diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 190cadcc97..31bd4e24b0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12320,6 +12320,29 @@ background correction, and quality control features for GoldenGate, Infinium, and Infinium HD arrays are also included.") (license license:gpl2))) +(define-public r-lefser + (package + (name "r-lefser") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "lefser" version)) + (sha256 + (base32 + "0wi70b4k7s0xj7bh46s0x0fckqc5qspzq8k4k913vg6cnhqgw2dd")))) + (properties `((upstream-name . "lefser"))) + (build-system r-build-system) + (propagated-inputs (list r-coin r-ggplot2 r-mass r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/waldronlab/lefser") + (synopsis "LEfSE method for microbiome biomarker discovery") + (description + "Lefser is an implementation in R of the popular \"LDA Effect +Size\" (LEfSe) method for microbiome biomarker discovery. It uses the +Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis +to find biomarkers of groups and sub-groups.") + (license license:artistic2.0))) + (define-public r-lumi (package (name "r-lumi") |