diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/cran.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8816b2082b..5ea36cfdd6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13888,3 +13888,35 @@ regular expressions. Regular expressions are a very powerful feature, however they are often difficult to interpret. Rex allows you to build complex regular expressions from human readable expressions") (license license:expat))) + +(define-public r-sctransform + (package + (name "r-sctransform") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "sctransform" version)) + (sha256 + (base32 + "1r5kiqqs318q59h2i8m7c6nhghp9w6q26ss2y5a390lkhsawgx6p")))) + (build-system r-build-system) + (propagated-inputs + `(("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-reshape2" ,r-reshape2))) + (home-page "https://github.com/ChristophH/sctransform") + (synopsis "Variance stabilizing transformations for Single Cell UMI Data") + (description + "This package provides a normalization method for single-cell UMI count +data using a variance stabilizing transformation. The transformation is based +on a negative binomial regression model with regularized parameters. As part +of the same regression framework, this package also provides functions for +batch correction, and data correction.") + (license license:gpl3))) |