diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 6 insertions, 24 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3a717cafa7..c0f6b72cf8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -18097,41 +18097,23 @@ datasets, which increases the analytical flexibility and the statistical power of the analyses while minimizing technical noise.") (license license:expat)))) +;; This package bundles a version of Boost. We cannot use the latest version +;; of Boost here, as we also need to make sure that the BH (r-bh) package is +;; compatible with whatever this package bundles. (define-public r-cytolib (package (name "r-cytolib") - (version "2.14.0") + (version "2.14.1") (source (origin (method url-fetch) (uri (bioconductor-uri "cytolib" version)) (sha256 (base32 - "1r2slhzrp3gf45k5gknqgj3vjz7p0rx2yjzrbp020inj82fp4mgi")) - ;; Remove bundled boost sources - (modules '((guix build utils))) - (snippet - '(delete-file-recursively "src/boost")))) + "1kagik93ddcl3m1i2bqzzlh18lbxywfn3pxmp47p45kayzxzldrf")))) (properties `((upstream-name . "cytolib"))) (build-system r-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (add-after 'unpack 'unbundle - (lambda _ - (substitute* "src/Makevars.in" - (("\\$\\(USERLIB\\): \\$\\{boost_fs_objs\\}") - "$(USERLIB):") - (("\\$\\{cytolib_objs\\} \\$\\{boost_fs_objs\\} \\$\\{boost_sys_objs\\}") - "${cytolib_objs}") - (("PKG_CPPFLAGS =") - "PKG_CPPFLAGS = -lboost_filesystem") - #; - (("^BOOSTFSLIB.*") - (string-append "BOOSTFSLIB=" - #$(this-package-input "boost") "/libboost_filesystem.so\n")))))))) - (inputs (list boost openblas protobuf zlib)) + (inputs (list openblas protobuf zlib)) (native-inputs (list r-knitr)) (propagated-inputs |