(tls_client_channel_negotiation_no_verify_untrusted_root) -- -- add_net_test_case(tls_client_channel_negotiation_error_socket_closed) -- add_net_test_case(tls_client_channel_negotiation_success) -- add_net_test_case(tls_client_channel_negotiation_success_ecc256) -- add_net_test_case(tls_client_channel_negotiation_success_ecc384) -+ #add_net_test_case(tls_client_channel_negotiation_no_verify_expired) -+ #add_net_test_case(tls_client_channel_negotiation_no_verify_wrong_host) -+ #add_net_test_case(tls_client_channel_negotiation_no_verify_self_signed) -+ #add_net_test_case(tls_client_channel_negotiation_no_verify_untrusted_root) -+ -+ #add_net_test_case(tls_client_channel_negotiation_error_socket_closed) -+ #add_net_test_case(tls_client_channel_negotiation_success) -+ #add_net_test_case(tls_client_channel_negotiation_success_ecc256) -+ #add_net_test_case(tls_client_channel_negotiation_success_ecc384) - add_net_test_case(tls_server_multiple_connections) - add_net_test_case(tls_server_hangup_during_negotiation) -- add_net_test_case(tls_client_channel_no_verify) -+ #add_net_test_case(tls_client_channel_no_verify) - add_net_test_case(test_tls_negotiation_timeout) - add_net_test_case(tls_double_channel) - add_net_test_case(alpn_successfully_negotiates) - add_net_test_case(alpn_no_protocol_message) -- add_net_test_case(test_ecc_cert_import) -+ #add_net_test_case(test_ecc_cert_import) - add_test_case(alpn_error_creating_handler) - add_test_case(tls_destroy_null_context) - add_test_case(tls_channel_statistics_test) diff --git a/gnu/packages/patches/aws-c-mqtt-cmake-prefix.patch b/gnu/packages/patches/aws-c-mqtt-cmake-prefix.patch deleted file mode 100644 index 987024b57c..0000000000 --- a/gnu/packages/patches/aws-c-mqtt-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -7,6 +7,10 @@ if (POLICY CMP0069) - cmake_policy(SET CMP0069 NEW) # Enable LTO/IPO if available in the compiler, see AwsCFlags - endif() - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-s3-cmake-prefix.patch b/gnu/packages/patches/aws-c-s3-cmake-prefix.patch deleted file mode 100644 index da3e4eb4a5..0000000000 --- a/gnu/packages/patches/aws-c-s3-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -6,6 +6,10 @@ if (POLICY CMP0069) - cmake_policy(SET CMP0069 NEW) # Enable LTO/IPO if available in the compiler, see AwsCFlags - endif() - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-c-s3-disable-networking-tests.patch b/gnu/packages/patches/aws-c-s3-disable-networking-tests.patch deleted file mode 100644 index e8a3d8ed6a..0000000000 --- a/gnu/packages/patches/aws-c-s3-disable-networking-tests.patch +++ /dev/null @@ -1,153 +0,0 @@ ---- a/tests/CMakeLists.txt -+++ b/tests/CMakeLists.txt -@@ -23,8 +23,8 @@ add_test_case(test_s3_upload_part_message_new) - add_test_case(test_s3_complete_multipart_message_new) - add_test_case(test_s3_abort_multipart_upload_message_new) - --add_net_test_case(test_s3_client_create_destroy) --add_net_test_case(test_s3_client_max_active_connections_override) -+#add_net_test_case(test_s3_client_create_destroy) -+#add_net_test_case(test_s3_client_max_active_connections_override) - add_test_case(test_s3_client_get_max_active_connections) - add_test_case(test_s3_request_create_destroy) - add_test_case(test_s3_client_queue_requests) -@@ -37,75 +37,75 @@ add_test_case(test_s3_client_update_connections_too_many_conns) - add_test_case(test_s3_client_update_connections_finish_result) - add_test_case(test_s3_client_update_connections_clean_up) - --add_net_test_case(test_s3_vip_create_destroy) --add_net_test_case(test_s3_client_add_remove_vips) --add_net_test_case(test_s3_client_resolve_vips) -+#add_net_test_case(test_s3_vip_create_destroy) -+#add_net_test_case(test_s3_client_add_remove_vips) -+#add_net_test_case(test_s3_client_resolve_vips) - add_test_case(test_s3_client_set_vip_connection_warm) - add_test_case(test_s3_client_set_vip_connection_active) - --add_net_test_case(test_s3_client_exceed_retries) --add_net_test_case(test_s3_client_acquire_connection_fail) --add_net_test_case(test_s3_meta_request_fail_prepare_request) --add_net_test_case(test_s3_meta_request_sign_request_fail) --add_net_test_case(test_s3_meta_request_send_request_finish_fail) --add_net_test_case(test_s3_auto_range_put_missing_upload_id) -+#add_net_test_case(test_s3_client_exceed_retries) -+#add_net_test_case(test_s3_client_acquire_connection_fail) -+#add_net_test_case(test_s3_meta_request_fail_prepare_request) -+#add_net_test_case(test_s3_meta_request_sign_request_fail) -+#add_net_test_case(test_s3_meta_request_send_request_finish_fail) -+#add_net_test_case(test_s3_auto_range_put_missing_upload_id) - --add_net_test_case(test_s3_cancel_mpu_create_not_sent) --add_net_test_case(test_s3_cancel_mpu_create_completed) --add_net_test_case(test_s3_cancel_mpu_one_part_completed) --add_net_test_case(test_s3_cancel_mpu_all_parts_completed) --add_net_test_case(test_s3_cancel_mpd_nothing_sent) --add_net_test_case(test_s3_cancel_mpd_one_part_sent) --add_net_test_case(test_s3_cancel_mpd_one_part_completed) --add_net_test_case(test_s3_cancel_mpd_two_parts_completed) --add_net_test_case(test_s3_cancel_mpd_head_object_sent) --add_net_test_case(test_s3_cancel_mpd_head_object_completed) --add_net_test_case(test_s3_cancel_mpd_get_without_range_sent) --add_net_test_case(test_s3_cancel_mpd_get_without_range_completed) -+#add_net_test_case(test_s3_cancel_mpu_create_not_sent) -+#add_net_test_case(test_s3_cancel_mpu_create_completed) -+#add_net_test_case(test_s3_cancel_mpu_one_part_completed) -+#add_net_test_case(test_s3_cancel_mpu_all_parts_completed) -+#add_net_test_case(test_s3_cancel_mpd_nothing_sent) -+#add_net_test_case(test_s3_cancel_mpd_one_part_sent) -+#add_net_test_case(test_s3_cancel_mpd_one_part_completed) -+#add_net_test_case(test_s3_cancel_mpd_two_parts_completed) -+#add_net_test_case(test_s3_cancel_mpd_head_object_sent) -+#add_net_test_case(test_s3_cancel_mpd_head_object_completed) -+#add_net_test_case(test_s3_cancel_mpd_get_without_range_sent) -+#add_net_test_case(test_s3_cancel_mpd_get_without_range_completed) - --add_net_test_case(test_s3_get_object_tls_disabled) --add_net_test_case(test_s3_get_object_tls_enabled) --add_net_test_case(test_s3_get_object_tls_default) --add_net_test_case(test_s3_get_object_less_than_part_size) --add_net_test_case(test_s3_get_object_empty_object) --add_net_test_case(test_s3_get_object_multiple) --add_net_test_case(test_s3_get_object_sse_kms) --add_net_test_case(test_s3_get_object_sse_aes256) --add_net_test_case(test_s3_no_signing) --add_net_test_case(test_s3_signing_override) --add_net_test_case(test_s3_put_object_tls_disabled) --add_net_test_case(test_s3_put_object_tls_enabled) --add_net_test_case(test_s3_put_object_tls_default) --add_net_test_case(test_s3_multipart_put_object_with_acl) --add_net_test_case(test_s3_put_object_multiple) --add_net_test_case(test_s3_put_object_less_than_part_size) --add_net_test_case(test_s3_put_object_empty_object) --add_net_test_case(test_s3_put_object_with_part_remainder) --add_net_test_case(test_s3_put_object_sse_kms) --add_net_test_case(test_s3_put_object_sse_kms_multipart) --add_net_test_case(test_s3_put_object_sse_aes256) --add_net_test_case(test_s3_put_object_sse_aes256_multipart) --add_net_test_case(test_s3_put_object_double_slashes) --add_net_test_case(test_s3_meta_request_default) --add_net_test_case(test_s3_put_object_fail_headers_callback) --add_net_test_case(test_s3_put_object_fail_body_callback) --add_net_test_case(test_s3_get_object_fail_headers_callback) --add_net_test_case(test_s3_get_object_fail_body_callback) --add_net_test_case(test_s3_default_fail_headers_callback) --add_net_test_case(test_s3_default_fail_body_callback) --add_net_test_case(test_s3_error_missing_file) --add_net_test_case(test_s3_existing_host_entry) --add_net_test_case(test_s3_put_fail_object_invalid_request) --add_net_test_case(test_s3_put_fail_object_inputstream_fail_reading) --add_net_test_case(test_s3_put_single_part_fail_object_inputstream_fail_reading) --add_net_test_case(test_s3_bad_endpoint) --add_net_test_case(test_s3_put_object_clamp_part_size) --add_net_test_case(test_s3_different_endpoints) --add_net_test_case(test_s3_auto_ranged_get_sending_user_agent) --add_net_test_case(test_s3_auto_ranged_put_sending_user_agent) --add_net_test_case(test_s3_default_sending_meta_request_user_agent) --add_net_test_case(test_s3_range_requests) --add_net_test_case(test_s3_not_satisfiable_range) -+#add_net_test_case(test_s3_get_object_tls_disabled) -+#add_net_test_case(test_s3_get_object_tls_enabled) -+#add_net_test_case(test_s3_get_object_tls_default) -+#add_net_test_case(test_s3_get_object_less_than_part_size) -+#add_net_test_case(test_s3_get_object_empty_object) -+#add_net_test_case(test_s3_get_object_multiple) -+#add_net_test_case(test_s3_get_object_sse_kms) -+#add_net_test_case(test_s3_get_object_sse_aes256) -+#add_net_test_case(test_s3_no_signing) -+#add_net_test_case(test_s3_signing_override) -+#add_net_test_case(test_s3_put_object_tls_disabled) -+#add_net_test_case(test_s3_put_object_tls_enabled) -+#add_net_test_case(test_s3_put_object_tls_default) -+#add_net_test_case(test_s3_multipart_put_object_with_acl) -+#add_net_test_case(test_s3_put_object_multiple) -+#add_net_test_case(test_s3_put_object_less_than_part_size) -+#add_net_test_case(test_s3_put_object_empty_object) -+#add_net_test_case(test_s3_put_object_with_part_remainder) -+#add_net_test_case(test_s3_put_object_sse_kms) -+#add_net_test_case(test_s3_put_object_sse_kms_multipart) -+#add_net_test_case(test_s3_put_object_sse_aes256) -+#add_net_test_case(test_s3_put_object_sse_aes256_multipart) -+#add_net_test_case(test_s3_put_object_double_slashes) -+#add_net_test_case(test_s3_meta_request_default) -+#add_net_test_case(test_s3_put_object_fail_headers_callback) -+#add_net_test_case(test_s3_put_object_fail_body_callback) -+#add_net_test_case(test_s3_get_object_fail_headers_callback) -+#add_net_test_case(test_s3_get_object_fail_body_callback) -+#add_net_test_case(test_s3_default_fail_headers_callback) -+#add_net_test_case(test_s3_default_fail_body_callback) -+#add_net_test_case(test_s3_error_missing_file) -+#add_net_test_case(test_s3_existing_host_entry) -+#add_net_test_case(test_s3_put_fail_object_invalid_request) -+#add_net_test_case(test_s3_put_fail_object_inputstream_fail_reading) -+#add_net_test_case(test_s3_put_single_part_fail_object_inputstream_fail_reading) -+#add_net_test_case(test_s3_bad_endpoint) -+#add_net_test_case(test_s3_put_object_clamp_part_size) -+#add_net_test_case(test_s3_different_endpoints) -+#add_net_test_case(test_s3_auto_ranged_get_sending_user_agent) -+#add_net_test_case(test_s3_auto_ranged_put_sending_user_agent) -+#add_net_test_case(test_s3_default_sending_meta_request_user_agent) -+#add_net_test_case(test_s3_range_requests) -+#add_net_test_case(test_s3_not_satisfiable_range) - - add_test_case(test_s3_replace_quote_entities) - add_test_case(test_s3_parse_content_range_response_header) diff --git a/gnu/packages/patches/aws-checksums-cmake-prefix.patch b/gnu/packages/patches/aws-checksums-cmake-prefix.patch deleted file mode 100644 index f6a5c9ad9c..0000000000 --- a/gnu/packages/patches/aws-checksums-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -8,6 +8,10 @@ - cmake_policy(SET CMP0069 NEW) # Enable LTO/IPO if available in the compiler, see AwsCFlags - endif() - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-crt-cpp-cmake-prefix.patch b/gnu/packages/patches/aws-crt-cpp-cmake-prefix.patch deleted file mode 100644 index b45818875f..0000000000 --- a/gnu/packages/patches/aws-crt-cpp-cmake-prefix.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -39,6 +39,10 @@ list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake") - include(AwsCheckHeadersCxx) - include(CTest) - -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - if (DEFINED CMAKE_PREFIX_PATH) - file(TO_CMAKE_PATH "${CMAKE_PREFIX_PATH}" CMAKE_PREFIX_PATH) - endif() diff --git a/gnu/packages/patches/aws-crt-cpp-disable-networking-tests.patch b/gnu/packages/patches/aws-crt-cpp-disable-networking-tests.patch deleted file mode 100644 index 4c1be7d028..0000000000 --- a/gnu/packages/patches/aws-crt-cpp-disable-networking-tests.patch +++ /dev/null @@ -1,47 +0,0 @@ ---- a/tests/CMakeLists.txt -+++ b/tests/CMakeLists.txt -@@ -13,9 +13,9 @@ add_test_case(ApiMultiDefaultCreateDestroy) - add_test_case(EventLoopResourceSafety) - add_test_case(ClientBootstrapResourceSafety) - if (NOT BYO_CRYPTO) -- add_net_test_case(MqttClientResourceSafety) -+ #add_net_test_case(MqttClientResourceSafety) - add_net_test_case(MqttClientNewConnectionUninitializedTlsContext) -- add_net_test_case(TLSContextResourceSafety) -+ #add_net_test_case(TLSContextResourceSafety) - add_net_test_case(TLSContextUninitializedNewConnectionOptions) - endif () - add_test_case(Base64RoundTrip) -@@ -29,15 +29,15 @@ add_test_case(SHA256ResourceSafety) - add_test_case(MD5ResourceSafety) - add_test_case(SHA256HMACResourceSafety) - if (NOT BYO_CRYPTO) -- add_net_test_case(HttpDownloadNoBackPressureHTTP1_1) -- add_net_test_case(HttpDownloadNoBackPressureHTTP2) -- add_net_test_case(HttpStreamUnActivated) -+ #add_net_test_case(HttpDownloadNoBackPressureHTTP1_1) -+ #add_net_test_case(HttpDownloadNoBackPressureHTTP2) -+ #add_net_test_case(HttpStreamUnActivated) - add_net_test_case(HttpCreateConnectionInvalidTlsConnectionOptions) - add_net_test_case(IotPublishSubscribe) -- add_net_test_case(HttpClientConnectionManagerResourceSafety) -+ #add_net_test_case(HttpClientConnectionManagerResourceSafety) - add_net_test_case(HttpClientConnectionManagerInvalidTlsConnectionOptions) -- add_net_test_case(HttpClientConnectionWithPendingAcquisitions) -- add_net_test_case(HttpClientConnectionWithPendingAcquisitionsAndClosedConnections) -+ #add_net_test_case(HttpClientConnectionWithPendingAcquisitions) -+ #add_net_test_case(HttpClientConnectionWithPendingAcquisitionsAndClosedConnections) - endif () - add_test_case(DefaultResolution) - add_test_case(OptionalCopySafety) -@@ -55,8 +55,8 @@ add_test_case(TestProviderEnvironmentGet) - add_test_case(TestProviderProfileGet) - add_test_case(TestProviderImdsGet) - if (NOT BYO_CRYPTO) -- add_net_test_case(TestProviderDefaultChainGet) -- add_net_test_case(TestProviderDefaultChainManualTlsContextGet) -+ #add_net_test_case(TestProviderDefaultChainGet) -+ #add_net_test_case(TestProviderDefaultChainManualTlsContextGet) - endif () - add_test_case(TestProviderDelegateGet) - add_test_case(HttpRequestTestCreateDestroy) diff --git a/gnu/packages/patches/aws-sdk-cpp-cmake-prefix.patch b/gnu/packages/patches/aws-sdk-cpp-cmake-prefix.patch deleted file mode 100644 index efc1218834..0000000000 --- a/gnu/packages/patches/aws-sdk-cpp-cmake-prefix.patch +++ /dev/null @@ -1,18 +0,0 @@ ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -98,9 +98,13 @@ set(PYTHON_CMD "python") - # CMAKE_MODULE_PATH is a CMAKE variable. It contains a list of paths - # which could be used to search CMAKE modules by "include()" or "find_package()", but the default value is empty. - # Add ${CMAKE_INSTALL_LIBDIR}/cmake and ${CMAKE_PREFIX_PATH}/lib/cmake to search list -+if (DEFINED ENV{CMAKE_PREFIX_PATH}) -+ set(CMAKE_PREFIX_PATH $ENV{CMAKE_PREFIX_PATH}) -+endif() -+ - list(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_LIST_DIR}/cmake") --set(AWS_MODULE_DIR "/${CMAKE_INSTALL_LIBDIR}/cmake") --string(REPLACE ";" "${AWS_MODULE_DIR};" AWS_MODULE_PATH "${CMAKE_PREFIX_PATH}${AWS_MODULE_DIR}") -+set(AWS_MODULE_DIR "${CMAKE_INSTALL_LIBDIR}/cmake") -+string(REPLACE ":" "${AWS_MODULE_DIR};" AWS_MODULE_PATH "${CMAKE_PREFIX_PATH}${AWS_MODULE_DIR}") - list(APPEND CMAKE_MODULE_PATH ${AWS_MODULE_PATH}) - - # include() will "load and run" cmake script diff --git a/gnu/packages/patches/aws-sdk-cpp-disable-networking-tests.patch b/gnu/packages/patches/aws-sdk-cpp-disable-networking-tests.patch deleted file mode 100644 index 3b582d9628..0000000000 --- a/gnu/packages/patches/aws-sdk-cpp-disable-networking-tests.patch +++ /dev/null @@ -1,44 +0,0 @@ ---- a/aws-cpp-sdk-core-tests/http/HttpClientTest.cpp -+++ b/aws-cpp-sdk-core-tests/http/HttpClientTest.cpp -@@ -92,12 +92,12 @@ TEST(HttpClientTest, TestRandomURLWithNoProxy) - makeRandomHttpRequest(httpClient, false); - } - --TEST(HttpClientTest, TestRandomURLWithProxy) --{ -- ClientConfiguration configuration = makeClientConfigurationWithProxy(); -- auto httpClient = CreateHttpClient(configuration); -- makeRandomHttpRequest(httpClient, true); // we expect it to try to use proxy that is invalid --} -+//TEST(HttpClientTest, TestRandomURLWithProxy) -+//{ -+// ClientConfiguration configuration = makeClientConfigurationWithProxy(); -+// auto httpClient = CreateHttpClient(configuration); -+// makeRandomHttpRequest(httpClient, true); // we expect it to try to use proxy that is invalid -+//} - - TEST(HttpClientTest, TestRandomURLWithProxyAndDeclaredAsNonProxyHost) - { -@@ -119,14 +119,14 @@ TEST(HttpClientTest, TestRandomURLWithProxyAndDeclaredParentDomainAsNonProxyHost - makeRandomHttpRequest(httpClient, false); - } - --TEST(HttpClientTest, TestRandomURLWithProxyAndOtherDeclaredAsNonProxyHost) --{ -- ClientConfiguration configuration = makeClientConfigurationWithProxy(); -- configuration.nonProxyHosts = Aws::Utils::Array<Aws::String>(1); -- configuration.nonProxyHosts[0] = "http://test.non.filtered.aws"; -- auto httpClient = CreateHttpClient(configuration); -- makeRandomHttpRequest(httpClient, true); --} -+//TEST(HttpClientTest, TestRandomURLWithProxyAndOtherDeclaredAsNonProxyHost) -+//{ -+// ClientConfiguration configuration = makeClientConfigurationWithProxy(); -+// configuration.nonProxyHosts = Aws::Utils::Array<Aws::String>(1); -+// configuration.nonProxyHosts[0] = "http://test.non.filtered.aws"; -+// auto httpClient = CreateHttpClient(configuration); -+// makeRandomHttpRequest(httpClient, true); -+//} - - // TODO: Pending Fix on Windows. - #if ENABLE_CURL_CLIENT diff --git a/gnu/packages/patches/aws-sdk-cpp-disable-werror.patch b/gnu/packages/patches/aws-sdk-cpp-disable-werror.patch deleted file mode 100644 index 249c299239..0000000000 --- a/gnu/packages/patches/aws-sdk-cpp-disable-werror.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- a/cmake/compiler_settings.cmake -+++ b/cmake/compiler_settings.cmake -@@ -53,7 +53,7 @@ macro(set_gcc_flags) - endmacro() - - macro(set_gcc_warnings) -- list(APPEND AWS_COMPILER_WARNINGS "-Wall" "-Werror" "-pedantic" "-Wextra") -+ list(APPEND AWS_COMPILER_WARNINGS "-Wall" "-pedantic" "-Wextra") - if(COMPILER_CLANG) - if(PLATFORM_ANDROID) - # when using clang with libc and API lower than 21 we need to include Android support headers and ignore the gnu-include-next warning. diff --git a/gnu/packages/patches/bear-disable-preinstall-tests.patch b/gnu/packages/patches/bear-disable-preinstall-tests.patch index c65095405f..ffb31c28f1 100644 --- a/gnu/packages/patches/bear-disable-preinstall-tests.patch +++ b/gnu/packages/patches/bear-disable-preinstall-tests.patch @@ -1,20 +1,9 @@ -From d7d0cdd48017679e8529f8475d1b9902944cf243 Mon Sep 17 00:00:00 2001 -From: Brett Gilio <brettg@gnu.org> -Date: Sun, 20 Dec 2020 14:43:30 -0600 -Subject: [PATCH] Disallow Pre-install Checks - ---- - CMakeLists.txt | 8 -------- - 1 file changed, 8 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 45c6d27..73b4ace 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -58,10 +58,6 @@ ExternalProject_Add(BearSource - -DROOT_INSTALL_PREFIX:PATH=${CMAKE_INSTALL_PREFIX} +@@ -60,10 +60,6 @@ ExternalProject_Add(BearSource -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE} -DENABLE_UNIT_TESTS:BOOL=${ENABLE_UNIT_TESTS} + -DENABLE_FUNC_TESTS:BOOL=${ENABLE_FUNC_TESTS} - TEST_BEFORE_INSTALL - 1 - TEST_COMMAND @@ -22,9 +11,9 @@ index 45c6d27..73b4ace 100644 ) # Run the functional tests -@@ -73,12 +69,8 @@ if (ENABLE_FUNC_TESTS) - BearSource - CMAKE_CACHE_ARGS +@@ -77,12 +73,8 @@ if (ENABLE_FUNC_TESTS) + -DCMAKE_INSTALL_LIBDIR:PATH=${CMAKE_INSTALL_LIBDIR} + -DCMAKE_INSTALL_BINDIR:PATH=${CMAKE_INSTALL_BINDIR} -DSTAGED_INSTALL_PREFIX:PATH=${STAGED_INSTALL_PREFIX} - TEST_BEFORE_INSTALL - 1 @@ -35,6 +24,3 @@ index 45c6d27..73b4ace 100644 ) endif () --- -2.29.2 - diff --git a/gnu/packages/patches/genimage-mke2fs-test.patch b/gnu/packages/patches/genimage-mke2fs-test.patch new file mode 100644 index 0000000000..c4a17590f2 --- /dev/null +++ b/gnu/packages/patches/genimage-mke2fs-test.patch @@ -0,0 +1,40 @@ +diff --git a/test/mke2fs.dump b/test/mke2fs.dump +index 8e63662..0c25798 100644 +--- a/test/mke2fs.dump ++++ b/test/mke2fs.dump +@@ -11,7 +11,7 @@ Filesystem OS type: Linux + Inode count: 8192 + Block count: 32768 + Reserved block count: 1638 +-Free blocks: 26568 ++Free blocks: 26566 + Free inodes: 8141 + First block: 1 + Block size: 1024 +@@ -29,7 +29,7 @@ Mount count: 0 + Maximum mount count: -1 + Last checked: Sat Jan 1 00:00:00 2000 + Check interval: 0 (<none>) +-Lifetime writes: 141 kB ++Lifetime writes: 143 kB + Reserved blocks uid: 0 (user root) + Reserved blocks gid: 0 (group root) + First inode: 11 +@@ -49,13 +49,13 @@ Journal sequence: 0x00000001 + Journal start: 0 + + +-Group 0: (Blocks 1-8192) csum 0x74a0 [ITABLE_ZEROED] ++Group 0: (Blocks 1-8192) csum 0x3f30 [ITABLE_ZEROED] + Primary superblock at 1, Group descriptors at 2-2 +- Block bitmap at 3 (+2), csum 0x16cec4db ++ Block bitmap at 3 (+2), csum 0x8d67cdef + Inode bitmap at 7 (+6), csum 0xb1052088 + Inode table at 11-522 (+10) +- 6093 free blocks, 1997 free inodes, 18 directories, 1997 unused inodes +- Free blocks: 2100-8192 ++ 6091 free blocks, 1997 free inodes, 18 directories, 1997 unused inodes ++ Free blocks: 2102-8192 + Free inodes: 52-2048 + Group 1: (Blocks 8193-16384) csum 0x8fde [INODE_UNINIT, BLOCK_UNINIT, ITABLE_ZEROED] + Backup superblock at 8193, Group descriptors at 8194-8194 diff --git a/gnu/packages/patches/genimage-signedness.patch b/gnu/packages/patches/genimage-signedness.patch deleted file mode 100644 index 2204dfb545..0000000000 --- a/gnu/packages/patches/genimage-signedness.patch +++ /dev/null @@ -1,24 +0,0 @@ -commit 6574665f9d6c0757e8f55ccb465afbcaa90bf019 -Author: Timotej Lazar <timotej.lazar@araneo.si> -Date: Wed Aug 19 19:36:02 2020 +0200 - - test: normalize flags reported by dumpe2fs - - Filesystem flags depend on the system – usually signed_directory_hash, - but unsigned_directory_hash at least on arm64. - - Signed-off-by: Timotej Lazar <timotej.lazar@araneo.si> - -diff --git a/test/basic-images.test b/test/basic-images.test -index f6685e1..cb104c3 100755 ---- a/test/basic-images.test -+++ b/test/basic-images.test -@@ -158,6 +158,8 @@ check_ext() { - # format change - csum2="Group 0: (Blocks 1-4095) \\[ITABLE_ZEROED\\]\| Checksum .*, unused inodes 205" - dumpe2fs "${1}" | grep -v "^\($uuid\|$seed\|$csum1\|$csum2\)" > "dump" && -+ # some architectures (including arm64) use unsigned char -+ sed -i 's/un\(signed_directory_hash\)/\1/' "dump" && - # fixup for ext3 journal size with old tune2fs - sed -i 's/^\(Journal size: \)1029k$/\11024k/' "dump" && - # output format changed with some version diff --git a/gnu/packages/patches/python-pytorch-system-libraries.patch b/gnu/packages/patches/python-pytorch-system-libraries.patch index 76c06520f0..ae872cfd84 100644 --- a/gnu/packages/patches/python-pytorch-system-libraries.patch +++ b/gnu/packages/patches/python-pytorch-system-libraries.patch @@ -1,37 +1,11 @@ Use our own googletest rather than the bundled one. Get NNPACK to use our own PeachPy rather than the bundled one. -diff --git a/cmake/Dependencies.cmake b/cmake/Dependencies.cmake -index 5d57b9ca78..620cca4e60 100644 ---- a/cmake/Dependencies.cmake -+++ b/cmake/Dependencies.cmake -@@ -644,11 +644,6 @@ if(BUILD_TEST OR BUILD_MOBILE_BENCHMARK OR BUILD_MOBILE_TEST) - # this shouldn't be necessary anymore. - get_property(INC_DIR_temp DIRECTORY PROPERTY INCLUDE_DIRECTORIES) - set_property(DIRECTORY PROPERTY INCLUDE_DIRECTORIES "") -- add_subdirectory(${CMAKE_CURRENT_LIST_DIR}/../third_party/googletest) -- set_property(DIRECTORY PROPERTY INCLUDE_DIRECTORIES ${INC_DIR_temp}) -- -- include_directories(BEFORE SYSTEM ${CMAKE_CURRENT_LIST_DIR}/../third_party/googletest/googletest/include) -- include_directories(BEFORE SYSTEM ${CMAKE_CURRENT_LIST_DIR}/../third_party/googletest/googlemock/include) - - # We will not need to test benchmark lib itself. - set(BENCHMARK_ENABLE_TESTING OFF CACHE BOOL "Disable benchmark testing as we don't need it.") -@@ -1485,7 +1480,7 @@ if(CAFFE2_CMAKE_BUILDING_WITH_MAIN_REPO AND NOT INTERN_DISABLE_ONNX) - endif() - set_property(TARGET onnx_proto PROPERTY IMPORTED_LOCATION ${ONNX_PROTO_LIBRARY}) - message("-- Found onnx: ${ONNX_LIBRARY} ${ONNX_PROTO_LIBRARY}") -- list(APPEND Caffe2_DEPENDENCY_LIBS onnx_proto onnx) -+ list(APPEND Caffe2_DEPENDENCY_LIBS onnx_proto onnx onnx_optimizer) - endif() - include_directories(${FOXI_INCLUDE_DIRS}) - list(APPEND Caffe2_DEPENDENCY_LIBS foxi_loader) - diff --git a/caffe2/CMakeLists.txt b/caffe2/CMakeLists.txt -index 50ebb224ce..5953d9ddf7 100644 +index 26210cb5..18b6df27 100644 --- a/caffe2/CMakeLists.txt +++ b/caffe2/CMakeLists.txt -@@ -1632,7 +1632,7 @@ if(BUILD_TEST) +@@ -1723,7 +1723,7 @@ if(BUILD_TEST) if(NOT MSVC) add_executable(${test_name}_${CPU_CAPABILITY} "${test_src}" ../aten/src/ATen/native/quantized/affine_quantizer_base.cpp) # TODO: Get rid of c10 dependency (which is only needed for the implementation of AT_ERROR) @@ -40,16 +14,16 @@ index 50ebb224ce..5953d9ddf7 100644 if(USE_FBGEMM) target_link_libraries(${test_name}_${CPU_CAPABILITY} fbgemm) endif() -@@ -1655,7 +1655,7 @@ if(BUILD_TEST) +@@ -1746,7 +1746,7 @@ if(BUILD_TEST) foreach(test_src ${Caffe2_CPU_TEST_SRCS}) get_filename_component(test_name ${test_src} NAME_WE) add_executable(${test_name} "${test_src}") - target_link_libraries(${test_name} torch_library gtest_main) + target_link_libraries(${test_name} torch_library gtest_main gtest) - target_include_directories(${test_name} PRIVATE $<INSTALL_INTERFACE:include>) - target_include_directories(${test_name} PRIVATE $<BUILD_INTERFACE:${CMAKE_BINARY_DIR}/include>) - target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE}) -@@ -1673,7 +1673,7 @@ if(BUILD_TEST) + if(USE_OPENMP) + # -fopenmp is a compile time flag and as result not guaranteed + # to link executable against OpenMP runtime library +@@ -1769,7 +1769,7 @@ if(BUILD_TEST) foreach(test_src ${Caffe2_GPU_TEST_SRCS}) get_filename_component(test_name ${test_src} NAME_WE) cuda_add_executable(${test_name} "${test_src}") @@ -58,7 +32,7 @@ index 50ebb224ce..5953d9ddf7 100644 target_include_directories(${test_name} PRIVATE $<INSTALL_INTERFACE:include>) target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE}) add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>) -@@ -1691,7 +1691,7 @@ if(BUILD_TEST) +@@ -1787,7 +1787,7 @@ if(BUILD_TEST) foreach(test_src ${Caffe2_VULKAN_TEST_SRCS}) get_filename_component(test_name ${test_src} NAME_WE) add_executable(${test_name} "${test_src}") @@ -67,7 +41,7 @@ index 50ebb224ce..5953d9ddf7 100644 target_include_directories(${test_name} PRIVATE $<INSTALL_INTERFACE:include>) target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE}) add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>) -@@ -1709,7 +1709,7 @@ if(BUILD_TEST) +@@ -1805,7 +1805,7 @@ if(BUILD_TEST) foreach(test_src ${Caffe2_HIP_TEST_SRCS}) get_filename_component(test_name ${test_src} NAME_WE) add_executable(${test_name} "${test_src}") @@ -76,47 +50,33 @@ index 50ebb224ce..5953d9ddf7 100644 target_include_directories(${test_name} PRIVATE $<INSTALL_INTERFACE:include>) target_include_directories(${test_name} PRIVATE ${Caffe2_CPU_INCLUDE} ${Caffe2_HIP_INCLUDE}) target_compile_options(${test_name} PRIVATE ${HIP_CXX_FLAGS}) - -diff --git a/torch/lib/c10d/test/CMakeLists.txt b/torch/lib/c10d/test/CMakeLists.txt -index b74d4b65f7..fc7c207505 100644 ---- a/torch/lib/c10d/test/CMakeLists.txt -+++ b/torch/lib/c10d/test/CMakeLists.txt -@@ -16,24 +16,24 @@ function(c10d_add_test test_src) - add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>) - endfunction() - --c10d_add_test(FileStoreTest.cpp c10d gtest_main) --c10d_add_test(TCPStoreTest.cpp c10d gtest_main) -+c10d_add_test(FileStoreTest.cpp c10d gtest_main gtest) -+c10d_add_test(TCPStoreTest.cpp c10d gtest_main gtest) - if(NOT WIN32) -- c10d_add_test(HashStoreTest.cpp c10d gtest_main) -+ c10d_add_test(HashStoreTest.cpp c10d gtest_main gtest) - endif() +diff --git a/cmake/Dependencies.cmake b/cmake/Dependencies.cmake +index ca560288..c0696e53 100644 +--- a/cmake/Dependencies.cmake ++++ b/cmake/Dependencies.cmake +@@ -684,11 +684,6 @@ if(BUILD_TEST OR BUILD_MOBILE_BENCHMARK OR BUILD_MOBILE_TEST) + # this shouldn't be necessary anymore. + get_property(INC_DIR_temp DIRECTORY PROPERTY INCLUDE_DIRECTORIES) + set_property(DIRECTORY PROPERTY INCLUDE_DIRECTORIES "") +- add_subdirectory(${CMAKE_CURRENT_LIST_DIR}/../third_party/googletest) +- set_property(DIRECTORY PROPERTY INCLUDE_DIRECTORIES ${INC_DIR_temp}) +- +- include_directories(BEFORE SYSTEM ${CMAKE_CURRENT_LIST_DIR}/../third_party/googletest/googletest/include) +- include_directories(BEFORE SYSTEM ${CMAKE_CURRENT_LIST_DIR}/../third_party/googletest/googlemock/include) - if(USE_CUDA) - if(USE_C10D_GLOO) -- c10d_add_test(ProcessGroupGlooTest.cpp c10d c10d_cuda_test gtest_main) -- c10d_add_test(ProcessGroupGlooAsyncTest.cpp c10d c10d_cuda_test gtest_main) -+ c10d_add_test(ProcessGroupGlooTest.cpp c10d c10d_cuda_test gtest_main gtest) -+ c10d_add_test(ProcessGroupGlooAsyncTest.cpp c10d c10d_cuda_test gtest_main gtest) - endif() - if(USE_C10D_NCCL) -- c10d_add_test(ProcessGroupNCCLTest.cpp c10d c10d_cuda_test gtest_main) -+ c10d_add_test(ProcessGroupNCCLTest.cpp c10d c10d_cuda_test gtest_main gtest) - c10d_add_test(ProcessGroupNCCLErrorsTest.cpp c10d c10d_cuda_test -- gtest_main) -+ gtest_main gtest) - endif() - else() - if(USE_C10D_GLOO) -- c10d_add_test(ProcessGroupGlooTest.cpp c10d gtest_main) -+ c10d_add_test(ProcessGroupGlooTest.cpp c10d gtest_main gtest) + # We will not need to test benchmark lib itself. + set(BENCHMARK_ENABLE_TESTING OFF CACHE BOOL "Disable benchmark testing as we don't need it.") +@@ -1537,7 +1532,7 @@ if(CAFFE2_CMAKE_BUILDING_WITH_MAIN_REPO AND NOT INTERN_DISABLE_ONNX) + endif() + set_property(TARGET onnx_proto PROPERTY IMPORTED_LOCATION ${ONNX_PROTO_LIBRARY}) + message("-- Found onnx: ${ONNX_LIBRARY} ${ONNX_PROTO_LIBRARY}") +- list(APPEND Caffe2_DEPENDENCY_LIBS onnx_proto onnx) ++ list(APPEND Caffe2_DEPENDENCY_LIBS onnx_proto onnx onnx_optimizer) endif() - endif() - + include_directories(${FOXI_INCLUDE_DIRS}) + list(APPEND Caffe2_DEPENDENCY_LIBS foxi_loader) diff --git a/cmake/External/nnpack.cmake b/cmake/External/nnpack.cmake -index a41343cbb5..6075bdd0a4 100644 +index a41343cb..6075bdd0 100644 --- a/cmake/External/nnpack.cmake +++ b/cmake/External/nnpack.cmake @@ -40,7 +40,7 @@ endif() @@ -137,3 +97,61 @@ index a41343cbb5..6075bdd0a4 100644 -set(USE_NNPACK OFF) +set(NNPACK_FOUND TRUE) +set(USE_NNPACK ON) +diff --git a/test/cpp/c10d/CMakeLists.txt b/test/cpp/c10d/CMakeLists.txt +index 2e48773a..a70506ce 100644 +--- a/test/cpp/c10d/CMakeLists.txt ++++ b/test/cpp/c10d/CMakeLists.txt +@@ -17,14 +17,14 @@ function(c10d_add_test test_src) + add_test(NAME ${test_name} COMMAND $<TARGET_FILE:${test_name}>) + endfunction() + +-c10d_add_test(FileStoreTest.cpp torch_cpu gtest_main) +-c10d_add_test(TCPStoreTest.cpp torch_cpu gtest_main) ++c10d_add_test(FileStoreTest.cpp torch_cpu gtest_main gtest) ++c10d_add_test(TCPStoreTest.cpp torch_cpu gtest_main gtest) + if(INSTALL_TEST) + install(TARGETS FileStoreTest DESTINATION bin) + install(TARGETS TCPStoreTest DESTINATION bin) + endif() + if(NOT WIN32) +- c10d_add_test(HashStoreTest.cpp torch_cpu gtest_main) ++ c10d_add_test(HashStoreTest.cpp torch_cpu gtest_main gtest) + if(INSTALL_TEST) + install(TARGETS HashStoreTest DESTINATION bin) + endif() +@@ -32,11 +32,11 @@ endif() + + if(USE_CUDA) + if(USE_GLOO AND USE_C10D_GLOO) +- c10d_add_test(ProcessGroupGlooTest.cpp torch_cpu c10d_cuda_test gtest_main) ++ c10d_add_test(ProcessGroupGlooTest.cpp torch_cpu c10d_cuda_test gtest_main gtest) + if(INSTALL_TEST) + install(TARGETS ProcessGroupGlooTest DESTINATION bin) + endif() +- c10d_add_test(ProcessGroupGlooAsyncTest.cpp torch_cpu c10d_cuda_test gtest_main) ++ c10d_add_test(ProcessGroupGlooAsyncTest.cpp torch_cpu c10d_cuda_test gtest_main gtest) + endif() + if(USE_NCCL AND USE_C10D_NCCL) + # NCCL is a private dependency of libtorch, but the tests include some +@@ -57,7 +57,7 @@ if(USE_CUDA) + endif() + else() + if(USE_GLOO AND USE_C10D_GLOO) +- c10d_add_test(ProcessGroupGlooTest.cpp torch_cpu gtest_main) ++ c10d_add_test(ProcessGroupGlooTest.cpp torch_cpu gtest_main gtest) + endif() + endif() + +diff --git a/test/cpp/tensorexpr/CMakeLists.txt b/test/cpp/tensorexpr/CMakeLists.txt +index 213e99bd..ecaae840 100644 +--- a/test/cpp/tensorexpr/CMakeLists.txt ++++ b/test/cpp/tensorexpr/CMakeLists.txt +@@ -46,7 +46,7 @@ target_include_directories(tutorial_tensorexpr PRIVATE ${ATen_CPU_INCLUDE}) + # pthreadpool header. For some build environment we need add the dependency + # explicitly. + if(USE_PTHREADPOOL) +- target_link_libraries(test_tensorexpr PRIVATE pthreadpool_interface) ++ target_link_libraries(test_tensorexpr PRIVATE pthreadpool) + endif() + if(USE_CUDA) + target_link_libraries(test_tensorexpr PRIVATE diff --git a/gnu/packages/patches/rust-adblock-ignore-live-tests.patch b/gnu/packages/patches/rust-adblock-ignore-live-tests.patch new file mode 100644 index 0000000000..fc7f2858ff --- /dev/null +++ b/gnu/packages/patches/rust-adblock-ignore-live-tests.patch @@ -0,0 +1,69 @@ +From b83b5b453d3f7883ef4c12f84a7045486957c709 Mon Sep 17 00:00:00 2001 +From: Petr Hodina <phodina@protonmail.com> +Date: Tue, 9 Nov 2021 17:02:54 +0100 +Subject: [PATCH] Ignore live tests. + + +diff --git a/tests/live.rs b/tests/live.rs +index b1a19fc..6bd4685 100644 +--- a/tests/live.rs ++++ b/tests/live.rs +@@ -140,6 +140,7 @@ fn get_blocker_engine_deserialized_ios() -> Engine { + } + + #[test] ++#[ignore] + fn check_live_specific_urls() { + let mut engine = get_blocker_engine(); + { +@@ -176,6 +177,7 @@ fn check_live_specific_urls() { + } + + #[test] ++#[ignore] + fn check_live_deserialized_specific_urls() { + let mut engine = get_blocker_engine_deserialized(); + { +@@ -201,6 +203,7 @@ fn check_live_deserialized_specific_urls() { + } + + #[test] ++#[ignore] + fn check_live_from_filterlists() { + let engine = get_blocker_engine(); + let requests = load_requests(); +@@ -214,6 +217,7 @@ fn check_live_from_filterlists() { + } + + #[test] ++#[ignore] + fn check_live_deserialized_file() { + let engine = get_blocker_engine_deserialized(); + let requests = load_requests(); +@@ -243,6 +247,7 @@ fn check_live_deserialized_ios() { + + #[cfg(feature = "resource_assembler")] + #[test] ++#[ignore] + fn check_live_redirects() { + use adblock::resources::resource_assembler::assemble_web_accessible_resources; + +@@ -278,6 +283,7 @@ fn check_live_redirects() { + } + + #[test] ++#[ignore] + /// Ensure that two different engines loaded from the same textual filter set serialize to + /// identical buffers. + fn stable_serialization() { +@@ -291,6 +297,7 @@ fn stable_serialization() { + } + + #[test] ++#[ignore] + /// Ensure that one engine's serialization result can be exactly reproduced by another engine after + /// deserializing from it. + fn stable_serialization_through_load() { +-- +2.33.1 + diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index d96ed37375..ea19897ae4 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -1276,7 +1276,7 @@ python-pypdf2 instead.") (define-public pdfarranger (package (name "pdfarranger") - (version "1.7.1") + (version "1.8.0") (source (origin (method git-fetch) @@ -1285,19 +1285,19 @@ python-pypdf2 instead.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1c2mafnz8pv32wzkc2wx4q8y2x7xffpn6ag12dj7ga5n772fb6s3")))) + (base32 "0xfxcwb24rp0kni2b4wdk6fvhqnhd6fh559ag6wdr4sspzkqwdjf")))) (build-system python-build-system) (arguments '(#:tests? #f ;no tests - #:phases (modify-phases %standard-phases - (add-after 'install 'wrap-for-typelib - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (program (string-append out "/bin/pdfarranger"))) - (wrap-program program - `("GI_TYPELIB_PATH" ":" prefix - (,(getenv "GI_TYPELIB_PATH")))) - #t)))))) + #:phases + (modify-phases %standard-phases + (add-after 'install 'wrap-for-typelib + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (program (string-append out "/bin/pdfarranger"))) + (wrap-program program + `("GI_TYPELIB_PATH" ":" prefix + (,(getenv "GI_TYPELIB_PATH")))))))))) (native-inputs `(("intltool" ,intltool) ("python-distutils-extra" ,python-distutils-extra))) diff --git a/gnu/packages/pep.scm b/gnu/packages/pep.scm index dde316e153..7ae77d1776 100644 --- a/gnu/packages/pep.scm +++ b/gnu/packages/pep.scm @@ -241,7 +241,7 @@ ENGINE_INC_PATH=~a/include `(("python-pytest" ,python-pytest) ("python-pytest-forked" ,python-pytest-forked))) (inputs - `(("boost-python" ,boost-with-python3) + `(("boost" ,boost) ("libpepadapter" ,libpepadapter) ("pep-engine" ,pep-engine) ("python-setuptools-scm" ,python-setuptools-scm) diff --git a/gnu/packages/phabricator.scm b/gnu/packages/phabricator.scm index af95cd93d2..ef8a1a7475 100644 --- a/gnu/packages/phabricator.scm +++ b/gnu/packages/phabricator.scm @@ -83,6 +83,3 @@ send code for review, download patches, transfer files, view status, make API calls, and various other things.") ;; Bundled libraries are expat-licensed. (license (list license:asl2.0 license:expat))))) - -(define-public libphutil - (deprecated-package "libphutil" arcanist)) diff --git a/gnu/packages/plotutils.scm b/gnu/packages/plotutils.scm index cb6ac63005..14522491f4 100644 --- a/gnu/packages/plotutils.scm +++ b/gnu/packages/plotutils.scm @@ -137,9 +137,6 @@ using the Cairo drawing library.") (inputs `(("guile" ,guile-2.2))) (propagated-inputs `(("guile-cairo" ,guile2.2-cairo))))) -(define-public guile3.0-charting - (deprecated-package "guile3.0-charting" guile-charting)) - (define-public ploticus (package (name "ploticus") diff --git a/gnu/packages/pretty-print.scm b/gnu/packages/pretty-print.scm index d7a5ddc8e5..a204a90cc9 100644 --- a/gnu/packages/pretty-print.scm +++ b/gnu/packages/pretty-print.scm @@ -168,14 +168,14 @@ different programming languages.") (define-public fmt (package (name "fmt") - (version "7.1.3") + (version "8.0.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/fmtlib/fmt/releases/download/" version "/fmt-" version ".zip")) (sha256 - (base32 "17sc10hfg087z0s774lnn05wwy3bfzmcv7j448p92pr0s02cb62x")))) + (base32 "1gqmsk4r93x65cqs8w7zhfiv70w5fv8279nrblggqm4mmdpaa9x6")))) (build-system cmake-build-system) (arguments '(#:configure-flags '("-DBUILD_SHARED_LIBS=ON"))) @@ -190,6 +190,17 @@ to @code{IOStreams}.") ;; The library is bsd-2, but documentation and tests include other licenses. (license (list bsd-2 bsd-3 psfl)))) +(define-public fmt-7 + (package (inherit fmt) + (version "7.1.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/fmtlib/fmt/releases/download/" + version "/fmt-" version ".zip")) + (sha256 + (base32 "17sc10hfg087z0s774lnn05wwy3bfzmcv7j448p92pr0s02cb62x")))))) + (define-public fmt-for-irods (package (inherit fmt) diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm index 8b8bd67abd..05263499db 100644 --- a/gnu/packages/python-build.scm +++ b/gnu/packages/python-build.scm @@ -321,13 +321,13 @@ order to make bootstrapping easier.") (define-public python-poetry-core (package (name "python-poetry-core") - (version "1.0.3") + (version "1.0.7") (source (origin (method url-fetch) (uri (pypi-uri "poetry-core" version)) (sha256 - (base32 "1ichii48zkywcnj8v3bcn9vk09v69jv6h65805w21hwz4hlcj593")))) + (base32 "01n2rbsvks7snrq3m1d08r3xz9q2715ajb62fdb6rvqnb9sirhcq")))) (build-system python-build-system) (home-page "https://github.com/python-poetry/poetry-core") (synopsis "Poetry PEP 517 build back-end") diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm index cb812762c9..bec6417151 100644 --- a/gnu/packages/python-check.scm +++ b/gnu/packages/python-check.scm @@ -341,21 +341,28 @@ Astropy project, but is optimized for use with astropy-related projects.") (base32 "18j6z6y2fvykmcs5z0mldhhaxxn6wzpnhlm2ps7m8r5z5kmh1631")))) (build-system python-build-system) (arguments - ;; No tests provided - '(#:tests? #f)) + `(#:tests? #f ; there are no tests + #:phases + (modify-phases %standard-phases + ;; There is a bug somewhere that makes pytest-filter-subpackage appear + ;; as version 0.0.0 to setup.py. Remove it from the requirements. + (add-after 'unpack 'remove-requirement + (lambda _ + (substitute* "setup.cfg" + ((".*pytest-filter-subpackage.*") ""))))))) (native-inputs - `(("attrs" ,python-attrs) - ("hypothesis" ,python-hypothesis) - ("pytest" ,python-pytest) - ("pytest-arraydiff" ,python-pytest-arraydiff) - ("pytest-astropy-header" ,python-pytest-astropy-header) - ("pytest-cov" ,python-pytest-cov) - ("pytest-doctestplus" ,python-pytest-doctestplus) - ("pytest-filter-subpackage" ,python-pytest-filter-subpackage) - ("pytest-mock" ,python-pytest-mock) - ("pytest-openfiles" ,python-pytest-openfiles) - ("pytest-remotedata" ,python-pytest-remotedata) - ("setuptools-scm" ,python-setuptools-scm))) + `(("python-attrs" ,python-attrs) + ("python-pytest-mock" ,python-pytest-mock) + ("python-setuptools-scm" ,python-setuptools-scm))) + (propagated-inputs + `(("python-hypothesis" ,python-hypothesis) + ("python-pytest-arraydiff" ,python-pytest-arraydiff) + ("python-pytest-astropy-header" ,python-pytest-astropy-header) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-doctestplus" ,python-pytest-doctestplus) + ("python-pytest-filter-subpackage" ,python-pytest-filter-subpackage) + ("python-pytest-openfiles" ,python-pytest-openfiles) + ("python-pytest-remotedata" ,python-pytest-remotedata))) (home-page "https://github.com/astropy/pytest-astropy") (synopsis "Metapackage for all the testing machinery used by the Astropy Project") diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 7572a8102b..0677843216 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -160,11 +160,12 @@ atlas_libs = openblas ;; within the source directory. (delete 'check) (add-after 'install 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (with-directory-excursion "/tmp" - (invoke "python" "-c" - "import scipy; scipy.test(verbose=2)"))))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (with-directory-excursion "/tmp" + (invoke "python" "-c" + "import scipy; scipy.test(verbose=2)")))))))) (home-page "https://www.scipy.org/") (synopsis "The Scipy library provides efficient numerical routines") (description "The SciPy library is one of the core packages that make up @@ -833,7 +834,7 @@ of Pandas (define-public python-pingouin (package (name "python-pingouin") - (version "0.3.12") + (version "0.5.0") (source ;; The PyPI tarball does not contain the tests. (origin @@ -844,7 +845,7 @@ of Pandas (file-name (git-file-name name version)) (sha256 (base32 - "1ap29x54kdr19vi8qxj9g6cz2r1q4f0z7dcf6g77zwav7hf7r61a")))) + "01aaq023q4bymffrc2wm56af87da32wcvy5d5156i4g7qgvh346r")))) (build-system python-build-system) (arguments `(#:phases diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index d5f4e80a96..f34e352612 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -45,6 +45,7 @@ ;;; Copyright © 2021 Maxime Devos <maximedevos@telenet.be> ;;; Copyright © 2021 Pradana Aumars <paumars@courrier.dev> ;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2021 jgart <jgart@dismail.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -628,14 +629,14 @@ over a different origin than that of the web application.") (define-public python-furl (package (name "python-furl") - (version "2.0.0") + (version "2.1.3") (source (origin (method url-fetch) (uri (pypi-uri "furl" version)) (sha256 (base32 - "1v2lakx03d5w8954a39ki44xv5mllnq0a0avhxykv9hrzg0yvjpx")))) + "0knc76pm8pzigs3bpx9fccfsfxqrgblqphar46hq9i364vz8hqas")))) (build-system python-build-system) (propagated-inputs `(("python-six" ,python-six) @@ -1618,24 +1619,26 @@ choose to use, ensuring that you can communicate via WebSockets, as defined in RFC6455, regardless of your programming paradigm.") (license license:expat))) -(define-public python-hypercorn +(define-public hypercorn (package - (name "python-hypercorn") - (version "0.10.2") + (name "hypercorn") + (version "0.11.2") (source (origin (method url-fetch) (uri (pypi-uri "Hypercorn" version)) (sha256 - (base32 "15dgy47a18w2ls3hwykra1cyf7yzxmfjqnsqml482p12cxr2xwqr")))) + (base32 "16kai5d12f05jr89mj611zslxqri4cd7ixcgd6yhl211qlcyg8av")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-vv")))))) + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + ;; Propagate because Hypercorn also exposes functionality over a module. (propagated-inputs `(("python-h11" ,python-h11) ("python-h2" ,python-h2) @@ -1660,6 +1663,9 @@ WebSockets (over HTTP/1 and HTTP/2), ASGI/2, and ASGI/3 specifications. It can utilise asyncio, uvloop, or trio worker types.") (license license:expat))) +(define-public python-hypercorn + (deprecated-package "python-hypercorn" hypercorn)) + (define-public python-querystring-parser (package (name "python-querystring-parser") @@ -3973,23 +3979,23 @@ authentication for Flask routes.") (define-public python-uritemplate (package (name "python-uritemplate") - (version "3.0.1") + (version "4.1.1") (source (origin (method url-fetch) (uri (pypi-uri "uritemplate" version)) (sha256 (base32 - "1bkwmgr0ia9gcn4bszs2xlvml79f0bi2s4a87xg22ky9rq8avy2s")))) + "1w14a775d92mx9pdhb5zimifpfr2lfcn0vfdpjagcy9vbkyfsij3")))) (build-system python-build-system) (home-page "https://uritemplate.readthedocs.org") (synopsis "Library to deal with URI Templates") (description "@code{uritemplate} provides Python library to deal with URI Templates.") - (license license:bsd-2))) - -(define-public python2-uritemplate - (package-with-python2 python-uritemplate)) + ;; The software is made available under the terms of *either* of the + ;; licenses found in LICENSE.APACHE or LICENSE.BSD. Contributions + ;; are made under *both* licenses (excerpt from the LICENSE file). + (license (list license:bsd-2 license:asl2.0)))) (define-public python-publicsuffix (package @@ -4352,9 +4358,6 @@ Google search engine. Its module is called @code{googlesearch}.") (description "Python client library for Google's discovery based APIs") (license license:asl2.0))) -(define-public python2-google-api-client - (package-with-python2 python-google-api-client)) - (define-public python-hawkauthlib (package (name "python-hawkauthlib") @@ -6014,6 +6017,23 @@ over IMAP: @end itemize") (license license:asl2.0))) +(define-public python-giturlparse + (package + (name "python-giturlparse") + (version "0.10.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "giturlparse" version)) + (sha256 + (base32 "0dxk7sqy8ibaqdl6jzxd0ac1p7shzp4p9f3lhkd7qw9h3llsp595")))) + (build-system python-build-system) + (home-page "https://github.com/nephila/giturlparse") + (synopsis "Git URL parsing module") + (description "This package provides a git URL parsing module which supports +parsing and rewriting of remote git URLs from various hosting providers.") + (license license:asl2.0))) + (define-public python-hstspreload (package (name "python-hstspreload") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 3a85266b4a..4bca271bb5 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1358,6 +1358,27 @@ concepts.") (define-public python2-h5py (package-with-python2 python-h5py)) +(define-public python-hnswlib + (package + (name "python-hnswlib") + (version "0.5.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "hnswlib" version)) + (sha256 + (base32 "0wf1cwmxmdzfqmfhrkqdxb5spf21ylgl2bidswhzjrqhwf35c9qf")))) + (build-system python-build-system) + (propagated-inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + `(("pybind11" ,pybind11))) + (home-page "https://github.com/nmslib/hnswlib") + (synopsis "Fast approximate nearest neighbor search") + (description "Hnswlib is a header-only C++ implementation of fast +approximate nearest neighbor search with Python bindings.") + (license license:asl2.0))) + (define-public python-pyls-black (package (name "python-pyls-black") @@ -1542,6 +1563,35 @@ and simplified. It supports SPDX license expressions as well as other naming conventions and aliases in the same expression.") (license license:gpl2+))) +(define-public python-wand + (package + (name "python-wand") + (version "0.6.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "Wand" version)) + (sha256 + (base32 "1nxn7zvbnfgk4kkxajbzglcjpbgr84ilhnxm990nifjxqb61ph7b")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-magickwand + (lambda* (#:key inputs #:allow-other-keys) + (setenv "MAGICK_HOME" (assoc-ref inputs "imagemagick")) + (setenv "WAND_MAGICK_LIBRARY_SUFFIX" ".Q16")))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (inputs + `(("imagemagick" ,imagemagick))) + (home-page "https://docs.wand-py.org/") + (synopsis "MagickWand API binding for Python") + (description + "Wand is a ctypes-based binding for the C API of ImageMagick's MagickWand +library.") + (license license:expat))) + (define-public python-lockfile (package (name "python-lockfile") @@ -3351,7 +3401,7 @@ with sensible defaults out of the box.") (native-inputs `(("python-pytest-cov" ,python-pytest-cov))) (home-page "https://github.com/mapbox/cligj") - (synopsis "Click params for commmand line interfaces to GeoJSON") + (synopsis "Click params for command line interfaces to GeoJSON") (description "cligj is for Python developers who create command line interfaces for geospatial data. cligj allows you to quickly build consistent, @@ -6570,29 +6620,20 @@ where key might be occurred more than once in the container.") (define-public python-orderedmultidict (package (name "python-orderedmultidict") - (version "1.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (pypi-uri "orderedmultidict" version)) (sha256 (base32 - "1idjbl933avgaadscrjw1np3xkvnz3phq0l8vw5qs0rqcjx9b65q")))) + "1bc2v0yflsxjyyjx4q9wqx0j3bvzcw9z87d5pz4iqac7bsxhn1q4")))) (build-system python-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-tests - (lambda _ - ;; The package uses nosetest for running the tests. - ;; Adding this initfile allows to run the test suite - ;; without requiring nosetest. - (with-output-to-file "tests/__init__.py" newline) - #t))))) (propagated-inputs `(("python-six" ,python-six))) (native-inputs - `(("python-pycodestyle" ,python-pycodestyle))) + `(("python-flake8" ,python-flake8) + ("python-pycodestyle" ,python-pycodestyle))) (home-page "https://github.com/gruns/orderedmultidict") (synopsis "Python Ordered Multivalue Dictionary - omdict") (description "This package contains a library for ordered multivalue @@ -6601,9 +6642,6 @@ multiple values for the same key. An ordered multivalue dictionary is a multivalue dictionary that retains the order of insertions and deletions.") (license license:unlicense))) -(define-public python2-orderedmultidict - (package-with-python2 python-orderedmultidict)) - (define-public python-autopep8 (package (name "python-autopep8") @@ -9623,6 +9661,56 @@ applications.") "PyZMQ is the official Python binding for the ZeroMQ messaging library.") (license license:bsd-4))) +(define-public python-immutabledict + (package + (name "python-immutabledict") + (version "2.2.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "immutabledict" version)) + (sha256 + (base32 "0fpc4gbk7inpfbgdypsg6c18bmdjw8gwx47bjw0hvixn3gghxnqx")))) + (build-system python-build-system) + (arguments + `(#:tests? #f)) ; no tests in PyPI release and no setup.py in GitHub + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/corenting/immutabledict") + (synopsis "Immutable wrapper around dictionaries") + (description + "@dfn{immutabledict} is an immutable wrapper around dictionaries. +It implements the complete mapping interface and can be used as a drop-in +replacement for dictionaries where immutability is desired.") + (license license:expat))) + +(define-public python-emoji + (package + (name "python-emoji") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "emoji" version)) + (sha256 + (base32 "0923mpixwq6hdpkgvi4r46alfvf608iq975rb8lnqpq29j71mmjk")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest"))))))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://github.com/carpedm20/emoji/") + (synopsis "Emoji terminal output for Python") + (description "This package provides Emoji terminal output for Python. The +entire set of Emoji codes as defined by the Unicode Consortium is supported in +addition to a bunch of aliases.") + (license license:bsd-3))) + (define-public python-pep8 ;; This package has been renamed to ‘pycodestyle’ and is no longer updated. ;; Its last release (1.7.1) adds only a scary warning to this effect, breaking @@ -10990,6 +11078,67 @@ your package is installed, via @code{pkg_resources} (part of @code{setuptools}).") (license license:gpl3+))) +(define-public python-filetype + (package + (name "python-filetype") + (version "1.0.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "filetype" version)) + (sha256 + (base32 "05mkinkcn36v1cnb5hzay3zxmv7jmmflckxxp08rgzbkkf3i9pvp")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest" "-k" + (string-append + ;; Both tests fail with FileNotFoundError. + "not test_infer_zip_from_disk" + " and not test_infer_tar_from_disk")))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-benchmark" ,python-pytest-benchmark))) + (home-page "https://github.com/h2non/filetype.py") + (synopsis "Infer file type and MIME type of any file/buffer") + (description "@code{filetype} is a small and dependency free Python +package to infer file type and MIME type checking the magic numbers +signature of a file or buffer.") + (license license:expat))) + +(define-public python-cachelib + (package + (name "python-cachelib") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cachelib" version)) + (sha256 + (base32 "0p4chkvbvffcllsny5rpzmsq2vyr24ql3kzif4ha0fxp3fp7vqk8")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest"))))))) + (native-inputs + `(("python-pytest" ,python-pytest) + ("python-pytest-xprocess" ,python-pytest-xprocess))) + (home-page "https://github.com/pallets/cachelib") + (synopsis "Collection of cache libraries") + (description "Cachelib is a library extracted from @code{werkzeug} which +provides a collection of cache libraries in the same API interface.") + (license license:bsd-3))) + (define-public python-legacy-api-wrap (package (name "python-legacy-api-wrap") @@ -11059,14 +11208,14 @@ suitable for a wide range of protocols based on the ASN.1 specification.") (define-public python-pyasn1-modules (package (name "python-pyasn1-modules") - (version "0.2.2") + (version "0.2.8") (source (origin (method url-fetch) (uri (pypi-uri "pyasn1-modules" version)) (sha256 (base32 - "0ivm850yi7ajjbi8j115qpsj95bgxdsx48nbjzg0zip788c3xkx0")))) + "0pp6dcagd8c2c9qx3lahc1rdwlnmm0y0siqr5icjq2r32b3q8pwh")))) (build-system python-build-system) (propagated-inputs `(("python-pyasn1" ,python-pyasn1))) @@ -15539,7 +15688,7 @@ database, file, dict stores. Cachy supports python versions 2.7+ and 3.2+.") (define-public poetry (package (name "poetry") - (version "1.1.5") + (version "1.1.11") ;; Poetry can only be built from source with Poetry. (source (origin @@ -15547,7 +15696,7 @@ database, file, dict stores. Cachy supports python versions 2.7+ and 3.2+.") (uri (pypi-uri "poetry" version)) (sha256 (base32 - "1dvx08ksv5wnsj45db23921rj136akmcnxa0kmlsddf3wbh6wcka")))) + "17pnf2j4adlm9fhyg5jkkvs8bzcigb6nj72vr0687fxybzsj4zbx")))) (build-system python-build-system) (arguments `(#:tests? #f ;; Pypi does not have tests. @@ -16706,9 +16855,6 @@ Glances uses the PsUtil library to get information from your system. It monitors CPU, load, memory, network bandwidth, disk I/O, disk use, and more.") (license license:lgpl3+))) -(define-public python-glances - (deprecated-package "python-glances" glances)) - (define-public python-graphql-core (package (name "python-graphql-core") @@ -18469,13 +18615,13 @@ current test, while only declaring the test-specific fields") (define-public python-translate-toolkit (package (name "python-translate-toolkit") - (version "2.1.0") + (version "3.5.1") (source (origin (method url-fetch) - (uri (pypi-uri "translate-toolkit" version ".tar.bz2")) + (uri (pypi-uri "translate-toolkit" version ".tar.gz")) (sha256 - (base32 "1vlkwrg83vb17jc36pmwh2b7jphwf390lz0jw8hakcg16qhwypvq")))) + (base32 "020pp7pbpnavxd41z90vyzzx06ci57mx9drkgbsb89wxxx4gal9v")))) (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest) @@ -18503,8 +18649,18 @@ current test, while only declaring the test-specific fields") several utilities, as well as an API for building localization tools.") (license license:gpl2+))) +;; Required for virtaal, newer versions do not build with python2 (define-public python2-translate-toolkit - (package-with-python2 python-translate-toolkit)) + (package-with-python2 + (package + (inherit python-translate-toolkit) + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "translate-toolkit" version ".tar.bz2")) + (sha256 + (base32 "1vlkwrg83vb17jc36pmwh2b7jphwf390lz0jw8hakcg16qhwypvq"))))))) (define-public python-packaging (package/inherit python-packaging-bootstrap @@ -19331,15 +19487,9 @@ many of the popular cloud service providers using a unified API.") window memory map manager.") (license license:bsd-3))) -(define-public python-smmap2 - (deprecated-package "python-smmap2" python-smmap)) - (define-public python2-smmap (package-with-python2 python-smmap)) -(define-public python2-smmap2 - (deprecated-package "python2-smmap2" python2-smmap)) - (define-public python-regex (package (name "python-regex") @@ -27164,6 +27314,137 @@ objects in the combined source, and how they define or use each other. The graph can be output for rendering by GraphViz or yEd.") (license license:gpl2))) +(define-public python-multipledispatch + (package + (name "python-multipledispatch") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "multipledispatch" version)) + (sha256 + (base32 + "1slblghfjg9fdi9zpd7gmrkvfbv20nrdgnrymcnbky8bzm8i9ax7")))) + (build-system python-build-system) + (propagated-inputs `(("python-six" ,python-six))) + (home-page "https://github.com/mrocklin/multipledispatch/") + (synopsis "Multiple dispatch for Python based on pattern matching") + (description "This library provides an efficient mechanism for overloading +function implementations based on the types of the arguments.") + (license license:bsd-3))) + +(define-public python-logical-unification + (package + (name "python-logical-unification") + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "logical-unification" version)) + (sha256 + (base32 + "0j57953hi7kg2rl0163vzjzsvzdyjimnklhx6idf5vaqqf1d3p1j")))) + (build-system python-build-system) + (propagated-inputs + `(("python-multipledispatch" ,python-multipledispatch) + ("python-toolz" ,python-toolz))) + (home-page "https://github.com/pythological/unification/") + (synopsis "Logical unification in Python for solving symbolic expressions") + (description "This library provides algorithms and data types for solving +symbolic expressions in pure Python using the technique of logical unification.") + (license license:bsd-3))) + +(define-public python-cons + (package + (name "python-cons") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "cons" version)) + (sha256 + (base32 + "0w9giq196wps7mbm47c4shdzs5yvwvqajqzkim2p92i51sm5qgvm")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest-6) + ("python-toml" ,python-toml))) + (propagated-inputs + `(("python-logical-unification" ,python-logical-unification))) + (home-page "https://github.com/pythological/python-cons") + (synopsis "Cons cell data structures and related algorithms for Python") + (description + "This library implements algorithms and data structures for Lisp-style +cons cells in Python.") + (license license:lgpl3+))) + +(define-public python-etuples + (package + (name "python-etuples") + (version "0.3.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "etuples" version)) + (sha256 + (base32 + "0jhfyp177v37rl0i7wqfx7q6s5qkz027hl283d1x8d0vm3w0zqc8")))) + (build-system python-build-system) + (propagated-inputs + `(("python-cons" ,python-cons) + ("python-multipledispatch" ,python-multipledispatch))) + (home-page "https://github.com/pythological/etuples") + (synopsis "S-expressions in Python") + (description + "This library implements eval'able S-expression in Python using tuple-like objects.") + (license license:asl2.0))) + +(define-public python-minikanren + (package + (name "python-minikanren") + (version "1.0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pythological/kanren") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0g7wfj5hxalwz7k1301nsjqhjpzsif1bj6wjm2x2kavlm2ypv9jc")))) + (build-system python-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python" "-m" "pytest" "-v" "tests/" "kanren/")) + #t))))) + (native-inputs + `(("python-coveralls" ,python-coveralls) + ("python-pydocstyle" ,python-pydocstyle) + ("python-pytest" ,python-pytest) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pylint" ,python-pylint) + ("python-black" ,python-black) + ("python-sympy" ,python-sympy) + ("python-versioneer" ,python-versioneer) + ("python-coverage" ,python-coverage) + ("python-pre-commit" ,python-pre-commit))) + (propagated-inputs + `(("python-toolz" ,python-toolz) + ("python-cons" ,python-cons) + ("python-multipledispatch" ,python-multipledispatch) + ("python-etuples" ,python-etuples) + ("python-logical-unification" ,python-logical-unification))) + (home-page "https://github.com/pythological/kanren") + (synopsis "Relational logic programming in pure Python") + (description + "The minikanren library provides an algorithmic core for computer algebra +systems in Python.") + (license license:bsd-3))) + + (define-public date2name (let ((commit "6c8f37277e8ec82aa50f90b8921422be30c4e798") (revision "1")) @@ -27617,3 +27898,27 @@ simple mock/record and a complete capture/replay framework.") "Ijson is an iterative JSON parser with standard Python iterator interfaces.") (license license:bsd-3))) + +(define-public python-sgmllib3k + (package + (name "python-sgmllib3k") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "sgmllib3k" version)) + (sha256 + (base32 "1s8jm3dgqabgf8x96931scji679qkhvczlv3qld4qxpsicfgns3q")))) + (build-system python-build-system) + ;; Requires a test.html input that is not supplied + (arguments + `(#:tests? #f)) + (home-page "https://pypi.org/project/sgmllib3k/") + ;; Actual homepage seems to be down + ;; (home-page "https://hg.hardcoded.net/sgmllib") + (synopsis "Python 3 port of sgmllib") + (description + "This packages provides an unmaintained port of sgmllib to Python 3. +It is used to parse text files formatted in @acronym{SGML,Standard Generalized +Mark-up Language}.") + (license license:bsd-3))) diff --git a/gnu/packages/samba.scm b/gnu/packages/samba.scm index fad2888f03..966ccc8c17 100644 --- a/gnu/packages/samba.scm +++ b/gnu/packages/samba.scm @@ -184,14 +184,14 @@ external dependencies.") (define-public samba (package (name "samba") - (version "4.13.10") + (version "4.13.14") (source (origin (method url-fetch) (uri (string-append "https://download.samba.org/pub/samba/stable/" "samba-" version ".tar.gz")) (sha256 - (base32 "00q5hf2r71dyma785dckcyksv3082mqfgyy9q6k6rc6kqjwkirzh")) + (base32 "103zy09mszjlfrsnm2vzrw5d9ph5jckddb9cxsrhrslkzblah4b6")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/scanner.scm b/gnu/packages/scanner.scm index 00d094cc4b..9d4abe88c6 100644 --- a/gnu/packages/scanner.scm +++ b/gnu/packages/scanner.scm @@ -240,7 +240,7 @@ package contains the library and drivers."))) ("zlib" ,zlib))) (home-page "https://scanbd.sourceforge.io") (synopsis "Configurable scanner button monitor") - (description "Scanbd stands for scanner button daemon. It regulary polls + (description "Scanbd stands for scanner button daemon. It regularly polls scanners for pressed buttons, function knob changes, or other events such as (un)plugging the scanner or inserting and removing paper. Then it performs the desired action(s) such as saving, copying, or e-mailing the image. diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index 14b21e644f..8c5e5f7cdf 100644 --- a/gnu/packages/search.scm +++ b/gnu/packages/search.scm @@ -444,14 +444,14 @@ conflict with slocate compatibility.") (define-public plocate (package (name "plocate") - (version "1.1.12") + (version "1.1.13") (source (origin (method url-fetch) (uri (string-append "https://plocate.sesse.net/download/" "plocate-" version ".tar.gz")) (sha256 - (base32 "1damwm8kqf797kgr1cify521i6icz5khc5brq16m6nlg26nja7d1")))) + (base32 "16lpiirjmj4mrdj5kkjv7rikkgjx3i64ac0sl3lz1rshflhxgqww")))) (build-system meson-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm index 729269e5e5..25ae0d8fe3 100644 --- a/gnu/packages/shells.scm +++ b/gnu/packages/shells.scm @@ -881,9 +881,6 @@ scripts.") (license (list license:psfl ; tarball includes python2.7 license:asl2.0)))) -(define-public oil-shell - (deprecated-package "oil-shell" oil)) - (define-public gash (package (name "gash") diff --git a/gnu/packages/shellutils.scm b/gnu/packages/shellutils.scm index 6e64cee1da..70443f5019 100644 --- a/gnu/packages/shellutils.scm +++ b/gnu/packages/shellutils.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2021 Alexandr Vityazev <avityazev@posteo.org> ;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz> ;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com> +;;; Copyright © 2021 Wiktor Żelazny <wzelazny@vurv.cz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -512,3 +513,31 @@ real person, and are too lazy to think of one yourself. Also, if the Web site/BBS/person you are giving the information to tries to cross-check the city, state, zip, or area code, it will check out.") (license license:gpl2+))) + +(define-public renameutils + (package + (name "renameutils") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://savannah/renameutils/" + "renameutils-" version ".tar.gz")) + (sha256 + (base32 + "18xlkr56jdyajjihcmfqlyyanzyiqqlzbhrm6695mkvw081g1lnb")) + (modules '((guix build utils))) + (snippet '(begin + (substitute* "src/Makefile.in" + (("\\(\\$bindir\\)") "$(bindir)")) + #t)))) + (build-system gnu-build-system) + (inputs + `(("readline" ,readline))) + (home-page "https://www.nongnu.org/renameutils/") + (synopsis "File renaming utilities") + (description "The file renaming utilities (renameutils for short) are a +set of programs designed to make renaming of files faster and less cumbersome. +The file renaming utilities consists of five programs: @command{qmv}, +@command{qcp}, @command{imv}, @command{icp}, and @command{deurlname}.") + (license license:gpl3+))) diff --git a/gnu/packages/sqlite.scm b/gnu/packages/sqlite.scm index 934c7c6918..7afa97eb7c 100644 --- a/gnu/packages/sqlite.scm +++ b/gnu/packages/sqlite.scm @@ -118,9 +118,4 @@ is in the public domain.") (uri (sqlite-uri version 2020)) (sha256 (base32 - "05dvdfaxd552gj5p7k0i72sfam7lykaw1g2pfn52jnppqx42qshh")))))) - -;; Column metadata support was added to the regular 'sqlite' package with -;; commit fad5b1a6d8d9c36bea5785ae4fbc1beb37e644d7. -(define-public sqlite-with-column-metadata - (deprecated-package "sqlite-with-column-metadata" sqlite)) + "0rlbaq177gcgk5dswd3akbhv2nvvzljrbhgy18hklbhw7h90f5d3")))))) diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm index 7452b5f7a1..c6de2736e3 100644 --- a/gnu/packages/ssh.scm +++ b/gnu/packages/ssh.scm @@ -404,9 +404,6 @@ libssh library.") (inputs `(("guile" ,guile-2.2) ,@(alist-delete "guile" (package-inputs guile-ssh)))))) -(define-public guile3.0-ssh - (deprecated-package "guile3.0-ssh" guile-ssh)) - (define-public corkscrew ;; The last 2.0 release hails from 2009. Use a fork (submitted upstream as ;; <https://github.com/patpadgett/corkscrew/pull/5>) that adds now-essential diff --git a/gnu/packages/task-management.scm b/gnu/packages/task-management.scm index 49b9bce370..7e5044f173 100644 --- a/gnu/packages/task-management.scm +++ b/gnu/packages/task-management.scm @@ -115,14 +115,14 @@ to finish tasks, not organize them.") (define-public taskwarrior (package (name "taskwarrior") - (version "2.5.3") + (version "2.6.1") (source (origin (method url-fetch) (uri (string-append "http://taskwarrior.org/download/task-" version ".tar.gz")) (sha256 (base32 - "0fwnxshhlha21hlgg5z1ad01w13zm1hlmncs274y5n8i15gdfhvj")))) + "0kq8n2y4srax48yp7shz7ngac0q75dnvdbr9z9f9ldyqncr61ah0")))) (build-system cmake-build-system) (inputs `(("gnutls" ,gnutls) diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 971b506237..79d7af42ad 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -23,11 +23,13 @@ ;;; Copyright © 2020, 2021 Marius Bakke <marius@gnu.org> ;;; Copyright © 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Leo Famulari <leo@famulari.name> +;;; Copyright @ 2020 luhux <luhux@outlook.com> ;;; Copyright © 2021 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; Copyright © 2021 Raphaël Mélotte <raphael.melotte@mind.be> ;;; Copyright © 2021 ikasero <ahmed@ikasero.com> ;;; Copyright © 2021 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2021 Solene Rapenne <solene@perso.pw> +;;; Copyright © 2021 Petr Hodina <phodina@protonmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -423,6 +425,64 @@ character sets and encodings from around the world. It can display double-width Vietnamese, and bi-directional scripts like Arabic and Hebrew.") (license license:bsd-3))) +(define-public mtm + (package + (name "mtm") + (version "1.2.1") + (source + (origin + (uri (git-reference + (url "https://github.com/deadpixi/mtm") + (commit version))) + (method git-fetch) + (sha256 + (base32 "0gibrvah059z37jvn1qs4b6kvd4ivk2mfihmcpgx1vz6yg70zghv")) + (file-name (git-file-name name version)))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; no tests + #:make-flags + (list (string-append "CC=" ,(cc-for-target)) + (string-append "DESTDIR=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (delete 'configure) ;no configure script + (add-before 'build 'fix-headers + (lambda _ + (substitute* "config.def.h" + (("ncursesw/curses.h") "curses.h")))) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out"))) + ;; install binary + (mkdir-p (string-append out "bin/")) + (install-file "mtm" (string-append out "/bin")) + ;; install manpage + (mkdir-p (string-append out "share/man/man1")) + (install-file "mtm.1" (string-append out "/share/man/man1")) + ;; install terminfo + (mkdir-p (string-append out "share/terminfo")) + (invoke (string-append (assoc-ref inputs "ncurses") "/bin/tic") + "-x" "-s" "-o" + (string-append + out "/share/terminfo") + "mtm.ti"))))))) + (inputs + `(("ncurses" ,ncurses))) + ;; FIXME: This should only be located in 'ncurses'. Nonetheless it is + ;; provided for usability reasons. See <https://bugs.gnu.org/22138>. + (native-search-paths + (list (search-path-specification + (variable "TERMINFO_DIRS") + (files '("share/terminfo"))))) + (home-page "https://github.com/deadpixi/mtm") + (synopsis "Micro Terminal Multiplexer") + (description + "This package provides multiplexer for the terminal focused on simplicity, +compatibility, size and stability.") + (license (list license:gpl3+ + license:bsd-3)))) ;vtparser.c + (define-public picocom (package (name "picocom") @@ -1223,9 +1283,6 @@ while also supporting native scrolling and @command{tmux} control mode (@code{tmux -CC}).") (license license:asl2.0))) -(define-public et - (deprecated-package "et" eternalterminal)) - (define-public wterm (package (name "wterm") diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index d563019a09..0c6304aa99 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -4526,6 +4526,31 @@ paragraphs. The package also enables typesetting with hanging punctuation, by making punctuation characters active.") (license license:lppl1.3c+))) +(define-public texlive-fira + (package + (inherit (simple-texlive-package + "texlive-fira" + (list "doc/fonts/fira/" + "tex/latex/fira/" + "fonts/vf/public/fira/" + "fonts/type1/public/fira/" + "fonts/tfm/public/fira/" + "fonts/opentype/public/fira/" + "fonts/map/dvips/fira/" + "fonts/enc/dvips/fira/") + (base32 "0mxrwwf8i383vrs64lsyiwnai4cy305pkv1kgd4nrhmgi7pdc3ac") + #:trivial? #t)) + (build-system texlive-build-system) + (home-page "https://ctan.org/fonts/fira") + (synopsis "Fira fonts with LaTeX support") + (description + "This package provides LaTeX, pdfLaTeX, XeLaTeX and LuaLaTeX support for +the Fira Sans family of fonts designed by Erik Spiekermann and Ralph du +Carrois of Carrois Type Design. Fira Sans is available in eleven weights with +corresponding italics: light, regular, medium, bold, ...") + (license (list license:lppl + license:silofl1.1)))) + (define-public texlive-latex-ifplatform (package (name "texlive-latex-ifplatform") @@ -9580,6 +9605,32 @@ an arbitrary point. Various options allow complete control over spacing, styles of inference rules, placement of labels, etc.") (license license:lppl1.3+))) +(define-public texlive-latex-bussproofs + (let ((template (simple-texlive-package + "texlive-latex-bussproofs" + (list "/doc/latex/bussproofs/" + "/tex/latex/bussproofs/") + (base32 + "1gb8y9g89fqw1kix4d2vb7mj440vlb8hnpsa3jqpk9yicndwcyk6")))) + (package + (inherit template) + (arguments + (substitute-keyword-arguments (package-arguments template) + ((#:tex-directory _ '()) + "latex/bussproofs") + ((#:build-targets _ '()) + ''()) ; "bussproofs.sty" + ((#:phases phases) + `(modify-phases ,phases + (add-after 'unpack 'chdir + (lambda _ (chdir "tex/latex/bussproofs"))))))) + (home-page "https://www.math.ucsd.edu/~sbuss/ResearchWeb/bussproofs/index.html") + (synopsis "Formal proofs in the style of sequent calculus") + (description + "This package provides commands to typeset proof trees in the style of +sequent calculus and related systems.") + (license license:lppl1.3+)))) + (define-public texlive-eurosym (let ((template (simple-texlive-package "texlive-eurosym" @@ -9634,6 +9685,73 @@ are valid as arguments for the macros. The package may be used under LaTeX and plain TeX.") (license (license:fsf-free "file:/binhex.dtx")))) +(define-public texlive-translator + (package + (inherit (simple-texlive-package + "texlive-translator" + (list "doc/latex/translator/" + "tex/latex/translator/") + (base32 + "1pac03qghaw9q98skfrgzgk4wnz04pgizw59c4k5ydphw1vpsvcz") + #:trivial? #t)) + (build-system texlive-build-system) + (home-page "https://ctan.org/macros/latex/contrib/translator") + (synopsis "Easy translation of strings in LaTeX") + (description + "This LaTeX package provides a flexible mechanism for translating +individual words into different languages. For example, it can be used to +translate a word like \"figure\" into, say, the German word \"Abbildung\". +Such a translation mechanism is useful when the author of some package would +like to localize the package such that texts are correctly translated into the +language preferred by the user. This package is not intended to be used to +automatically translate more than a few words.") + (license (list license:lppl license:gpl1+)))) + +(define-public texlive-latex-textpos + (package + (inherit (simple-texlive-package + "texlive-latex-textpos" + (list "doc/latex/textpos/" + "tex/latex/textpos/") + (base32 + "1g208dx853xg7g72jggkh13934r49yypksvalm5pk6snh0s0k86c") + #:trivial? #t)) + (build-system texlive-build-system) + (home-page "https://ctan.org/pkg/textpos") + (synopsis "Absolute positioning of text on the LaTeX page") + (description + "This package facilitates placing boxes at absolute positions on the +LaTeX page. There are several reasons why this might be useful, but the main +one (or at least my motivating one) is to help produce a large-format +conference poster. + +This package provides a single environment, plus a starred variant, which +contains the text (or graphics, or table, or whatever) which is to be placed +on the page, and which specifies where it is to be placed. The environment is +accompanied by various configuration commands.") + (license license:lppl))) + +(define-public texlive-xifthen + (package + (inherit (simple-texlive-package + "texlive-xifthen" + (list "doc/latex/xifthen/" + "tex/latex/xifthen/") + (base32 + "0b33mlmnxsj5mi06v2w2zgamk51mgv1lxdr1cax8nkpn9g7n9axw") + #:trivial? #t)) + (build-system texlive-build-system) + (home-page "https://ctan.org/pkg/xifthen") + (synopsis "Extended conditional commands") + (description + "This package extends the @code{ifthen} package by implementing new +commands to go within the first argument of @code{\\\\ifthenelse}: to test +whether a string is void or not, if a command is defined or equivalent to +another. The package also enables use of complex expressions as introduced by +the package @code{calc}, together with the ability of defining new commands to +handle complex tests.") + (license license:lppl))) + (define-public bibtool (package (name "bibtool") diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm index be8f7a4a12..a93621fa93 100644 --- a/gnu/packages/tls.scm +++ b/gnu/packages/tls.scm @@ -351,9 +351,6 @@ required structures.") ,@(alist-delete "guile" (package-inputs gnutls)))))) -(define-public guile3.0-gnutls - (deprecated-package "guile3.0-gnutls" gnutls)) - (define (target->openssl-target target) "Return the value to set CONFIGURE_TARGET_ARCH to when cross-compiling OpenSSL for TARGET." @@ -662,13 +659,13 @@ netcat implementation that supports TLS.") (package (name "python-acme") ;; Remember to update the hash of certbot when updating python-acme. - (version "1.17.0") + (version "1.18.0") (source (origin (method url-fetch) (uri (pypi-uri "acme" version)) (sha256 (base32 - "03ij1wp7jwvppv70qbjkgdg7w824yh6j4gfb68jj20wicx08xx1a")))) + "1bv2swaqmzpcx2nq1nbhrc6b825d5sxkdv0al972sjfcpcqn1q4s")))) (build-system python-build-system) (arguments `(#:phases @@ -716,7 +713,7 @@ netcat implementation that supports TLS.") (uri (pypi-uri "certbot" version)) (sha256 (base32 - "0wyipx6q78fmvngf1i6g50s01qpjqh07qlk1b5vyxwgl3080lhgg")))) + "0yr8sxfg5zspal04l9lpd9xis6gp8il20bhka54xr9bb4hc6xrgk")))) (build-system python-build-system) (arguments `(,@(substitute-keyword-arguments (package-arguments python-acme) @@ -1142,39 +1139,38 @@ derived from Mozilla's collection.") (license license:mpl2.0)))) (define-public s2n - (let* ((commit "7f43b102def1d52422f6c3e48d5cb3e6dd26c646") - (revision "1")) - (package - (name "s2n") - (version (git-version "1.0.10" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/aws/s2n-tls") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "06rqg0vcispi63cmcza9j7ix80l0w6wmbw81qlg4fq8l1lg9nyvl")))) - (build-system cmake-build-system) - (arguments - '(#:configure-flags - '("-DBUILD_SHARED_LIBS=ON"))) - (propagated-inputs - `(("openssl" ,openssl) - ("openssl:static" ,openssl "static"))) - (synopsis "SSL/TLS implementation in C99") - (description - "This library provides a C99 implementation of SSL/TLS. It is designed -to be familiar to users of the widely-used POSIX I/O APIs. It supports -blocking, non-blocking, and full-duplex I/O. There are no locks or mutexes. + (package + (name "s2n") + ; Update only when updating aws-crt-cpp. + (version "1.1.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aws/s2n-tls") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "14dhdddlph36nshdkh0v33718hxjx5vxqxmkw7707393q0qrgipw")))) + (build-system cmake-build-system) + (arguments + '(#:configure-flags + '("-DBUILD_SHARED_LIBS=ON"))) + (propagated-inputs + `(("openssl" ,openssl) + ("openssl:static" ,openssl "static"))) + (synopsis "SSL/TLS implementation in C99") + (description + "This library provides a C99 implementation of SSL/TLS. It is designed to +be familiar to users of the widely-used POSIX I/O APIs. It supports blocking, +non-blocking, and full-duplex I/O. There are no locks or mutexes. As it can be difficult to keep track of which encryption algorithms and protocols are best to use, s2n-tls features a simple API to use the latest default set of preferences. Remaining on a specific version for backwards compatibility is also supported.") (home-page "https://github.com/aws/s2n-tls") - (license license:asl2.0)))) + (license license:asl2.0))) (define-public wolfssl (package diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index ab36625aba..8b879d7dd5 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2013, 2014 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2016 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org> -;;; Copyright © 2014, 2016, 2019 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2014, 2016, 2019, 2021 Eric Bavier <bavier@posteo.net> ;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2015, 2018, 2020, 2021 Kyle Meyer <kyle@kyleam.com> ;;; Copyright © 2015, 2017, 2018, 2020 Ricardo Wurmus <rekado@elephly.net> @@ -113,6 +113,7 @@ #:use-module (gnu packages python) #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) + #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages readline) @@ -172,6 +173,43 @@ changes to project files over time. It supports both a distributed workflow as well as the classic centralized workflow.") (license license:gpl2+))) +(define-public breezy + (package + (name "breezy") + (version "3.2.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://launchpad.net/brz/" + (version-major+minor version) "/" version + "/+download/breezy-" version ".tar.gz")) + (sha256 + (base32 + "0p6q545xpmxa6fgvkjglfpqpybg33817vhw0a82az8i83bmnicp0")))) + (build-system python-build-system) + ;; TODO: Maybe regenerate C files with Cython? + (inputs + `(("gettext" ,gettext-minimal) + ("python-configobj" ,python-configobj) + ("python-dulwich" ,python-dulwich) + ("python-fastimport" ,python-fastimport) + ("python-paramiko" ,python-paramiko) + ("python-patiencediff" ,python-patiencediff) + ("python-pycryptodome" ,python-pycryptodome) + ("python-pygpgme" ,python-pygpgme))) + (arguments + `(#:tests? #f)) ; no tests in release tarball + (home-page "https://www.breezy-vcs.org/") + (synopsis "Decentralized revision control system") + (description + "Breezy (@command{brz}) is a decentralized revision control system. By +default, Breezy provides support for both the +@uref{https://www.bazaar-vcs.org, Bazaar} and @uref{https://www.git-scm.com, +Git} file formats. Breezy is backwards compatible with Bazaar's disk format +and protocols. One of the key differences with Bazaar is that Breezy runs on +Python 3.3 and later, rather than on Python 2.") + (license license:gpl2+))) + (define git-cross-configure-flags '("ac_cv_fread_reads_directories=yes" "ac_cv_snprintf_returns_bogus=no" @@ -180,14 +218,14 @@ as well as the classic centralized workflow.") (define-public git (package (name "git") - (version "2.33.1") + (version "2.34.0") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/software/scm/git/git-" version ".tar.xz")) (sha256 (base32 - "0bqz401dyp8wnjj3k5ahrniwk4dalndysqazzwdvv25hqbkacm70")))) + "07s1c9lzlm4kpbb5lmxy0869phg7037pv4faz5hlqyb5csrbjv7x")))) (build-system gnu-build-system) (native-inputs `(("native-perl" ,perl) @@ -207,7 +245,7 @@ as well as the classic centralized workflow.") version ".tar.xz")) (sha256 (base32 - "11xb0n1ckkm2g7r3sxsknkhsak739xg925zbz3aalv7mr7qijln7")))) + "0wic95h0i1bm66hxnc38pfj31n74lvk2xb8lx6kcfpzg2wszmsj7")))) ;; For subtree documentation. ("asciidoc" ,asciidoc) ("docbook-xsl" ,docbook-xsl) @@ -2635,25 +2673,27 @@ a built-in wiki, built-in file browsing, built-in tickets system, etc.") (define-public stagit (package (name "stagit") - (version "0.7.2") + (version "0.9.6") (source (origin - (method url-fetch) - (uri (string-append "https://dl.2f30.org/releases/" - name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "git://git.codemadness.org/stagit") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "1m3s9g1z9szbjrhm8sic91xh6f2bfpi56rskdkqd5wc4wdycpyi5")))) + "0hcf1rmsp9s6jjg1dypq7sa3dqmqg2q3x1kj23rb5gwrsb31vyfj")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; No tests - #:make-flags (list "CC=gcc" + #:make-flags (list (string-append "CC=" ,(cc-for-target)) (string-append "PREFIX=" %output)) #:phases (modify-phases %standard-phases (delete 'configure)))) ; No configure script (inputs `(("libgit2" ,libgit2))) - (home-page "https://2f30.org/") + (home-page "https://git.codemadness.org/stagit/") (synopsis "Static git page generator") (description "Stagit creates static pages for git repositories, the results can be served with a HTTP file server of your choice.") @@ -2986,7 +3026,7 @@ for historians.") (define-public diff-so-fancy (package (name "diff-so-fancy") - (version "1.3.0") + (version "1.4.2") (source (origin (method git-fetch) (uri (git-reference @@ -2995,7 +3035,7 @@ for historians.") (file-name (git-file-name name version)) (sha256 (base32 - "0aavxahzha2mms4vdwysk79pa6wzswpfwgsq2hwaxnaf66maahfl")))) + "0q0byg2bpibl3lbn4zibwcfxzlx2x5krajxmpwgizf32qjp5lh6n")))) (inputs `(("perl" ,perl) ("ncurses" ,ncurses))) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index f66d4e9c6f..c8c1790e73 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -829,7 +829,7 @@ television and DVD. It is also known as AC-3.") (define-public libaom (package (name "libaom") - (version "3.1.3") + (version "3.2.0") (source (origin (method git-fetch) (uri (git-reference @@ -838,7 +838,7 @@ television and DVD. It is also known as AC-3.") (file-name (git-file-name name version)) (sha256 (base32 - "08rk31d2cp9k9nj37s6a4n7klpfqfbj62anwyiggzsz7b68psjq3")))) + "0fmnbzpl481i7kchx4hbvb507r5pfgyrzfrlrs7jk3bicycm75qv")))) (build-system cmake-build-system) (native-inputs `(("perl" ,perl) @@ -1513,14 +1513,14 @@ operate properly.") (define-public ffmpeg (package (name "ffmpeg") - (version "4.4") + (version "4.4.1") (source (origin (method url-fetch) (uri (string-append "https://ffmpeg.org/releases/ffmpeg-" version ".tar.xz")) (sha256 (base32 - "02fr8mvf2agwmyb9q2bmh9p09gpz3xxmpcbbbj8iydz57hc0mc86")))) + "00hfwd8ld6jnd26pl9f0wcd2mag4zacxxgqgabsja2xkkagavnza")))) (build-system gnu-build-system) (inputs `(("dav1d" ,dav1d) @@ -1707,14 +1707,14 @@ audio/video codec library.") (define-public ffmpeg-3.4 (package (inherit ffmpeg) - (version "3.4.7") + (version "3.4.9") (source (origin (method url-fetch) (uri (string-append "https://ffmpeg.org/releases/ffmpeg-" version ".tar.xz")) (sha256 (base32 - "1j7mdk9szrljgv4sdx69bm1pnbb3cldbdxbkr42jbdi9zn11gl7g")))) + "0d8nkd9c85rkjlgsq1hidmykkrksi883ygqzhhj6wh4nqflv8vs9")))) (arguments (substitute-keyword-arguments (package-arguments ffmpeg) ((#:modules modules %gnu-build-system-modules) @@ -1734,14 +1734,14 @@ audio/video codec library.") (define-public ffmpeg-2.8 (package (inherit ffmpeg) - (version "2.8.16") + (version "2.8.18") (source (origin (method url-fetch) (uri (string-append "https://ffmpeg.org/releases/ffmpeg-" version ".tar.xz")) (sha256 (base32 - "14n0xg22yz1r4apif2idm91s3avcmkz4sl8gyj5763gcy415k2bb")))) + "0k6dq7b8rpjvdl5ncf1135qwc36x0x9va8v83aggvbfhy5d97vwn")))) (arguments `(#:tests? #f ; XXX: Enable them later, if required #:configure-flags diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index d2fefe4fb1..4eacbed224 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -440,7 +440,7 @@ server and embedded PowerPC, and S390 guests.") (define-public libx86emu (package (name "libx86emu") - (version "3.1") + (version "3.4") (home-page "https://github.com/wfeldt/libx86emu") (source (origin @@ -460,10 +460,9 @@ server and embedded PowerPC, and S390 guests.") (substitute* "Makefile" (("GIT2LOG.*=.*$") "") (("GITDEPS.*=.*$") "") - (("BRANCH.*=.*$") "")) - #t)) + (("BRANCH.*=.*$") "")))) (sha256 - (base32 "104xqc6nj9rpi7knl3dfqvasf087hlz2n5yndb1iycw35a6j509b")))) + (base32 "0f8mwpgfyid26i9q77n2rlcr4zzc75jnjzmy2hc38gk3q71ijmwh")))) (build-system gnu-build-system) (arguments `(#:test-target "test" diff --git a/gnu/packages/vlang.scm b/gnu/packages/vlang.scm index e0b2e7bcfc..def858da17 100644 --- a/gnu/packages/vlang.scm +++ b/gnu/packages/vlang.scm @@ -134,7 +134,3 @@ "V is a systems programming language. It provides memory safety and thread safety guarantees with minimal abstraction.") (license license:expat))) - -(define-public v - ;; We used to provide 'vlang' under the name 'v'. - (deprecated-package "v" vlang)) diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm index 67ef4a4ae9..99277657e8 100644 --- a/gnu/packages/vpn.scm +++ b/gnu/packages/vpn.scm @@ -1089,9 +1089,6 @@ public keys and can roam across IP addresses.") (list license:lgpl2.1+ ; src/netlink.h & contrib/embeddable-wg-library license:gpl2)))) ; everything else -(define-public wireguard - (deprecated-package "wireguard" wireguard-tools)) - (define-public xl2tpd (package (name "xl2tpd") diff --git a/gnu/packages/web-browsers.scm b/gnu/packages/web-browsers.scm index 35e8db7e91..3b495b8978 100644 --- a/gnu/packages/web-browsers.scm +++ b/gnu/packages/web-browsers.scm @@ -690,16 +690,10 @@ for power users. Conceptually inspired by Emacs and Vim, it has familiar key-bindings (Emacs, vi, CUA), and is fully configurable in Common Lisp.") (license license:bsd-3))) -(define-public next - (deprecated-package "next" nyxt)) - -(define-public sbcl-next - (deprecated-package "sbcl-next" nyxt)) - (define-public lagrange (package (name "lagrange") - (version "1.7.2") + (version "1.8.2") (source (origin (method url-fetch) @@ -707,13 +701,20 @@ key-bindings (Emacs, vi, CUA), and is fully configurable in Common Lisp.") (string-append "https://git.skyjake.fi/skyjake/lagrange/releases/" "download/v" version "/lagrange-" version ".tar.gz")) (sha256 - (base32 "1fr7p0pjli9clsgr0a1fp1pr119r9zqx43dvhc1g91bj742mxhfa")))) + (base32 "1wb4gqn32sja2qik04chlcl743arr6c844zczy1a2aad5103cnip")) + (modules '((guix build utils))) + (snippet + '(begin + ;; TODO: unbundle fonts. + (delete-file-recursively "lib/fribidi") + (delete-file-recursively "lib/harfbuzz"))))) (build-system cmake-build-system) (arguments `(#:tests? #false ;no tests #:configure-flags (list "-DTFDN_ENABLE_SSE41=OFF"))) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("pkg-config" ,pkg-config) + ("zip" ,zip))) (inputs `(("fribidi" ,fribidi) ("harfbuzz" ,harfbuzz) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 940689b4bf..ecb6d68cc1 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -7679,7 +7679,7 @@ compressed JSON header blocks. (define-public hpcguix-web (package (name "hpcguix-web") - (version "0.1.0") + (version "0.2.0") (source (origin (method git-fetch) (uri (git-reference @@ -7688,7 +7688,7 @@ compressed JSON header blocks. (file-name (git-file-name name version)) (sha256 (base32 - "02lz5k1hhkwfz3nr3lsd69icsz6n0q82z047d3svi09qpxw6y0cj")))) + "1l856d1vr63ns1sp9fm6v97p71mx00769k6lwzqzppsb9clksnwp")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build gnu-build-system) @@ -7712,9 +7712,10 @@ compressed JSON header blocks. (git (assoc-ref inputs "guile-git")) (bs (assoc-ref inputs "guile-bytestructures")) (json (assoc-ref inputs "guile-json")) + (zlib (assoc-ref inputs "guile-zlib")) (guile-cm (assoc-ref inputs "guile-commonmark")) - (deps (list guile gcrypt git bs guile-cm guix json)) + (deps (list guile gcrypt git bs zlib guile-cm guix json)) (effective (read-line (open-pipe* OPEN_READ @@ -7739,15 +7740,15 @@ compressed JSON header blocks. `(("autoconf" ,autoconf) ("automake" ,automake) ("uglify-js" ,uglify-js) - ("pkg-config" ,pkg-config))) + ("pkg-config" ,pkg-config) + ("guile" ,@(assoc-ref (package-native-inputs guix) "guile")))) (inputs `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile")) ("guix" ,guix) - ("bash-minimal" ,bash-minimal))) ;for 'wrap-program' - (propagated-inputs - `(("guile" ,@(assoc-ref (package-native-inputs guix) "guile")) + ("guile-zlib" ,guile-zlib) ("guile-commonmark" ,guile-commonmark) - ("guile-json" ,guile-json-4))) + ("guile-json" ,guile-json-4) + ("bash-minimal" ,bash-minimal))) (home-page "https://github.com/UMCUGenetics/hpcguix-web") (synopsis "Web interface for cluster deployments of Guix") (description "Hpcguix-web provides a web interface to the list of packages diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index e19a08da47..7b7d04eb93 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -1679,7 +1679,7 @@ display a clock or apply image manipulation techniques to the background image." (define-public waybar (package (name "waybar") - (version "0.9.7") + (version "0.9.8") (source (origin (method git-fetch) @@ -1688,7 +1688,7 @@ display a clock or apply image manipulation techniques to the background image." (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "17cn4d3dx92v40jd9vl41smp8hh3gf5chd1j2f7l1lrpfpnllg5x")))) + (base32 "109a49f064ma5js2d7maribmfalswbmmhq2fraa7hfz5pf2jxs2w")))) (build-system meson-build-system) (inputs `(("date" ,date) ("fmt" ,fmt) @@ -1699,6 +1699,7 @@ display a clock or apply image manipulation techniques to the background image." ("libinput" ,libinput) ("libmpdclent" ,libmpdclient) ("libnl" ,libnl) + ("libxml2" ,libxml2) ("pulseaudio" ,pulseaudio) ("spdlog" ,spdlog) ("wayland" ,wayland))) diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index 166a747229..ae64072c8e 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -27,7 +27,7 @@ ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019 Kyle Andrews <kyle.c.andrews@gmail.com> ;;; Copyright © 2019, 2020 Josh Holland <josh@inv.alid.pw> -;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org> +;;; Copyright © 2019, 2021 Tanguy Le Carrour <tanguy@bioneland.org> ;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2020 David Wilson <david@daviwil.com> ;;; Copyright © 2020 Ivan Vilata i Balaguer <ivan@selidor.net> @@ -105,6 +105,7 @@ #:use-module (gnu packages haskell-xyz) #:use-module (gnu packages icu4c) #:use-module (gnu packages image) + #:use-module (gnu packages libbsd) #:use-module (gnu packages libevent) #:use-module (gnu packages linux) #:use-module (gnu packages m4) @@ -774,7 +775,7 @@ move windows, switch between desktops, etc.).") (define-public scrot (package (name "scrot") - (version "1.6") + (version "1.7") (source (origin (method git-fetch) @@ -784,7 +785,7 @@ move windows, switch between desktops, etc.).") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1qanx2xx9m5l995csqzfcm1ks2nhk90zga1wzbkjjl75ga4iik2h")))) + (base32 "0rls08mpalx4xp5ysmg7m5lgx9q8g8m8q40m47f11mqa84z88nd1")))) (build-system gnu-build-system) (native-inputs `(("autoconf" ,autoconf) @@ -794,6 +795,7 @@ move windows, switch between desktops, etc.).") (inputs `(("giblib" ,giblib) ("imlib2" ,imlib2) + ("libbsd" ,libbsd) ("libx11" ,libx11) ("libxcomposite" ,libxcomposite) ("libxext" ,libxext) diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 3b0ab90574..d9ca96a9f6 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -1223,7 +1223,7 @@ Libxml2).") (define-public minixml (package (name "minixml") - (version "3.2") + (version "3.3") (source (origin (method url-fetch) (uri (string-append "https://github.com/michaelrsweet/mxml/" @@ -1231,7 +1231,7 @@ Libxml2).") "/mxml-" version ".tar.gz")) (sha256 (base32 - "0x698ayv00vrjg0yfm20lakpgl7m02x1fk2n09wygwk4973gd55q")))) + "1n1xzvhnsjsgsqaq1rg9zilwf0b2rydsadbxzy64z3lydwv7dybw")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 574562f065..1e8aba9704 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -6651,9 +6651,6 @@ user set the transparency on a window.") (home-page "https://gitlab.freedesktop.org/xorg/app/transset") (license license:x11))) -(define-public transset-df - (deprecated-package "transset-df" transset)) - (define-public bdfresize (package (name "bdfresize") |