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2023-06-07gnu: sbcl-cl-webkit: Update to 3.5.9.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.5.9.
2023-06-07gnu: python-flit: Update to 3.8.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-flit): Update to 3.8.0. [build-system]: Use pyproject-build-system. [arguments]: Run tests, but disable those that need networking; remove custom 'build phase; remove custom 'install phase; replace custom 'check phase with new 'pre-check phase.
2023-06-07gnu: Add python-clickhouse-connect.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-clickhouse-connect): New variable.
2023-06-07gnu: sbcl: fix build on riscv64-linux.Zheng Junjie
* gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch: New file. * gnu/local.mk(dist_patch_DATA): register it. * gnu/packages/lisp.scm (sbcl): [source]<patches>: Use it here.
2023-06-07Revert "gnu: sbcl: fix build on riscv64-linux."Efraim Flashner
This reverts commit 2a6d2fc1d8e3434e283d6d2e559529b41a242fea.
2023-06-07gnu: sbcl: fix build on riscv64-linux.Efraim Flashner
* gnu/packages/patches/sbcl-riscv-Make-contribs-build-again.patch: New file. * gnu/local.mk(dist_patch_DATA): register it. * gnu/packages/lisp.scm (sbcl): [source]<patches>: Use it here.
2023-06-07gnu: Sort use-module alphabetically in (gnu packages python-xyz).Sharlatan Hellseher
* gnu/packages/python-xyz.scm: Sort use-module alphabetically to ease maintenance. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07gnu: Delete duplicated use-module from (gnu package python-xyz).Sharlatan Hellseher
* gnu/packages/python-xyz.scm: Delete duplicated (gnu packages serialization). Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07gnu: python-can: Simplify package style.Sharlatan Hellseher
* gnu/package/python-xyz.scm (python-can): Simplify package style. [build-system]: Use pyproject-build-system. [argument]: Use Gexp. Remove redundant modify-phases procedure. Add {test-flags}. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07gnu: python-can: Update to 4.2.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-can): Update to 4.2.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-07gnu: hdf4: Add support for riscv64-linux.Efraim Flashner
* gnu/packages/maths.scm (hdf4)[arguments]: Rename custom phase 'add-more-aarch64-support to 'add-more-architecture-support and add support for riscv64-linux. * gnu/packages/patches/hdf4-architectures.patch: Refresh from upstream.
2023-06-07gnu: fltk: Update source uri.Efraim Flashner
* gnu/packages/fltk.scm (fltk)[source]: Update source URI to follow redirect.
2023-06-07gnu: fltk: Update to 1.3.8.Andy Tai
* gnu/packages/fltk.scm (fltk): Update to 1.3.8. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06gnu: openconnect: Update to 9.12.Maxim Cournoyer
* gnu/packages/vpn.scm (openconnect): Update to 9.12.
2023-06-06gnu: openconnect: Fix indentation, remove input labels and use gexps.Maxim Cournoyer
* gnu/packages/vpn.scm (openconnect): Fix indentation. [native-inputs, inputs, propagated-inputs]: Remove input labels. [arguments]: Use gexps.
2023-06-06gnu: wxwidgets: Add libxtst to inputs.Maxim Cournoyer
WxWidgets was already built with XTest support, but mostly by luck, via propagation of libxtst from GTK's propagated at-spi2-core package. Make it an explicit input. * gnu/packages/wxwidgets.scm (wxwidgets) [inputs]: Add libxtst.
2023-06-06gnu: sonnet: Add support for aspell dictionaries.Efraim Flashner
* gnu/packages/kde-frameworks.scm (sonnet)[inputs]: Add aspell.
2023-06-06gnu: kirigami-addons: Update to 0.8.0.Efraim Flashner
* gnu/packages/kde.scm (kirigami-addons): Update to 0.8.0. [source]: Download using git-fetch.
2023-06-06gnu: Add python-decoupler-py.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-decoupler-py): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2023-06-06gnu: icecat: Update to 102.12.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2023-34414 and CVE-2023-34416. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2023-06-06gnu: nim: Update to 1.6.12.Gruruya
Without the attached patch, Nim is broken on Guix as it searches for its stdlib in /lib while it was placed in /lib/nim. * gnu/packages/nim.scm (nim): Update to 1.6.12. [arguments]: In 'patch-installer phase install stdlib source to the right directory. In 'patch-more-shebangs phase edit substitute* to point to the new osproc source. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06services: Check if service is #f before applying clause.Josselin Poiret
* gnu/services.scm (apply-clauses): Check if service is #f before trying to apply clause. Follow up of 181951207339508789b28ba7cb914f983319920f.
2023-06-06gnu: python-anaconda-client: Fix build with Python 3.10.Ricardo Wurmus
* gnu/packages/package-management.scm (python-anaconda-client)[build-system]: Use pyproject-bulid-system. [arguments]: Move contents of 'remove-network-tests phase to #:test-flags; drop trailing #T from 'set-HOME phase; add phase 'python3.10-compatibility; disable test_conda_root and test_conda_root_outside_root_environment.
2023-06-06gnu: Add r-caretensemble.Navid Afkhami
* gnu/packages/cran.scm (r-caretensemble): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-06-06services: 'modify-services' preserves service ordering.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/63921>. The regression was introduced in dbbc7e946131ba257728f1d05b96c4339b7ee88b, which changed the order of services. As a result, someone using 'modify-services' could find themselves with incorrect ordering of expressions in the "boot" script, whereby the cleanup expressions would come after (execl ".../shepherd"). This, in turn, would lead shepherd to error out at boot with EADDRINUSE on /var/run/shepherd/socket. * gnu/services.scm (%delete-service, %apply-clauses): Remove. (clause-alist): New macro. (apply-clauses): New procedure. (modify-services): Use it. Adjust docstring. * tests/services.scm ("modify-services: do nothing"): Remove 'sort' call. ("modify-services: delete service"): Likewise, and add 't4' service. ("modify-services: change value"): Remove 'sort' call and fix expected value.
2023-06-06gnu: sbcl-stmx: Update to 2.0.5-2.f71e742.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-stmx): Update to 2.0.5-2.f71e742. [arguments]: Add 'fix-build' phase.
2023-06-06gnu: txr: Update to 287.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 287.
2023-06-06gnu: sbcl: Update to 2.3.5.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl): Update to 2.3.5.
2023-06-06gnu: openocd: Update to 0.12.0.Jean-Pierre De Jesus DIAZ
* gnu/packages/embedded.scm (openocd): Update to 0.12.0. [inputs]: Remove libusb-compat as openocd dropped support for libusb0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06gnu: jimtcl: Update to 0.82.Jean-Pierre De Jesus DIAZ
* gnu/packages/embedded (jimtcl): Update to 0.82. [arguments]: Use G-Expressions and update failing test, TTY test doesn't fail anymore. [inputs]: Add openssl as an input as now by default jimtcl enables the SSL configuration option. * gnu/packages/embedded (openocd): Support jimtcl 0.82. [arguments]: Link against libssl and libcrypto. [inputs]: Add openssl. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06gnu: libjaylink: Update to 0.3.1.Jean-Pierre De Jesus DIAZ
* gnu/packages/embedded (libjaylink): Update to 0.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-06gnu: thc-ipv6: Do not build with "-march=native".Z572
* gnu/packages/networking.scm (thc-ipv6)[origin]: Add 'snippet'. [properties]: New field. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-05gnu: linux-libre 5.4: Update to 5.4.245.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.245. (linux-libre-5.4-pristine-source): Update hash.
2023-06-05gnu: linux-libre 5.10: Update to 5.10.182.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.182. (linux-libre-5.10-pristine-source): Update hash.
2023-06-05gnu: linux-libre 5.15: Update to 5.15.115.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.115. (linux-libre-5.15-pristine-source): Update hash.
2023-06-05gnu: linux-libre 6.1: Update to 6.1.32.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.32. (linux-libre-6.1-pristine-source): Update hash.
2023-06-05gnu: linux-libre: Update to 6.3.6.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.3-version): Update to 6.3.6. (linux-libre-6.3-pristine-source): Update hash.
2023-06-05gnu: blurhash: Update to 0.2.0.Efraim Flashner
* gnu/packages/image.scm (blurhash): Update to 0.2.0. [native-inputs]: Remove cmake. Add pkg-config.
2023-06-05gnu: cpp-httplib: Update to 0.12.5.Efraim Flashner
* gnu/packages/cpp.scm (cpp-httplib): Update to 0.12.5. [arguments]: Adjust configure-flags to build the tests. Add a make-flag to set CXX. Adjust custom 'disable-network-tests phase to skip more network tests. Remove custom 'check phase. [native-inputs]: Add googletest.
2023-06-05gnu: python-codespell: Update to 2.2.4.Efraim Flashner
* gnu/packages/python-xyz.scm (python-codespell): Update to 2.2.4. [build-system]: Switch to pyproject-build-system. [native-inputs]: Remove python-check-manifest; add python-pygments and python-tomli.
2023-06-05gnu: proj-7: Add upstream patch.Ricardo Wurmus
* gnu/packages/patches/proj-7-initialize-memory.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/geo.scm (proj-7)[source]: Add it.
2023-06-05gnu: python-bulkvis: Reference upstream issue.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-bulkvis)[arguments]: Add comment with link to upstream issue for bokeh compatibility patch.
2023-06-05gnu: python-tenacity: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-tenacity)[build-system]: Use pyproject-build-system. [arguments]: Remove.
2023-06-05gnu: python-tenacity: Use Tornado 6.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-tenacity)[native-inputs]: Replace python-tornado with python-tornado-6.
2023-06-05gnu: python-bokeh: Use Tornado 6.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-bokeh)[propagated-inputs]: Replace python-tornado with python-tornado-6.
2023-06-05gnu: Add python-bulkvis.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-bulkvis): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-06-05gnu: Add python-readpaf.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-readpaf): New variable.
2023-06-05gnu: gcompris-qt: Update to 3.2.Efraim Flashner
* gnu/packages/education.scm (gcompris-qt): Update to 3.2. [inputs]: Add qtcharts, qtquickcontrols2-5. Remove qtquickcontrols-5, qtxml-5.
2023-06-05gnu: mupdf: Update to 1.22.1.Timotej Lazar
* gnu/packages/pdf.scm (mupdf): Update to 1.22.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-06-04gnu: lagrange: Update to 1.16.3.Efraim Flashner
* gnu/packages/web-browsers.scm (lagrange): Update to 1.16.3.
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