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* gnu/packages/music.scm (abjad-ext-rmakers) [build-system]: Swap to
pyproject-build-system.
[arguments]: Use standard 'check phase.
Change-Id: Ic2591fbe35d7479e120048d334cc202a5e1c9243
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* gnu/packages/music.scm (abjad-ext-rmakers) [native-inputs]: Add
python-sphinx-autodoc-typehints.
Change-Id: Ide0e00b3c12180d341f1ed8052fb4e10a6504499
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* gnu/packages/music.scm (abjad-ext-nauert) [build-system]: Swap to
pyproject-build-system.
[arguments]: Use standard 'check phase.
Change-Id: Ica32dd692964d200a81628e82a8333656dc10170
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* gnu/packages/music.scm (abjad-ext-nauert) [native-inputs]: Add
python-sphinx-autodoc-typehints.
Change-Id: Iec9dcbf1127ef7dc7b3bcd5a4be9eada51424f4a
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* gnu/packages/python-check.scm (python-pytest-socket) [build-system]:
Swap to pyproject-build-system.
[arguments] <#:test-flags>: Disable tests requiring network
access. <#:phases>: Use standard phases.
Change-Id: Ib7fe0b3dab4e269c00856a10b8ca23acc8c8e180
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* gnu/packages/python-check.scm (python-pyinstrument) [build-system]:
Swap to pyproject-build-system.
[native-inputs]: Add python-greenlet.
Change-Id: I1cd0c3e906fbbdc561e66bae9fe35333f61801cf
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* gnu/packages/python-check.scm (python-pyinstrument): Update to 4.6.2.
Change-Id: I28e147272f273c04f7221f6d4f70677aee9a3747
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* gnu/packages/python-check.scm (python-pytest-csv) [build-system]: Swap
to pyproejct-build-system.
[arguments]: Use standard 'check phase.
Change-Id: Iae04747b117bf5b5f9fb3c8b57cd40b8822edd77
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* gnu/packages/python-check.scm (python-beartype) [build-system]: Swap
to pyproject-build-system.
[arguments]: Use standard 'check phase and <#:test-flags>.
Change-Id: I372c5be3b142f0e25d15fd2bac20fc9cd4d8030c
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* gnu/packages/python-xyz.scm (python-pandas-vet): New variable.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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The tests are supposed to be skipped when there are problems with excess
precision.
* gnu/packages/cpp.scm (google-highway)[arguments]: Modify phases when
building for i686-linux to conditionally patch the tests.
Change-Id: I6381a8c9f65196fd1d7d4e4130d784863b634df5
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* gnu/packages/ocaml.scm (binsec): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Ifc57720f97f9ffa8c3558e3cd2d741cdbf73ee3a
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* gnu/packages/ocaml.scm (ocaml-grain-dypgen): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I9804cb17863c112d57f0f93b414e568707dae88d
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* gnu/packages/ocaml.scm (ocaml-toml): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Ia3ec7d0261cd6950f1a73641fc65b3ef7ce98f24
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* gnu/packages/ocaml.scm (ocaml-iso8601): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I9463d6f6e3f8ffe43a0cfb1c95edea42fc770323
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* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.1.
Change-Id: I26b6c35d8966744bbcb79d98328c9734360f04f3
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.1.
Change-Id: Ib758189b9439ec822edb2e85d261b4ccd8618609
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.3.
Change-Id: I8aa747dd0a725f84dca1441693ce573a4567f70c
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* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.2.
Change-Id: Iba4be0c63d792caddcea69ee77aa94ce6869c1d2
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* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.2.
Change-Id: Id7265b49246e75d23086dc159da9b4f69a756a7d
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* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.1.
Change-Id: I18a94851cd139951c2987054c22f01809d2479b3
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* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.3.
[propagated-inputs]: Remove r-ggseqlogo and pandoc; add r-seqlogo.
Change-Id: I8be7d8fc4278c8ec2db6932935f70292a4f47049
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.6.
Change-Id: I57a53d4a73e9b4ce36d97092dab0789d6509484f
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* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.2.
Change-Id: I8930f72b47ff92b3b798d9a45fc0598bec1ba53e
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* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.2.
Change-Id: I45ba28279e0b843bcd635c2e30fb696e85195ce7
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* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.3.
Change-Id: I4f8d5897af796afbce269748c6a5676db72e4baf
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* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.1.
Change-Id: I42ae64544b53d6ddd72b948af4093ef4dd31a9c6
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.2.
[propagated-inputs]: Remove r-biocstyle and r-stringr.
[native-inputs]: Remove r-rmarkdown.
Change-Id: I76b1601397bc69651c0b788404c6b0c67d830830
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* gnu/packages/parallel.scm (parallel): Update to 20240122.
Change-Id: I4e416cbad5b6f4267a9aab7996c9156a861e3ad1
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/text-editors.scm (rust-parinfer)[arguments]: Install the
bundled Vim and Kakoune plugins.
Change-Id: I881315481ec08c59576c4530ae72b877c399fc66
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/machine-learning.scm (python-gguf): New variable.
Change-Id: Icf6138486cccc5b4c3141424baccf17c4edb3449
Signed-off-by: Andreas Enge <andreas@enge.fr>
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Fixes <https://issues.guix.gnu.org/29365>.
WebKit was removed from Qt5 in favor of WebEngine; upstream addressed
this in their last stable release, in 2018. The package still fails at
runtime: this commit lays the ground for further fixes.
* gnu/packages/medical.scm (openmolar-1): Update to release 1.1.6-g81838c8.
[arguments]: Extend 'patch-/usr phase to source file localsettings.py.
[inputs]: Add python-pyqtwebengine.
[propagated-inputs]: Add qtwebengine-5.
Change-Id: Ia4e4c052397201c26834dec2358ca5c20beb581d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-science.scm (python-scikit-opt): New variable.
Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/gnupg.scm (gnupg)[arguments]: Pass libraries prefixes when
cross-crompiling.
Change-Id: I461ba02ddf5bb23277bd6685c2106e4ad37e2184
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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* gnu/packages/vim.scm (vim): Update to 9.1.0059.
Change-Id: Idf89d04a6c4e2297bcaad7a8b275de4a124001a9
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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This is follow up commit 9ffdcb249278d9bb95ffb6c6e9f94b675bb1068c.
* gnu/packages/emulators.scm: Update copyright for "Felix Gruber
<felgru@posteo.net>".
* gnu/packages/simulation.scm: Remove "Copyright © 2024 Felix Gruber
<felgru@posteo.net>".
Change-Id: I3f39abb0fbe05e7c6af9715fb6cc41c20b6f0a45
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While utf8proc is an optional dependency, it is required for shaping
support. Without utf8proc, fcft_rasterize_text_run_utf32() is a no-op.
This is a popular function used—among other things—by yambar, foot,
fuzzel and fnott. Therefore, many other Linux distributions (Arch,
Debian, Fedora, …) enable this feature and I think it would be nice
to have in Guix as well.
* gnu/packages/fontutils.scm (fcft): Depend on utf8proc.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I7489dbc7a42ffcca509d090df7d2a6250bf996ff
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* gnu/packages/llvm.scm (lldb): Update to 17.0.6.
[inputs]: Change from LLVM-15 and CLANG-15 to LLVM-17 and CLANG-17.
Change-Id: Iad04ee722c81ecb223ea4d57d25ea57ca7df59a0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/games.scm (odamex) [inputs]: Remove labels.
Change-Id: Ie4b97a3dfaa3a0ce3a0e7c5c49ed52fe4e222480
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* gnu/packages/games.scm (odamex) [snippet]: Remove some bundled
libraries which may be replaced by inputs.
[arguments] <#:configure-flags>: Add options to build client, master and
server. Do not use internal libs explicitly.
[native-inputs]: Add pkg-config.
Change-Id: I1974febb2f5f37d963ecb5b663d17a330ba23129
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* gnu/packages/games.scm (odamex): Update to 10.4.0.
[inputs]: Add fltk, jsoncpp, libpng, miniupnpc, portmidi and protobuf.
Change-Id: I371d18498640e15a7bfae527fea12d9432368f50
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/emulators.scm (sameboy): Update to 0.16.2.
Change-Id: I86a31cfca9e69d63d3cb6a13d5db88a6b1abe2a8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/ocr.scm (ocrad): Update to 0.29
Change-Id: I9069a4b20016ed38961cd2606a841933b3151e1a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/sssd.scm (sssd): Update to 2.9.4.
Change-Id: Ib5a4e03c4c732d362f8095aeb72509cfd6e7c4a1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/statistics.scm (r-desctools): Update to 0.99.54.
Change-Id: Ic2f1a625021f11f83bacae0454c50e52551e01cf
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* gnu/packages/statistics.scm (r-tclust): Update to 1.5-6.
Change-Id: Ic456aba29495c670f9a9be8ae9257017730cf1f2
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* gnu/packages/statistics.scm (r-robust): Update to 0.7-4.
Change-Id: I038772a5d83c9a0e40a4aa24a8bd8cabc3ff623a
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* gnu/packages/statistics.scm (r-ggthemes): Update to 5.1.0.
Change-Id: I8eb945aea1aeba6d61d9d03497ba1e3095caa9dd
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* gnu/packages/statistics.scm (r-gplots): Update to 3.1.3.1.
Change-Id: Ie8a457837a9f59a98507921c559ff981e876f64a
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.0.0.
Change-Id: I42e39e8c8c25d068378f2a8e8743b4b77c61cdc4
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