diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 23a87c3dde..39f2a81794 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3075,6 +3075,38 @@ package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.") (license license:gpl2))) +(define-public r-mbkmeans + (package + (name "r-mbkmeans") + (version "1.6.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "mbkmeans" version)) + (sha256 + (base32 + "0rc83mh9xzwczfn88j0xah86ldzi1kdfqgd938nj57ifx3zci4xh")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (propagated-inputs + `(("r-delayedarray" ,r-delayedarray) + ("r-rcpp" ,r-rcpp) + ("r-s4vectors" ,r-s4vectors) + ("r-singlecellexperiment" ,r-singlecellexperiment) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-clusterr" ,r-clusterr) + ("r-benchmarkme" ,r-benchmarkme) + ("r-matrix" ,r-matrix) + ("r-bluster" ,r-bluster) + ("r-beachmat" ,r-beachmat) + ("r-rhdf5lib" ,r-rhdf5lib) + ("r-biocparallel" ,r-biocparallel))) + (home-page "https://bioconductor.org/packages/mbkmeans") + (synopsis "Mini-batch k-means clustering for single-cell RNA-seq") + (description "This package implements the mini-batch k-means algorithm for +large datasets, including support for on-disk data representation.") + (license license:expat))) + (define-public r-multtest (package (name "r-multtest") |