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2022-10-06services: dhcp-client: Implement and use a configuration record.Alexey Abramov
* gnu/services/networking.scm (dhcp-client-configuration): New record configuration. (dhcp-client-shepherd-service): Implement a shepher service. Provide a deprication message for legacy configurations. (dhcp-client-service-type): Use dhcp-client-shepherd-service. * doc/guix.texi (Networking Setup): Update. * po/guix/POTFILES.in: Add 'gnu/services/networking.scm'. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-10-05gnu: gnome-maps: Properly wrap GI_TYPELIB_PATH.Liliana Marie Prikler
This fixes a bug reported by pkill9 and tschilptschilp23 in IRC. See <http://logs.guix.gnu.org/guix/2022-10-01.log#031053> and <http://logs.guix.gnu.org/guix/2022-10-05.log#214334>. It does so by using a snippet that's also applied in gnome-shell. * gnu/packages/geo.scm (gnome-maps)[#:phases]: Remove ‘patch-dbus-service’. Update ‘wrap’ so that it uses GJS-specific wrapping code rather than wrap-program.
2022-10-05gnu: gnome-maps: Delete trailing space.Liliana Marie Prikler
* gnu/packages/geo.scm (gnome-maps)[inputs]: Delete trailing spaces.
2022-10-05gnu: gnome-maps: Update to 43.0.Liliana Marie Prikler
* gnu/packages/geo.scm (gnome-maps): Update to 43.0. [arguments]<#:meson>: Use meson-0.63. <#:phases>: Replace ‘skip-gtk-update-icon-cache’ with ‘skip-cache-and-database-updates’. Update accordingly.
2022-10-05gnu: Add megahit.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (megahit): New variable.
2022-10-05gnu: Add cd-hit-auxtools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cd-hit-auxtools): New variable.
2022-10-05gnu: cd-hit: Update to 4.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1. [arguments]: Do not use quasiquote; remove trailing #T from build phases. [inputs]: Add zlib.
2022-10-04gnu: kaiju: Update to 1.9.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.9.0. [arguments]: Use gexps; wrap scripts in install phase. [inputs]: Add bzip2, coreutils, curl, gawk, guile-3.0, gzip, python-wrapper, tar, and wget.
2022-10-04gnu: ibus: Build with GTK4.Liliana Marie Prikler
* gnu/packages/ibus.scm (ibus)[arguments]: Add “--enable-gtk4”. [inputs]: Add gtk and pango-next.
2022-10-04gnu: sdl2: Use ibus-minimal instead of ibus.Liliana Marie Prikler
This prevents an input cycle between GTK -> ffmpeg -> sdl2 -> ibus -> GTK. * gnu/packages/sdl.scm (sdl2)[inputs]: Replace ibus with ibus-minimal.
2022-10-04gnu: Add ibus-minimal.Liliana Marie Prikler
* gnu/packages/ibus.scm (ibus-minimal): New variable. (ibus): Inherit from ibus-minimal.
2022-10-04gnu: icedove: Update to 102.3.1 [security fixes].Jonathan Brielmaier
Fixes CVE-2022-39236, CVE-2022-39249, CVE-2022-39250 and CVE-2022-39251. * gnu/packages/gnuzilla.scm (icedove): Update to 102.3.1.
2022-10-04gnu: eog-plugins: Fix source URL.Ludovic Courtès
The incorrect URL was introduced in d6d861c6151fb2cb9296b993425d9a64a7653d95. * gnu/packages/gnome.scm (eog-plugins)[source]: Change directory in URL.
2022-10-04gnu: Add awscli-2.Zzull
* gnu/packages/python-web.scm (awscli-2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-04gnu: Add python-executor.Zzull
* gnu/packages/python-xyz.scm (python-executor): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-04gnu: Add python-property-manager.Zzull
* gnu/packages/python-xyz.scm (python-property-manager): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-04services: anonip: Bail out when the input is not a FIFO.Ludovic Courtès
* gnu/services/web.scm (anonip-shepherd-service)[start]: Accept zero arguments. Define 'spawn'. Print a message and return #f when #$INPUT does not denote a FIFO.
2022-10-04gnu: guix: Update to 17134b9.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 17134b9.
2022-10-04home: Add home-batsignal-service-type.( via Guix-patches via
* gnu/home/services/pm.scm (home-batsignal-service-type): New variable. (home-batsignal-configuration): New record type. * doc/guix.texi: Document them. * gnu/local.mk: Add gnu/home/services/pm.scm.
2022-10-04gnu: augustus: Update to 3.2.0.Timotej Lazar
* gnu/packages/games.scm (augustus): Update to 3.2.0. [inputs]: Add expat. [snippet]: Unbundle it. Drop trailing #t. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04gnu: emacs-lsp-mode: Update to 26c4d3e.jgart
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04gnu: emacs-nov-el: Update to 0.4.0 and use gexps.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0. [arguments]: Use gexps. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04gnu: emacs-modus-themes: Update to 2.7.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1.
2022-10-04gnu: emacs-org-mime: Update to 0.3.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2.
2022-10-04gnu: Add emacs-circadian.kiasoc5
* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-03gnu: r-tximeta: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
2022-10-03gnu: r-bionero: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2. [propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
2022-10-03gnu: r-biodb: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
2022-10-03gnu: r-biocdockermanager: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
2022-10-03gnu: r-basilisk: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
2022-10-03gnu: r-bgeecall: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
2022-10-03gnu: r-pathview: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
2022-10-03gnu: r-delayedmatrixstats: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
2022-10-03gnu: r-scran: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
2022-10-03gnu: r-scuttle: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
2022-10-03gnu: r-hdf5array: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
2022-10-03gnu: r-biocpkgtools: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
2022-10-03gnu: r-biocviews: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
2022-10-03gnu: r-bioccheck: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
2022-10-03gnu: r-cytoml: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
2022-10-03gnu: r-opencyto: Update to 2.8.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
2022-10-03gnu: r-flowstats: Update to 4.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
2022-10-03gnu: r-flowviz: Update to 1.60.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
2022-10-03gnu: r-ggcyto: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03gnu: r-ncdfflow: Update to 2.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03gnu: r-rsubread: Update to 2.10.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03gnu: r-rgadem: Update to 2.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03gnu: r-enrichplot: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03gnu: r-dose: Update to 3.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03gnu: r-residualmatrix: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
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