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2014-12-19Merge branch 'nix' into 'master'.Ludovic Courtès
2014-12-19gnu: Add bowtieRicardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-19services: static-networking-service: Switch to (guix build syscalls).Ludovic Courtès
* gnu/services/networking.scm (static-networking-service): Remove #:inetutils parameter. Rewrite using 'configure-network-interface' and 'set-network-interface-flags'.
2014-12-19syscalls: Add more procedures for network interfaces.Ludovic Courtès
* guix/build/syscalls.scm (sizeof*, type-size, write-type, write-types, read-type, read-types, define-c-struct): New macros. (SIOCSIFFLAGS, SIOCGIFADDR, SIOCSIFADDR): New variables. (sockaddr-in, sockaddr-in6): New C structs. (write-socket-address!, read-socket-address, set-network-interface-flags, set-network-interface-address, network-interface-address, configure-network-interface): New procedures.
2014-12-19gnu: Add Clone.Ricardo Wurmus
* gnu/packages/perl.scm (perl-clone): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-18gnu: cairocffi: Move to python module.Federico Beffa
* gnu/packages/gtk.scm, gnu/packages/python.scm (python-cairocffi, python2-cairocffi): Move variables from gtk to python module to avoid circular dependency. Reported by Mark H Weaver <mhw@netris.org>
2014-12-18gnu: matplotlib: Add gtk3 backends and optional dependency. Adjust inputs.Federico Beffa
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Add gtk3 backends with the necessary inputs and a 'configure-environment' phase. Add the optional 'python-pillow' dependency. Move 'python-pyparsing' from 'inputs' to 'propagated-inputs' as it is required at run time.
2014-12-18gnu: Add cairocffi.Federico Beffa
* gnu/packages/gtk.scm (python-cairocffi, python2-cairocffi): New variables.
2014-12-18gnu: Add xcffibFederico Beffa
* gnu/packages/python.scm (python-xcffib, python2-xcffib): New variables.
2014-12-18build/python-build-system: Fix easy-install.pth collisions.Federico Beffa
* guix/build/python-build-system.scm (rename-pth-file): New rename-pth-file phase and corresponding function.
2014-12-17gnu: icecat: Build with PulseAudio support.Ludovic Courtès
* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add --enable-pulseaudio.
2014-12-17gnu: linux-libre: Update to 3.18.1Jason Self
* gnu/packages/linux.scm (linux-libre): Update to version 3.18.1.
2014-12-17gnu: Add Test::Simple.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test-simple): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-17gnu: Add Test::Deep.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test-deep): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-17gnu: Add Test::NoWarnings.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test-nowarnings): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-17gnu: Add Test::Tester.Ricardo Wurmus
* gnu/packages/perl.scm (perl-test-tester): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16Revert "gnu: python-numpy-bootstrap: Reduce matrix size in failing test."Federico Beffa
This reverts commit 31557440c29f8d93b366422bfec4dab341eff79f as it did not provide the desired effect. The test is still failing.
2014-12-16gnu: Add bedtoolsRicardo Wurmus
* gnu/packages/bioinformatics.scm (bedtools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16gnu: tmux: Update to 1.9a.Tomáš Čech
* gnu/packages/tmux.scm (tmux): Update to 1.9a Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16gnu: samtools: disable tests for non-64-bit systemsRicardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit systems because of an upstream bug in the test data. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-16gnu: groff: Disable parallel builds.Mark H Weaver
* gnu/packages/groff.scm (groff): Disable parallel builds.
2014-12-16gnu: groff: Update to 1.22.3.Mark H Weaver
* gnu/packages/groff.scm (groff): Update to 1.22.3.
2014-12-16gnu: ghostscript: Update to 9.14.0.Mark H Weaver
* gnu/packages/ghostscript.scm (ghostscript): Update to 9.14.0. Change license to agpl3+.
2014-12-16gnu: lcms: Update to 2.6.Mark H Weaver
* gnu/packages/ghostscript.scm (lcms): Update to 2.6.
2014-12-15gnu: icecat: Apply security updates for CVE-2014-{1587,1590,1592,1593,1594}.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2014-1587-bug-1042567.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1072847.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1079729.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1080312.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1089207.patch, gnu/packages/patches/icecat-CVE-2014-1590.patch, gnu/packages/patches/icecat-CVE-2014-1592.patch, gnu/packages/patches/icecat-CVE-2014-1593.patch, gnu/packages/patches/icecat-CVE-2014-1594.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat): Add them.
2014-12-15profiles: Fix removal of the next-to-last item in a profile.Ludovic Courtès
Fixes a bug whereby removing the next-to-last item in a profile would lead to an obscure error, as shown at <http://lists.gnu.org/archive/html/guix-devel/2014-12/msg00292.html>. Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>. * guix/profiles.scm (profile-derivation)[inputs]: Use (list info-dir "out") instead of just INFO-DIR.
2014-12-15tests: Use 'test-assertm' for profiles.Ludovic Courtès
* tests/profiles.scm (test-assertm): New macro. ("profile-derivation"): Use it instead of 'test-assert' + 'run-with-store'.
2014-12-15gnu: Add bullet.Tomáš Čech
* gnu/packages/game-development.scm: New file * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2014-12-15gnu: Add vala.宋文武
* gnu/packages/gnome.scm (vala): New variable.
2014-12-15gnu: youtube-dl: Update to 2014.12.15.Mark H Weaver
* gnu/packages/video.scm (youtube-dl): Update to 2014.12.15.
2014-12-14gnu: Add xfce4-battery-plugin.Mark H Weaver
* gnu/packages/xfce.scm (xfce4-battery-plugin): New variable.
2014-12-14gnu: xfce4-panel: Support panel plugins from other packages.Mark H Weaver
* gnu/packages/patches/xfce4-panel-plugins.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/xfce.scm (xfce4-panel): Add the patch, and a native search path specification for X_XFCE4_LIB_DIRS.
2014-12-14gnu: python-numpy-bootstrap: Reduce matrix size in failing test.Federico Beffa
* gnu/packages/python.scm (python-numpy-bootstrap): Add phase 'fix-failing-tests.
2014-12-14gnu: Add xdotool.John Darrington
* gnu/packages/xdisorg.scm (xdotool): New variable.
2014-12-14install: Use a low-memory nscd caching policy.Ludovic Courtès
* gnu/system/install.scm (%nscd-minimal-caches): New variable. (installation-services): Use as 'nscd-service' argument.
2014-12-14services: Make 'nscd-service' configurable; cache hosts/services by default.Ludovic Courtès
Before that, as it was given an empty configuration file, nscd would actually have all its caches disabled. * gnu/services/base.scm (<nscd-configuration>, <nscd-cache>): New record types. (%nscd-default-caches, %nscd-default-configuration): New variables. (nscd.conf-file): New procedure. (nscd-service): Add 'config' parameter. Use 'nscd.conf-file', and pass its result as the '-f' parameter of nscd. * doc/guix.texi (Base Services): Update 'nscd-service' documentation accordingly. Document 'nscd-configuration', 'nscd-cache', '%nscd-default-configuration', and '%nscd-default-caches'.
2014-12-13nls: Add French translation.Ludovic Courtès
2014-12-13activation: Copy the account skeletons when creating the 'root' account.Ludovic Courtès
* gnu/build/activation.scm (%skeleton-directory): New variable. (dot-or-dot-dot?, copy-account-skeletons): New procedure. (add-user): Use 'copy-account-skeletons'. (activate-etc): Use 'dot-or-dot-dot?'.
2014-12-13system: grub: Make sure the font and background image are always found.Ludovic Courtès
* gnu/system/grub.scm (eye-candy): Add 'search --file --set'.
2014-12-13system: Adjust 'grub.cfg' to work on systems with a separate /boot.Ludovic Courtès
Fixes <http://bugs.gnu.org/19220>. Reported by Nikita Karetnikov <nikita@karetnikov.org>. * gnu/system/grub.scm (grub-configuration-file)[entry->gexp]: Add 'search --file --set'. (grub-configuration-file)[builder]: Remove 'search.file'.
2014-12-13vm: Use QEMU's standard VGA emulation by default.Ludovic Courtès
* gnu/system/vm.scm (common-qemu-options): Add "-vga std".
2014-12-13services: xorg: Run the window manager from a login shell.Ludovic Courtès
This is a followup to 1d18d87, which fixes <http://bugs.gnu.org/19119>. * gnu/services/xorg.scm (xinitrc)[builder]: Add 'exec-from-login-shell' procedure. Use it instead of 'execl' when launching XSESSION, WMAKER, or RATPOISON.
2014-12-13system: Add sudo to '%base-packages'.Ludovic Courtès
* gnu/system.scm (%base-packages): Add SUDO.
2014-12-13gnu: python-numpy-bootstrap: Make tests verbose.Federico Beffa
* gnu/packages/python.scm (python-numpy-bootstrap): Make tests verbose to allow test failure debugging on hydra.
2014-12-13gnu: xfconf: Disable parallel tests.宋文武
* gnu/packages/xfce.scm (xfconf): Add 'arguments' field.
2014-12-13gnu: Add samtoolsRicardo Wurmus
* gnu/packages/bioinformatics.scm: New file * gnu-system.am (GNU_SYSTEM_MODULES): Add it Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-12-13system: /etc/profile defines 'MANPATH', which includes the global profile.Ludovic Courtès
* gnu/system.scm (etc-directory)[profile]: Set 'MANPATH'.
2014-12-12gnu: Add nginx.Mark H Weaver
* gnu/packages/web.scm (nginx): New variable.
2014-12-12gnu: pcre: Update to 8.36 and enable JIT support.Mark H Weaver
* gnu/packages/pcre.scm (pcre): Update to 8.36. Enable JIT support.
2014-12-12gnu: Add xfdesktop.宋文武
* gnu/packages/xfce.scm (xfdesktop): New variable.
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