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2023-12-04gnu: Add python-accupy.Felix Gruber
* gnu/packages/maths.scm (python-accupy): New variable. * gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch: New file. * gnu/packages/patches/python-accupy-use-matplotx.patch: New file. * gnu/local.mk (dist_patch_DATA): Add new patch files. Change-Id: I0222665d54a36830844b3b33e3dcb546741cfaa1 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-03gnu: igt-gpu-tools: Update to 1.28Gabriel Wicki
* gnu/packages/admin.scm (igt-gpu-tools): Update to 1.28. [source]: Remove patch. [inputs]: Add python. * gnu/packages/patches/igt-gpu-tools-Use-libproc2.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Change-Id: I5dccd7d5a5df0084fabf713949940775671aecd7 Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-12-03gnu: zig: Build with baseline cpu by default.Ekaitz Zarraga
* gnu/packages/patches/zig-use-baseline-cpu-by-default.patch: Add file. * gnu/packages/zig.scm (zig-0.10.1): Apply patch above. * gnu/local/mk (dist_patch_DATA): Register it. Change-Id: I40bd28071c97c0dd0a907c704072b52b26d2de28 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-12-02gnu: igraph: Update to 0.10.7.David Elsing
* gnu/packages/graph.scm (igraph): Update to 0.10.7. [source]: Use git-fetch. Apply patch. <snippet>: Remove the entire "vendor" and "src/isomorphism/bliss" directories. Patch CMakeLists.txt to not build and use vendored dependencies. [arguments]: Add -DIGRAPH_INTEGER_SIZE=64 to #:configure-flags. Add phases to use unbundled libraries and build documentation. [native-inputs]: Add bison, docbook-xml-4.3, docbook-xsl, flex, pcg-c, python, source-highlight and xmlto. [inputs]: Remove gmp and libxml2. Add bliss and suitesparse-cxsparse. * gnu/packages/patches/igraph-fix-varargs-integer-size.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-12-02gnu: python-sphinx-prompt: Fix tests.Lars-Dominik Braun
docutils>=0.19 broke the tests, which upstream fixed in a newer commit. Cherry-pick it. * gnu/packages/patches/python-sphinx-prompt-docutils-0.19.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/sphinx.scm (python-sphinx-prompt)[origin]: Use it. Change-Id: I597387a35e6a1da01063b4812e0f919788a13b54
2023-11-30gnu: Add plasp.Liliana Marie Prikler
* gnu/packages/patches/plasp-fix-normalization.patch: New file. * gnu/packages/patches/plasp-include-iostream.patch: New file. * gnu/local.mk (dist_patch_DATA): Register them here. * gnu/packages/potassoc.scm (plasp): New variable. Change-Id: I0d8d64153b180a7d1d8d81888f843458efdf5e51
2023-11-27gnu: php: Update to 8.2.13.Efraim Flashner
* gnu/packages/php.scm (php): Update to 8.2.13. [source]: Remove patch. [arguments]: Adjust the 'prepare-tests phase to skip fewer tests. [inputs]: Replace openssl-1.1 with openssl. * gnu/packages/patches/php-fix-streams-copy-length.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Change-Id: I29892deda457fdbaa6dd5e01515e97583951836d
2023-11-26Merge branch 'master' into mesa-updatesJohn Kehayias
Change-Id: Ide02272218e76dfae6dc9f8748871c8d61704260
2023-11-25gnu: yggdrasil: Update to 0.5.2.Artyom V. Poptsov
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.2. [propagated-inputs]: Rewrite inputs to replace "go-golang-org-x-sys" with "go-golang-org-x-sys-0.8". Use "go-golang-org-x-sys-0.8". Add "go-github-com-bits-and-blooms-bitset", "go-github-com-bits-and-blooms-bloom", "go-github-com-quic-go-quic-go", and "go-github-com-hjson-hjson-go". * gnu/packages/patches/yggdrasil-extra-config.patch: Update. Change-Id: I3c411524e589f0af52eaa90230810148f6ad4e31 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-11-24gnu: go-gopkg-in-yaml-v3: Fix build on 32-bit systems.Efraim Flashner
* gnu/packages/golang.scm (go-gopkg-in-yaml-v3)[source]: Add patch. * gnu/packages/patches/go-gopkg-in-yaml-v3-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: Ia8a96b15d37a3d2f133da9374cac1e58e38f2d2c
2023-11-23gnu: scilab: Update to 2024.0.0.Nicolas Graves
* gnu/packages/maths.scm (scilab): Update to 2024.0.0. Remove patch. [native-inputs]: Switch to AUTOCONF-2.71. [inputs]: Switch to HDF5-1.10; add LIBARCHIVE. [arguments]: Add ‘fix-linking’ phase. Change-Id: Ie1af4dc620cee644388f6b8acf88ea50c4148b65 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-11-22gnu: aria2: Unbundle wslay.Efraim Flashner
* gnu/packages/bittorrent.scm (aria2)[source]: Add snippet to delete configure script and remove bundled dependency. Add a patch. [native-inputs]: Add autoconf, automake, gettext-minimal, libtool. [inputs]: Add wslay. * gnu/packages/patches/aria2-unbundle-wslay.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I92390a872454726ff9587518bb535d2105c44ef3
2023-11-21Merge branch 'master' into mesa-updatesJohn Kehayias
Change-Id: I94c6874e5fdf916e3eb911f1a7df610cd3275474
2023-11-15gnu: ghc-persistent: Fix build on i686-linux.Efraim Flashner
* gnu/packages/haskell-xyz.scm (ghc-persistent)[source]: Add patch. * gnu/packages/patches/ghc-persistent-fix-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I1b2c8419f3136d6c9df772d7c7abdc83a80d6112
2023-11-15gnu: ghc-memory: Fix building on i686-linux.Efraim Flashner
* gnu/packages/haskell-xyz.scm (ghc-memory)[source]: Add patch. * gnu/packages/patches/ghc-memory-fix-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I8dc7a13a94ce37021ad402b4e2d0cd061220f670
2023-11-15gnu: ghc-bloomfilter: Update to 2.0.1.2.Efraim Flashner
* gnu/packages/haskell-xyz.scm (ghc-bloomfilter): Update to 2.0.1.2. [source]: Remove patch. Add snippet to fix building on 32-bit systems. [arguments]: Remove field. [home-page]: Update to new home-page. * gnu/packages/patches/ghc-bloomfilter-ghc9.2.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Change-Id: Ie61d079b001f804fd28acaca2acd3127b88935d4
2023-11-15gnu: ghc-basement: Fix build on i686-linux.Efraim Flashner
* gnu/packages/haskell-xyz.scm (ghc-basement)[source]: Add patch. * gnu/packages/patches/ghc-basement-fix-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: Ife75c651d4b9cffa14ec1c5165a9254cfee3f09f
2023-11-15gnu: ucx: Update to 1.15.0.Ludovic Courtès
* gnu/packages/fabric-management.scm (ucx): Update to 1.15.0. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Update for 1.15.0.
2023-11-14gnu: agda-categories: Adapt to agda-stdlib 1.7.3.Josselin Poiret
* gnu/packages/patches/agda-categories-use-stdlib-1.7.3.patch: New patch. * gnu/packages/agda.scm (agda-categories)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I25f16d55f14465a1dae882fd8ec47a95f8598e5c
2023-11-14gnu: agda: Update to 2.6.4.Josselin Poiret
* gnu/packages/agda.scm (agda): Update to 2.6.4. Also build with optimizations and cluster counting support. * gnu/packages/patches/agda-use-sphinx-5.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I98a66678ec401b9201d9fd3a0f606fff9767b4bc
2023-11-12gnu: Add llvm-17.Hilton Chain
* gnu/packages/llvm.scm (llvm-17): New variable. * gnu/packages/patches/clang-17.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I8cdda0737b1137cf86887fb5b854e71977a88b6b
2023-11-12gnu: Add llvm-16.Hilton Chain
* gnu/packages/llvm.scm (llvm-16): New variable. * gnu/packages/patches/clang-16.0-libc-search-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I27738152ca95aeeef8d8b7150fdf14825b6b0b4d
2023-11-09gnu: emacs-debbugs: Fix build.Hilton Chain
The current release already contains the changes. * gnu/packages/emacs-xyz.scm (emacs-debbugs)[source]: Remove patch. * gnu/packages/patches/emacs-debbugs-keep-patch-subject.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Change-Id: Id51e6c9dec138721d288be28cd1c5e954d3228a9
2023-10-31Revert "gnu: lvm2: Remove systemd rule."Simon Tournier
This reverts commit c0895371c5759c7d9edb330774e90f192cc4cf2c, which does not correctly fix the issue, as reported by Josselin Poiret <dev@jpoiret.xyz> in <https://issues.guix.gnu.org/issue/66586#6>.
2023-10-31gnu: lvm2: Remove systemd rule.Yann Dupont
Fixes <https://issues.guix.gnu.org/65177>. Reported by Adrien 'neox' Bourmault <neox@gnu.org>. * gnu/packages/patches/lvm2-no-systemd.patch: New file. * gnu/packages/linux.scm (lvm2)[source]: Apply patch. * gnu/local.mk: Register new patch. Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com> Change-Id: I6b9d583f5914cc127c067829b5891827c04608cb
2023-10-30gnu: Add online-judge-tools.gemmaro
* gnu/packages/python-xyz.scm (online-judge-tools): New variable. * gnu/packages/patches/online-judge-tools.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: I78315db15ca8205dff607e98388c404ede64fb60
2023-10-30gnu: Add python-online-judge-api-client.gemmaro
* gnu/packages/python-xyz.scm (python-online-judge-api-client): New variable. * gnu/packages/patches/python-online-judge-api-client-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch file. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: If407a070a52e66c723d042217a5ff6e1589efce1
2023-10-22gnu: Remove left-over python-pycrypto patches.Tobias Geerinckx-Rice
This follows up on commit a55e18f17cc82a01c11d03bdfb693c62cb068d5c. Change-Id: If61e46da1dc4f352b362ad3db42859322846984b
2023-10-25gnu: hplip: Fix USB timeouts.Bruno Victal
* gnu/packages/patches/hplip-usb-timeout.patch: New file. * gnu/local.mk: Register it. * gnu/packages/cups.scm (hplip): Use it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-23gnu: icecat: Support Guix packaged extensions and native manifests.Clément Lassieur
* gnu/build/icecat-extension.scm: New file with a MAKE-ICECAT-EXTENSION procedure that makes sure the add-on directory is a symlink, so that Icecat can normalize it into a package store path. * gnu/local.mk (dist_patch_DATA): Register it, as well as new patches. * gnu/packages/browser-extensions.scm (ublock-origin)[properties]: Store the add-on ID so that it is accessible in MAKE-ICECAT-EXTENSION. [arguments]: Use the add-on ID as root directory. (ublock-origin/icecat): New procedure. * gnu/packages/gnuzilla.scm (icecat-minimal)[arguments]: Rewrite the unused 'apply-guix-specific-patches' phase so that it applies the following two patches. [native-search-paths]: New field. * gnu/packages/patches/icecat-compare-paths.patch: New patch that compares add-on paths (which are package store paths) to detect package changes. * gnu/packages/patches/icecat-use-system-wide-dir.patch: New patch that replaces "/usr/lib/mozilla" (the system-wide directory for extensions and native manifests) with "$ICECAT_SYSTEM_DIR".
2023-10-22gnu: patman: Apply patch for new Change-Id setting.Maxim Cournoyer
* gnu/packages/bootloaders.scm (u-boot) [source]: Apply patch. * gnu/packages/patches/u-boot-patman-change-id.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * .patman (keep_change_id): Use it. Series-changes: 3 - New commit Change-Id: I33c03013f6a260b5f5d80212b7b6ebe8a3f97efa
2023-10-21Merge remote-tracking branch 'origin/rust-team'Efraim Flashner
2023-10-21gnu: trilinos-for-dealii-openmpi: Fix build.Paul A. Patience
This fixes the error error: ‘std::hypot’ has not been declared caused by using an older version of gcc, but requires some patches to placate newer versions of gcc. * gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[origin]: Add patches. [native-inputs]: Remove gcc-7. * gnu/packages/patches/teuchos-remove-duplicate-using.patch: New file. * gnu/packages/patches/tpetra-remove-duplicate-using.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-20gnu: unison: Update to 2.53.3.pukkamustard
* gnu/packages/ocaml.scm (unison): Update to 2.53.0. [source]: Remove patch. [build-system]: Use dune-build-system. [outputs]: Remove "doc" output. [native-inputs]: Update package style. [propagated-inputs]: Add lablgtk3 and zlib. [arguments]: Enable tests. <#:phases>: Remove prepare-install and install-fsmonitor phases. * gnu/packages/patches/unison-fix-ocaml-4.08.patch: Remove file. * gnu/local.mk: Unregister. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-18gnu: rust-openssl-sys-0.9: Update to 0.9.93.Efraim Flashner
* gnu/packages/crates-io.scm (rust-openssl-sys-0.9): Update to 0.9.93. [source]: Remove patch. Add snippet to remove dependencies on boringssl and openssl source. * gnu/packages/patches/rust-openssl-src-no-vendor.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2023-10-18gnu: Add rust-1.70.Fries
* gnu/packages/rust.scm (rust-1.70): New variable. * gnu/packages/patches/rust-1.70-fix-rustix-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register file. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-10-16gnu: qtbase: Reinstate date related tests.Maxim Cournoyer
* gnu/packages/qt.scm (qtbase) [native-inputs]: Add tzdata-for-tests. [arguments]: Set the TZDIR and TZ environment variables, and reinstate the tst_qdate, tst_qtimezone and tst_qdatetime tests in the check phase. (qtbase-5) [source]: Replace qtbase-use-TZDIR.patch with qtbase-5-use-TZDIR.patch. * gnu/packages/patches/qtbase-use-TZDIR.patch: Refresh patch with upstream version, and preserve the old one for qtbase@5 as... * gnu/packages/patches/qtbase-5-use-TZDIR.patch: ... this. * gnu/local.mk (dist_patch_DATA): Register new patch. Series-changes: 2 - Use old TZDIR patch for qtbase@5 (the new one doesn't apply)
2023-10-15gnu: tootle: Deprecate in favor of tuba.Efraim Flashner
* gnu/packages/mastodon.scm (tootle): Deprecate for tuba. * gnu/packages/patches/tootle-glib-object-renaming.patch, gnu/packages/patches/tootle-reason-phrase.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
2023-10-15gnu: connman: Update to 1.42.Tobias Geerinckx-Rice
* gnu/packages/connman.scm (connman): Update to 1.42. [source]: Replace all (obsolete) patches with a new one. * gnu/packages/patches/connman-CVE-2022-32292.patch, * gnu/packages/patches/connman-CVE-2022-32293-pt1.patch, * gnu/packages/patches/connman-CVE-2022-32293-pt2.patch: Delete files. * gnu/packages/patches/connman-add-missing-libppp-compat.h.patch: New file. * gnu/local.mk (dist_patch_DATA): Remove deleted files, add new one.
2023-10-13gnu: converseen: Update to 0.11.0.0.Nicolas Goaziou
* gnu/packages/image.scm (converseen): Update to 0.11.0.0. * gnu/packages/patches/converseen-hide-updates-checks.patch: Update patch.
2023-10-12gnu: glibc: Fix CVE-2023-4911.Liliana Marie Prikler
* gnu/packages/patches/glibc-2.35-CVE-2023-4911.patch: New file. * gnu/local.mk: Register it here. * gnu/packages/base.scm (glibc/fixed): New variable. (glibc): Use it as replacement.
2023-10-10gnu: Add ergodox-firmware-colemak-jc-mod.Maxim Cournoyer
* gnu/packages/firmware.scm (make-ergodox-firmware): New procedure (ergodox-firmware-colemak-jc-mod): New variable. * gnu/packages/patches/ergodox-firmware-fix-json-target.patch: New file. * gnu/packages/patches/ergodox-firmware-fix-numpad.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them.
2023-10-10gnu: Add qmk-firmware-ergodox-ez-hacker-dvorak.Maxim Cournoyer
* gnu/packages/firmware.scm (qmk-firmware-ergodox-ez-hacker-dvorak): New variable. * gnu/packages/patches/qmk-firmware-fix-hacker-dvorak.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2023-10-09gnu: icu4c-73-promise: Fix broken test.Clément Lassieur
* gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/gnuzilla.scm (icu4c-73-promise)[source]: Add patch. * gnu/packages/patches/icu4c-fix-TestHebrewCalendarInTemporalLeapYear.patch: New file.
2023-10-08gnu: emacs-next-minimal: Apply Guix patches.Liliana Marie Prikler
* gnu/packages/patches/emacs-next-native-comp-driver-options.patch: Add file. * gnu/packages/patches/emacs-next-exec-path.patch: Add file. * gnu/local.mk (dist_patch_DATA): Register them here. * gnu/packages/emacs.scm (emacs-next-minimal)[origin](patches): Include the same patches as emacs-minimal, save for the variants specific to emacs-next introduced above. Co-Authored-By: Nicolas Graves <ngraves@ngraves.fr> Fixes: ‘emacs-next’ is almost unusable <https://bugs.gnu.org/66227>
2023-10-06gnu: Add gklib-suitesparse.David Elsing
* gnu/packages/maths.scm (gklib-suitesparse): New variable. * gnu/packages/patches/gklib-suitesparse.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05gnu: Add WCSTools.Sharlatan Hellseher
* gnu/packages/astronomy.scm (wcstools): New variable. * gnu/packages/patches/wcstools-extend-makefiles.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05gnu: emacs-elpy: Update to 1.35.0-2.7ff8ffa.Maxim Cournoyer
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.35.0-2.7ff8ffa. [origin]: Apply patch. [arguments]: Disable a new test in the disable-broken-tests phase. * gnu/packages/patches/emacs-elpy-dup-test-name.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2023-10-04gnu: emacs-debbugs: Preserve subject when replying to patch threads.Maxim Cournoyer
* gnu/packages/patches/emacs-debbugs-keep-patch-subject.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/emacs-xyz.scm (emacs-debbugs) [origin]: Use it.
2023-10-04gnu: scilab: Update to 2023.1.0.David Elsing
* gnu/packages/maths.scm (scilab): Update to 2023.1.0. [source] Use git-fetch. <modules>: Add (guix build utils) and (ice-9 ftw). <patches>: Add patch for hdf5 >= 1.10. <snippet>: Move contents of the "scilab" directory to its parents. Remove the other files and autogenerated files. [native-inputs]: Add autoconf, autoconf-archive, automake, bison, eigen, flex, libtool, ocaml and ocaml-findlib. [inputs]: Add ocaml-num, replace hdf5-1.8 by hdf5-1.14 and suitesparse-3 by suitesparse. [arguments]: Remove quasiquote. Add --enable-build-parser, --with-eigen-include=..., OCAMLC=... and OCAMLOPT=... to #:configure-flags. <#:phases>: Add fix-ocaml-num, remove-desktop-files, bootstrap-dynamic_link-scripts and build-parsers phases. Remove fixes for compilation and linker errors from the pre-build phase. [home-page]: Update URL. [description]: Add two spaces between sentences. [license]: Update to gpl2 and bsd-3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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